Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8ZRR	60403	2025-02-11	2024-06-05	3.61	2.82	3.14	2.7	0.008	0.99	0.0	0.05	16.46	0.01	1.345	8.98	3.81	3.5	95.7	0.8	0.51	0.58	0.70	1.24	2.7	0.003	0.79	0.0	0.05	16.62	0.00	2.384	7.23	4.04	2.8	97.2	0.0	1.64	0.77	0.59	0.73	1.62	4065	516	4	0	0	0	0	logfile
✔	9C4N	45191	2025-02-10	2024-06-04	2.9	2.74	—	3.0	0.013	1.70	0.0	0.06	9.18	0.01	2.779	0.00	0.00	14.3	85.7	0.0	-0.15	0.12	0.70	7.51	3.0	0.060	1.79	1.0	0.22	23.53	0.02	2.477	0.00	25.00	0.0	100.0	0.0	-6.32	1.38	0.19	0.79	5.31	69	9	1	0	0	0	0	logfile
✔	8ZRH	60396	2025-02-12	2024-06-04	3.6	2.84	3.64	2.1	0.007	0.93	0.0	0.05	16.05	0.01	2.383	9.08	1.82	3.8	95.9	0.3	0.45	0.61	0.67	0.80	2.2	0.003	0.82	0.0	0.05	17.01	0.01	2.429	11.41	5.00	5.2	94.7	0.1	-0.08	1.34	0.63	0.72	1.20	8036	1019	8	0	0	0	0	logfile
✘	9C4o	45192	2025-02-14	2024-06-04	1.99	2.17	2.04	2.2	0.004	0.65	0.0	0.04	16.53	0.00	2.208	5.77	0.18	1.7	98.3	0.0	-0.01	0.61	0.81	6.59	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10166	661	2	0	2	111	4883	logfile
✔	8ZQQ	60388	2025-02-11	2024-06-03	2.5	2.79	2.52	2.8	0.003	0.65	0.0	0.04	16.30	0.00	2.211	2.21	0.25	2.5	97.5	0.0	1.76	0.64	0.87	3.26	2.8	0.003	0.57	0.0	0.04	14.65	0.00	2.205	2.33	1.51	2.1	97.9	0.0	2.17	0.87	0.63	0.86	2.94	3836	492	3	0	6	0	0	logfile
✔	9C48	45177	2025-02-13	2024-06-03	2.4	2.10	2.43	1.8	0.006	0.90	0.0	0.06	16.10	0.00	2.232	5.54	0.00	2.7	97.3	0.0	-0.49	0.77	0.84	4.87	1.8	0.004	0.59	0.0	0.05	14.82	0.00	2.070	2.58	0.83	2.8	97.2	0.0	0.10	0.36	0.79	0.87	5.40	8481	993	18	0	36	249	0	logfile
✔	9C4B	45180	2025-02-11	2024-06-03	3.4	3.78	3.57	3.7	0.004	0.73	1.0	0.05	16.50	0.00	1.827	10.64	0.89	5.9	93.3	0.8	-0.46	0.62	0.72	1.52	3.7	0.003	0.56	0.0	0.04	17.01	0.00	2.386	7.04	1.78	6.7	93.0	0.3	-0.41	0.52	0.62	0.72	1.61	6110	393	1	0	0	0	3030	logfile
✔	9C45	45175	2025-02-11	2024-06-03	3.2	3.43	3.23	3.5	0.011	1.26	0.0	0.08	11.88	0.01	2.507	0.81	0.00	2.5	97.5	0.0	1.45	0.70	0.85	5.90	3.4	0.005	0.62	0.0	0.05	12.15	0.00	2.574	2.28	2.53	2.5	97.5	0.0	0.54	0.95	0.69	0.90	5.63	3900	496	6	0	9	0	0	logfile
✔	8ZQR	60389	2025-02-11	2024-06-03	3.6	3.82	3.65	3.9	0.005	0.92	2.0	0.06	18.43	0.01	2.229	8.96	0.76	5.8	94.2	0.0	-0.86	0.60	0.80	1.77	3.9	0.003	0.68	0.0	0.04	17.07	0.00	2.578	5.67	3.56	4.0	96.0	0.0	0.80	1.01	0.54	0.80	0.74	3778	486	2	0	3	0	0	logfile
✘	8ZQo	60386	2025-02-11	2024-06-03	2.8	2.96	2.77	3.0	0.004	0.76	0.0	0.05	17.77	0.01	2.155	4.33	1.20	1.8	98.2	0.0	1.88	0.66	0.88	2.87	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4032	515	3	0	7	1	0	logfile
✔	8ZQE	60384	2025-02-13	2024-06-02	2.9	2.31	3.03	2.1	0.004	0.71	0.0	0.05	13.70	0.00	2.169	12.51	0.21	4.5	95.5	0.0	-0.15	0.74	0.75	2.45	2.1	0.004	0.69	0.0	0.04	17.21	0.01	2.405	10.44	2.22	3.4	96.6	0.0	0.05	1.33	0.77	0.81	2.51	8767	1131	6	0	0	0	0	logfile
✔	8ZQ9	60379	2025-02-11	2024-06-01	2.87	3.10	2.91	3.0	0.007	1.13	0.0	0.11	23.71	0.01	2.272	12.58	2.11	6.5	93.5	0.0	-1.99	0.61	0.64	1.54	3.0	0.003	0.66	0.0	0.04	23.01	0.00	2.495	12.58	4.49	5.5	94.5	0.0	-0.16	1.01	0.70	0.78	2.23	6211	433	3	125	1	0	0	logfile
✔	8ZPS	60353	2025-02-13	2024-05-31	2.97	2.45	2.77	3.0	0.002	0.54	0.0	0.04	9.77	0.00	1.744	8.01	1.06	2.4	97.6	0.0	1.49	0.49	0.65	1.55	2.9	0.003	0.61	0.0	0.04	14.95	0.00	2.357	7.44	2.77	3.2	96.8	0.0	1.12	1.40	0.62	0.78	2.41	8848	1135	7	0	1	0	0	logfile
✔	9C3E	45166	2025-02-14	2024-05-31	3.5	4.21	3.49	3.9	0.005	0.89	0.0	0.05	15.76	0.01	2.140	16.01	1.92	4.2	95.7	0.2	-0.18	0.74	0.79	2.36	3.9	0.003	0.71	0.0	0.05	16.01	0.00	2.484	9.89	5.12	4.3	95.6	0.1	0.44	0.53	0.74	0.80	2.10	10619	1356	15	0	13	0	0	logfile
✔	8ZPW	60365	2025-02-13	2024-05-31	3.0	3.15	2.95	3.2	0.003	0.53	0.0	0.04	15.06	0.00	2.043	6.26	1.19	2.0	98.0	0.0	1.19	0.78	0.87	3.54	3.2	0.003	0.55	0.0	0.04	15.91	0.00	2.592	7.14	1.39	1.7	98.3	0.0	1.27	0.41	0.78	0.87	3.08	9252	1145	4	0	4	0	0	logfile
✔	9C3F	45167	2025-02-11	2024-05-31	3.78	4.13	3.80	4.2	0.009	1.27	2.0	0.06	21.43	0.03	2.277	7.47	4.47	3.1	96.9	0.0	1.59	0.53	0.74	0.56	4.2	0.002	0.59	0.0	0.04	18.84	0.00	2.598	6.18	3.68	2.7	97.3	0.0	2.02	0.35	0.52	0.73	0.79	3800	485	2	0	2	0	0	logfile
✔	9C3B	45164	2025-02-11	2024-05-31	3.4	3.72	3.46	3.6	0.007	0.88	0.0	0.05	16.52	0.02	2.213	9.76	3.24	8.2	90.2	1.5	-0.94	0.32	0.77	0.80	3.6	0.004	0.66	0.0	0.04	16.65	0.01	2.498	6.35	4.63	5.7	93.7	0.7	-0.56	1.00	0.33	0.89	3.06	4329	588	2	0	0	0	0	logfile
✔	8ZPT	60354	2025-02-13	2024-05-31	2.96	2.53	2.83	3.0	0.002	0.45	0.0	0.04	10.05	0.00	1.974	6.41	0.20	2.2	97.8	0.0	1.57	0.57	0.73	2.45	3.0	0.003	0.64	0.0	0.04	15.49	0.00	2.432	5.81	2.62	2.9	97.1	0.0	0.65	1.78	0.59	0.79	2.50	9151	1162	7	0	1	0	0	logfile
✔	9C2B	45153	2025-02-12	2024-05-30	2.42	2.65	2.43	2.7	0.007	0.98	0.0	0.06	18.26	0.01	2.161	3.71	0.00	2.1	97.9	0.0	0.27	0.67	0.85	4.42	2.7	0.003	0.59	0.0	0.05	16.95	0.00	1.907	3.14	1.81	1.2	98.8	0.0	1.30	0.32	0.69	0.87	3.91	8208	990	15	0	24	141	0	logfile
✔	9C2A	45152	2025-02-12	2024-05-30	2.74	2.08	2.74	1.9	0.008	0.94	0.0	0.06	12.74	0.01	2.025	6.15	0.00	2.6	97.4	0.0	-1.18	0.75	0.77	4.66	1.9	0.004	0.53	0.0	0.04	14.45	0.00	2.513	3.88	3.16	2.2	97.8	0.0	0.59	0.42	0.78	0.81	4.46	7833	933	12	0	21	102	0	logfile

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