Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8QPR	18560	2024-02-13	2023-10-03	3.8	4.06	3.79	4.0	0.006	0.89	0.0	0.05	17.70	0.01	2.246	8.76	0.16	12.6	87.4	0.0	-3.38	0.74	0.84	3.62	4.0	0.004	0.73	0.0	0.05	14.59	0.00	2.264	8.23	3.95	9.6	90.4	0.0	-2.55	0.48	0.75	0.84	2.91	5787	723	9	0	15	0	0	logfile
✔	8UEE	42161	2024-02-19	2023-10-01	3.2	3.40	3.22	3.5	0.005	0.63	0.0	0.05	14.50	0.00	1.893	6.69	0.43	2.7	97.3	0.0	0.29	0.64	0.81	2.25	3.5	0.005	0.63	0.0	0.05	15.90	0.00	1.836	6.13	1.55	3.4	96.6	0.0	0.30	1.15	0.64	0.82	1.90	25924	3285	19	0	21	1	0	logfile
✔	8QoT	18541	2024-02-13	2023-09-29	3.2	2.66	3.11	2.2	0.004	0.62	0.0	0.04	12.78	0.00	2.219	6.66	0.00	3.7	96.3	0.0	0.08	0.79	0.77	3.11	3.0	0.003	0.65	0.0	0.04	15.09	0.00	2.217	8.88	2.30	3.8	96.2	0.0	0.91	1.15	0.79	0.81	2.98	7493	968	5	0	0	0	0	logfile
✔	8QoE	18535	2024-02-17	2023-09-28	3.16	3.80	3.17	3.5	0.019	2.44	121.0	0.22	14.31	0.01	1.749	4.38	0.84	3.4	96.6	0.0	-2.30	0.75	0.78	2.78	3.6	0.002	0.53	0.0	0.04	15.34	0.00	2.100	3.76	0.52	3.0	97.0	0.0	1.45	0.70	0.73	0.80	1.87	17816	1136	2	0	0	0	9072	logfile
✔	8UD9	42148	2024-02-25	2023-09-28	2.04	2.16	2.10	2.1	0.005	0.58	0.0	0.10	17.07	0.00	2.235	2.23	0.15	1.7	98.3	0.0	1.27	0.81	0.90	6.09	2.1	0.003	0.58	0.0	0.04	17.57	0.00	2.164	4.30	1.90	1.5	98.5	0.0	1.57	0.38	0.82	0.90	5.98	49955	6264	58	0	2	1120	0	logfile
✔	8UDG	42149	2024-02-17	2023-09-28	4.98	6.27	5.10	5.0	0.004	0.65	0.0	0.04	11.43	0.00	2.089	3.07	0.00	2.8	97.1	0.2	-0.18	0.86	0.74	—	5.0	0.003	0.54	0.0	0.04	11.75	0.00	1.953	12.44	0.00	4.9	94.9	0.2	0.67	1.04	0.87	0.76	—	19524	1317	7	0	0	0	9627	logfile
✔	8UCS	42139	2024-02-15	2023-09-27	2.4	2.51	2.38	2.5	0.003	0.49	0.0	0.04	18.16	0.00	2.235	8.78	0.36	3.0	97.0	0.0	0.55	0.66	0.81	2.59	2.5	0.004	0.60	0.0	0.04	18.47	0.00	2.126	9.80	3.78	4.1	95.9	0.0	1.92	0.30	0.69	0.86	2.10	12605	1632	12	0	0	2	0	logfile
✔	8UCV	42141	2024-02-17	2023-09-27	3.81	4.82	3.48	2.6	0.008	0.60	0.0	0.04	20.56	0.00	1.901	4.71	0.00	3.2	96.8	0.0	1.47	0.84	0.74	0.31	2.6	0.002	0.56	0.0	0.04	20.31	0.00	1.197	7.96	1.27	2.4	97.6	0.0	1.57	2.32	0.86	0.80	0.67	19076	1054	7	64	5	0	9226	logfile
✔	8UCU	42140	2024-02-16	2023-09-27	2.85	3.74	2.84	3.1	0.009	0.49	0.0	0.04	18.73	0.00	1.905	2.84	0.00	3.1	96.9	0.0	1.77	0.88	0.84	3.01	3.2	0.003	0.49	0.0	0.04	18.32	0.00	1.886	3.11	0.64	2.4	97.6	0.0	2.19	3.19	0.87	0.84	2.73	14758	868	4	24	2	0	7290	logfile
✔	8UCW	42142	2024-02-16	2023-09-27	3.64	4.65	3.41	2.7	0.008	0.57	0.0	0.04	20.73	0.00	2.087	3.44	0.00	3.0	97.0	0.0	1.69	0.87	0.75	0.97	2.5	0.002	0.53	0.0	0.04	20.24	0.00	1.321	6.44	1.03	3.0	97.0	0.0	1.87	1.27	0.89	0.80	0.85	15967	868	5	61	4	0	7703	logfile
✔	8UCD	42124	2024-02-13	2023-09-26	3.0	3.31	2.98	3.3	0.007	0.86	0.0	0.04	17.94	0.00	2.171	4.36	0.12	4.4	95.6	0.0	0.96	0.64	0.82	2.47	3.3	0.002	0.56	0.0	0.04	17.13	0.00	2.253	3.87	1.33	4.6	95.4	0.0	1.29	0.91	0.59	0.81	2.32	8058	939	8	0	9	1	0	logfile
✔	8QN7	18509	2024-02-13	2023-09-25	2.7	2.38	2.18	2.7	0.010	1.43	0.0	0.09	13.54	0.01	2.570	5.31	3.45	8.3	91.7	0.0	-3.22	0.45	0.93	6.45	2.7	0.003	0.50	0.0	0.05	18.63	0.00	2.616	2.48	0.00	6.7	93.3	0.0	-3.34	1.19	0.43	0.92	6.04	1455	190	5	0	0	0	0	logfile
✔	8UC1	42112	2024-02-14	2023-09-25	3.4	3.74	3.42	3.8	0.005	0.72	0.0	0.05	14.10	0.01	2.220	15.14	0.71	4.2	95.8	0.0	1.30	0.66	0.76	2.67	3.8	0.003	0.54	0.0	0.04	14.92	0.00	2.229	9.93	2.47	3.5	96.3	0.2	1.98	1.14	0.58	0.78	1.96	10310	1336	4	0	2	0	0	logfile
✘	8QN6	18508	2024-02-21	2023-09-25	2.4	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	32010	4180	110	0	0	0	0	logfile
✔	8QMo	18498	2024-02-20	2023-09-24	2.76	2.46	2.65	2.7	0.004	0.63	1.0	0.04	18.26	0.00	2.007	5.59	2.08	3.9	96.0	0.1	0.67	0.76	0.85	3.52	2.7	0.002	0.52	0.0	0.04	18.07	0.00	2.033	5.55	1.30	3.9	96.1	0.0	0.34	0.38	0.77	0.85	3.50	26936	1721	7	0	7	0	12884	logfile
✔	8WG5	37503	2024-02-16	2023-09-20	3.05	3.73	3.03	3.0	0.003	0.59	0.0	0.04	26.06	0.00	2.099	12.21	0.32	2.6	97.4	0.0	1.36	0.83	0.71	0.29	3.0	0.004	0.66	0.0	0.04	26.82	0.00	2.082	13.16	2.42	2.8	97.2	0.0	1.67	1.57	0.91	0.87	1.41	14965	1135	12	294	0	0	0	logfile
✔	8UAE	42061	2024-02-15	2023-09-20	3.25	2.38	3.36	2.1	0.004	0.54	0.0	0.13	15.78	0.00	1.383	2.81	0.01	4.4	95.6	0.0	-0.64	0.80	0.81	2.82	2.1	0.002	0.52	0.0	0.04	17.07	0.00	2.033	4.08	1.39	4.3	95.7	0.0	-0.33	1.21	0.79	0.80	2.49	64624	8033	35	0	22	0	0	logfile
✔	8UAF	42062	2024-02-15	2023-09-20	3.18	2.39	3.33	2.1	0.005	0.64	0.0	0.27	18.11	0.00	1.721	4.71	0.00	5.0	95.0	0.0	-0.70	0.75	0.74	2.16	2.1	0.003	0.67	3.0	0.04	16.88	0.00	1.711	6.85	1.96	5.6	94.4	0.0	-1.07	0.43	0.75	0.74	1.78	64015	8033	35	0	22	0	0	logfile
✔	8QLo	18486	2024-02-13	2023-09-20	2.57	3.41	2.60	3.2	0.009	1.18	1.0	0.08	15.29	0.01	2.209	14.78	2.16	4.5	95.4	0.1	-1.41	0.76	0.78	2.76	3.2	0.005	0.69	0.0	0.04	16.79	0.00	2.110	12.10	2.80	3.4	96.6	0.0	0.34	0.88	0.77	0.81	2.88	7282	892	2	0	0	0	0	logfile
✔	8U8o	42026	2024-02-21	2023-09-18	2.4	2.72	2.39	2.3	0.006	0.78	0.0	0.05	18.03	0.00	2.256	3.62	1.24	3.4	96.6	0.0	0.12	0.82	0.79	4.19	2.3	0.004	0.68	0.0	0.04	16.74	0.00	2.121	5.95	1.12	3.1	96.9	0.0	1.07	1.40	0.88	0.91	3.41	30080	3856	16	0	32	0	0	logfile

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