Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8ZWH	60527	2025-02-10	2024-06-13	2.5	3.26	—	3.0	0.011	0.91	0.0	0.06	9.45	0.00	2.284	18.21	0.00	3.8	96.2	0.0	-4.12	0.42	0.85	2.37	3.0	0.002	0.52	0.0	0.05	11.71	0.00	2.631	6.43	1.32	5.0	95.0	0.0	-3.24	1.17	0.43	0.85	3.74	2268	330	6	0	0	0	0	logfile
✔	8ZWJ	60529	2025-02-10	2024-06-13	3.1	2.80	2.17	3.2	0.006	0.74	0.0	0.05	15.84	0.00	2.218	14.51	0.00	10.1	89.9	0.0	-4.10	0.44	0.86	4.88	3.2	0.003	0.52	0.0	0.05	15.83	0.00	2.573	3.76	3.33	8.7	91.3	0.0	-2.16	1.27	0.42	0.86	4.43	2760	378	8	6	0	0	0	logfile
✔	8ZWi	60528	2025-02-10	2024-06-13	3.0	2.75	2.12	3.2	0.011	0.86	0.0	0.06	11.26	0.00	2.261	8.83	0.00	6.8	93.2	0.0	-3.70	0.44	0.86	5.14	3.2	0.006	0.63	0.0	0.05	15.16	0.00	2.588	5.57	1.55	3.7	96.3	0.0	-2.04	0.90	0.42	0.86	5.73	2526	366	6	0	0	0	0	logfile
✔	8ZWK	60530	2025-02-10	2024-06-13	3.4	2.76	2.79	3.4	0.003	0.60	0.0	0.05	16.32	0.00	2.253	13.62	0.00	8.2	91.8	0.0	-5.39	0.34	0.79	3.91	3.4	0.003	0.57	0.0	0.05	16.54	0.00	2.606	5.91	5.19	8.2	91.8	0.0	-3.46	1.50	0.36	0.82	4.46	2760	378	8	6	0	0	0	logfile
✔	8ZX6	60539	2025-02-11	2024-06-13	3.5	3.02	2.57	3.5	0.004	0.77	0.0	0.05	12.49	0.00	2.338	7.64	0.00	2.5	97.5	0.0	-4.38	0.32	0.81	5.08	3.5	0.007	0.78	0.0	0.05	14.16	0.00	2.638	7.22	1.52	11.9	88.1	0.0	-3.55	0.71	0.35	0.84	5.02	3468	456	6	0	0	0	0	logfile
✔	9FoR	50628	2025-02-11	2024-06-12	2.75	2.54	2.63	2.8	0.012	2.11	5.0	0.10	12.86	0.01	2.496	1.38	3.17	7.4	91.5	1.1	-5.01	0.49	0.92	7.55	2.7	0.004	0.90	0.0	0.04	16.08	0.01	2.626	0.92	1.59	7.2	92.8	0.0	-5.35	0.40	0.53	0.91	6.30	3405	490	10	0	0	0	0	logfile
✔	9FoF	50621	2025-02-11	2024-06-11	2.9	2.55	2.80	3.2	0.011	1.53	6.0	0.08	13.93	0.01	2.332	9.79	1.56	4.2	94.8	1.0	-4.04	0.27	0.57	3.42	2.8	0.006	0.98	0.0	0.05	17.69	0.00	2.593	1.76	1.56	7.8	92.2	0.0	-4.69	1.98	0.51	0.89	5.50	4176	600	12	0	0	0	0	logfile
✔	9C7U	45294	2025-02-12	2024-06-11	3.65	4.10	3.63	4.0	0.003	0.61	0.0	0.04	16.99	0.00	2.138	11.43	0.29	9.2	90.8	0.0	-0.72	0.71	0.83	2.04	4.0	0.004	0.62	0.0	0.04	17.57	0.00	2.540	10.83	5.96	9.4	90.6	0.0	-0.65	0.31	0.69	0.83	2.00	6848	896	4	0	1	0	0	logfile
✔	9FNB	50587	2025-02-11	2024-06-10	2.64	2.64	2.37	2.6	0.008	1.34	0.0	0.16	15.19	0.01	2.042	3.52	0.79	6.8	93.2	0.0	-2.48	0.52	0.93	6.97	2.6	0.005	0.69	0.0	0.05	15.91	0.00	2.514	6.26	0.79	6.6	93.4	0.0	-2.37	0.87	0.50	0.92	6.33	4568	540	8	0	16	0	0	logfile
✔	9C6Q	45254	2025-02-14	2024-06-08	3.18	3.22	3.07	3.3	0.005	0.64	0.0	0.04	15.43	0.00	2.139	5.91	0.19	6.6	93.4	0.1	-0.07	0.59	0.70	0.92	3.3	0.002	0.53	0.0	0.04	17.11	0.00	2.519	2.82	1.14	6.6	93.4	0.0	0.40	0.66	0.66	0.80	2.09	9841	1190	2	12	0	0	0	logfile
✔	9C6J	45248	2025-02-12	2024-06-07	2.41	3.08	2.55	2.9	0.008	0.79	0.0	0.05	25.12	0.01	1.871	10.86	0.00	0.0	0.0	0.0	—	0.87	0.89	—	2.9	0.008	0.67	0.0	0.04	24.39	0.01	1.886	8.14	0.00	0.0	0.0	0.0	—	0.26	0.87	0.91	—	8345	0	2	387	21	0	0	logfile
✔	9C6K	45249	2025-02-10	2024-06-07	2.94	3.79	2.95	3.1	0.007	0.76	0.0	0.04	26.38	0.01	1.888	17.91	0.00	0.0	0.0	0.0	—	0.89	0.84	—	3.1	0.007	0.71	0.0	0.04	25.52	0.00	1.871	14.48	0.00	0.0	0.0	0.0	—	0.87	0.89	0.87	—	1745	0	2	80	9	0	0	logfile
✔	9C6i	45247	2025-02-12	2024-06-07	2.56	3.19	2.65	2.9	0.008	0.68	0.0	0.04	25.62	0.01	1.892	11.33	0.00	0.0	0.0	0.0	—	0.92	0.89	—	2.9	0.010	0.74	0.0	0.05	25.15	0.01	1.844	9.20	0.00	0.0	0.0	0.0	—	1.28	0.93	0.93	—	8471	0	2	393	21	0	0	logfile
✔	9FMV	50571	2025-02-14	2024-06-07	3.43	2.30	3.33	2.1	0.004	0.65	0.0	0.04	15.23	0.01	2.203	9.66	0.55	3.2	96.8	0.0	1.60	0.75	0.72	1.40	2.1	0.004	0.65	0.0	0.04	16.10	0.01	2.459	7.49	2.12	2.9	97.1	0.0	1.95	0.35	0.75	0.74	1.71	10272	1254	5	0	0	0	0	logfile
✔	9C58	45207	2025-02-12	2024-06-06	4.7	4.87	4.69	4.8	0.003	0.73	0.0	0.05	10.28	0.00	1.776	1.47	0.00	2.9	97.1	0.0	0.63	0.70	0.62	—	4.7	0.005	0.76	0.0	0.04	6.86	0.00	1.906	3.11	0.00	8.4	91.6	0.0	-1.17	1.56	0.76	0.73	—	7954	1590	6	0	2	0	0	logfile
✔	8ZSZ	60435	2025-02-11	2024-06-06	3.59	3.78	3.47	3.7	0.017	1.81	9.0	0.09	14.91	0.01	1.624	28.95	2.63	2.4	97.6	0.0	-0.01	0.59	0.75	1.47	3.7	0.004	0.68	0.0	0.04	16.58	0.00	2.029	14.79	4.65	2.6	97.4	0.0	1.54	0.77	0.59	0.75	1.20	4754	630	4	0	8	0	0	logfile
✔	8ZRT	60404	2025-02-10	2024-06-05	3.62	3.79	3.44	3.8	0.003	0.69	0.0	0.04	16.25	0.01	2.227	13.78	0.81	3.1	96.9	0.0	0.00	0.47	0.72	1.94	3.8	0.003	0.70	0.0	0.04	16.77	0.01	2.588	12.27	6.85	3.8	96.2	0.0	1.18	0.34	0.47	0.72	1.82	2322	303	2	0	0	0	0	logfile
✔	8ZSP	60423	2025-02-12	2024-06-05	3.14	2.39	3.22	3.2	0.008	0.72	0.0	0.05	14.31	0.00	2.247	9.97	0.12	3.2	96.8	0.0	0.24	0.75	0.75	2.72	2.2	0.003	0.61	0.0	0.04	16.23	0.00	2.542	8.15	1.16	2.4	97.6	0.0	0.68	0.92	0.75	0.79	2.29	8076	1033	6	0	1	0	0	logfile
✔	8ZSB	60410	2025-02-11	2024-06-05	3.26	3.46	3.10	3.5	0.012	1.18	6.0	0.07	14.72	0.01	1.897	11.27	2.28	3.0	97.0	0.0	1.10	0.58	0.78	2.25	3.5	0.004	0.55	0.0	0.04	16.07	0.00	2.031	8.37	2.09	3.8	96.2	0.0	2.40	0.50	0.60	0.82	2.31	4798	614	4	0	2	0	0	logfile
✔	8ZSJ	60417	2025-02-12	2024-06-05	2.8	3.25	2.87	3.1	0.005	0.68	0.0	0.05	12.91	0.01	2.216	8.42	0.12	3.4	96.6	0.0	0.88	0.70	0.84	3.96	3.2	0.003	0.56	0.0	0.04	15.62	0.00	2.486	6.86	1.73	2.7	97.3	0.0	1.12	0.99	0.62	0.84	3.31	8118	1035	6	0	1	4	0	logfile

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