Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	8FRZ	29411	2024-02-16	2023-01-09	2.75	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16480	1955	10	0	20	0	0	logfile
✔	8C5i	16437	2024-02-20	2023-01-09	3.15	3.22	—	3.2	0.004	0.56	0.0	0.04	16.20	0.00	1.942	3.57	0.12	5.1	94.7	0.2	-0.98	0.64	0.85	4.24	3.2	0.004	0.55	0.0	0.04	16.62	0.00	1.947	4.38	1.07	4.9	94.7	0.4	-0.82	0.26	0.64	0.85	3.95	89156	5706	18	0	0	0	43742	logfile
✘	8FSB	29418	2024-02-16	2023-01-09	2.75	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16640	1975	10	0	20	0	0	logfile
✘	8HZN	35089	2024-02-14	2023-01-09	3.25	2.62	3.24	3.1	0.002	0.49	0.0	0.04	8.51	0.00	2.182	6.40	3.12	5.2	94.7	0.1	-3.99	0.78	0.77	2.37	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10200	1330	4	0	2	0	0	logfile
✔	8FS7	29416	2024-02-18	2023-01-09	2.85	3.12	2.96	3.1	0.003	0.56	0.0	0.04	19.01	0.00	2.068	6.91	2.37	3.4	96.6	0.0	0.67	0.68	0.84	2.77	3.1	0.002	0.53	0.0	0.04	19.20	0.00	1.967	8.14	3.80	3.5	96.5	0.0	1.05	0.34	0.71	0.87	2.89	22195	2616	16	58	9	0	0	logfile
✔	8FS8	29417	2024-02-18	2023-01-09	3.04	3.37	3.15	3.3	0.002	0.53	0.0	0.04	14.33	0.00	2.003	9.25	3.29	3.1	96.9	0.0	0.66	0.66	0.75	2.11	3.3	0.004	0.58	0.0	0.04	17.17	0.00	1.885	11.91	3.29	4.8	95.2	0.0	0.08	1.01	0.70	0.79	1.88	21906	2582	16	55	9	0	0	logfile
✔	8FRW	29409	2024-02-16	2023-01-09	2.92	3.40	2.85	3.2	0.013	1.02	0.0	0.23	16.37	0.01	2.312	2.81	0.11	1.5	98.5	0.0	0.72	0.80	0.84	2.23	3.2	0.003	1.00	0.0	0.09	17.69	0.00	2.155	3.83	1.14	1.9	98.1	0.0	1.37	0.60	0.79	0.86	2.80	16680	1975	15	0	20	5	0	logfile
✔	8FRX	29410	2024-02-16	2023-01-09	2.7	3.26	2.58	3.0	0.014	1.37	0.0	0.05	13.29	0.00	2.253	3.29	0.00	3.1	96.9	0.0	0.20	0.80	0.85	3.56	3.0	0.004	1.26	0.0	0.05	14.69	0.00	2.239	5.08	1.84	3.3	96.7	0.0	0.52	0.37	0.81	0.87	3.45	16670	1975	10	0	20	0	0	logfile
✔	8HZS	35090	2024-02-13	2023-01-09	3.3	3.29	2.27	3.5	0.003	0.55	0.0	0.05	11.89	0.00	2.235	15.06	0.00	7.1	92.9	0.0	-5.68	0.40	0.80	4.81	3.5	0.005	0.71	0.0	0.05	13.23	0.00	2.155	8.25	7.50	11.3	88.7	0.0	-4.22	1.12	0.40	0.81	4.10	2376	348	6	0	0	0	0	logfile
✔	8FS6	29415	2024-02-18	2023-01-09	2.9	3.17	3.02	3.2	0.004	0.68	0.0	0.05	18.46	0.00	2.045	8.16	2.53	3.6	96.4	0.0	-0.78	0.62	0.81	2.33	3.2	0.003	0.57	0.0	0.04	18.70	0.00	1.894	9.32	4.38	3.4	96.6	0.0	0.01	1.24	0.65	0.84	2.51	22246	2621	16	58	9	0	0	logfile
✔	8HZX	35091	2024-02-19	2023-01-09	2.68	2.91	2.72	2.8	0.006	0.77	0.0	0.06	15.72	0.00	2.107	8.72	0.00	6.4	93.4	0.2	-1.13	0.80	0.86	3.94	2.8	0.003	0.58	0.0	0.05	16.27	0.00	2.124	6.98	2.10	6.8	92.8	0.4	-0.44	1.49	0.79	0.86	3.95	25320	3180	6	0	0	0	0	logfile
✔	8FS4	29413	2024-02-18	2023-01-09	2.94	3.30	3.09	3.3	0.004	0.65	0.0	0.05	18.51	0.00	1.835	9.66	2.69	3.6	96.4	0.0	-0.22	0.66	0.78	1.97	3.3	0.004	0.63	0.0	0.04	18.80	0.00	1.927	11.31	2.91	3.4	96.6	0.0	0.30	0.49	0.64	0.79	2.15	21291	2539	16	42	9	0	0	logfile
✘	8HZC	35088	2024-02-13	2023-01-08	3.2	3.16	2.79	3.3	0.002	0.51	0.0	0.05	13.53	0.00	2.497	11.14	0.00	11.3	88.7	0.0	-5.03	0.39	0.85	4.46	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3108	450	6	0	0	0	0	logfile
✔	8HZB	35087	2024-02-13	2023-01-08	3.2	3.13	2.70	3.3	0.008	0.92	0.0	0.06	16.62	0.00	2.162	16.73	0.00	10.3	89.7	0.0	-4.16	0.34	0.74	2.17	3.3	0.003	0.66	0.0	0.05	18.42	0.00	2.194	8.37	4.33	11.8	88.2	0.0	-2.75	0.44	0.33	0.74	2.17	2976	432	6	0	0	0	0	logfile
✔	8FRS	29406	2024-02-21	2023-01-08	3.96	3.29	3.03	3.2	0.002	0.54	0.0	0.04	14.45	0.00	2.208	5.19	0.00	7.1	92.6	0.3	-1.68	0.40	0.86	3.34	3.2	0.002	0.56	0.0	0.04	15.83	0.00	2.205	5.62	1.14	7.6	92.2	0.2	-1.61	0.29	0.41	0.87	2.85	31497	4120	14	0	0	0	0	logfile
✔	8FRP	29404	2024-02-13	2023-01-07	3.8	4.05	3.81	4.0	0.002	0.43	0.0	0.04	13.74	0.00	2.290	4.81	0.00	1.9	98.1	0.0	-1.11	0.64	0.74	1.40	4.0	0.003	0.73	0.0	0.04	17.10	0.00	2.199	13.98	3.54	2.4	97.6	0.0	1.28	1.01	0.64	0.83	1.09	7488	934	5	0	21	0	0	logfile
✔	8HYA	35085	2024-02-16	2023-01-06	3.4	3.97	3.56	3.9	0.004	0.71	0.0	0.04	13.95	0.01	2.242	13.12	0.00	5.9	94.1	0.0	0.88	0.62	0.77	1.40	3.9	0.003	0.64	0.0	0.04	16.28	0.00	2.220	12.04	3.25	5.9	94.1	0.0	1.21	0.44	0.58	0.74	1.02	14586	1856	4	0	6	0	0	logfile
✔	8C54	16433	2024-02-16	2023-01-06	2.52	2.38	2.49	2.5	0.004	0.56	0.0	0.04	18.81	0.00	2.233	6.25	3.43	2.2	97.8	0.0	0.62	0.72	0.84	4.48	2.5	0.002	0.43	0.0	0.04	17.14	0.00	2.146	6.35	1.87	1.9	98.1	0.0	0.88	0.16	0.71	0.84	5.15	14266	1928	12	0	4	330	0	logfile
✔	8FQL	29392	2024-02-22	2023-01-06	3.6	3.71	3.69	3.7	0.012	1.78	15.0	0.09	15.33	0.02	1.258	1.80	2.01	6.6	90.8	2.6	-2.43	0.54	0.69	1.76	3.7	0.004	0.76	0.0	0.04	17.84	0.00	2.150	10.67	4.02	7.2	92.0	0.7	-0.47	1.08	0.58	0.82	1.55	32652	4152	12	0	0	0	0	logfile
✔	8HYJ	35086	2024-02-20	2023-01-06	4.3	6.01	4.31	3.1	0.015	1.48	32.0	0.10	17.34	0.01	2.155	10.48	2.39	6.5	93.5	0.0	-2.61	0.80	0.54	—	3.1	0.003	0.71	0.0	0.04	16.38	0.00	2.023	19.19	0.00	6.1	93.8	0.1	-1.01	1.08	0.89	0.73	—	28568	3529	21	83	5	0	0	logfile

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