Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9C2B	45153	2025-02-12	2024-05-30	2.42	2.65	2.43	2.7	0.007	0.98	0.0	0.06	18.26	0.01	2.161	3.71	0.00	2.1	97.9	0.0	0.27	0.67	0.85	4.42	2.7	0.003	0.59	0.0	0.05	16.95	0.00	1.907	3.14	1.81	1.2	98.8	0.0	1.30	0.32	0.69	0.87	3.91	8208	990	15	0	24	141	0	logfile
✔	8ZPB	60331	2025-02-14	2024-05-29	2.6	2.83	2.61	2.9	0.005	0.56	0.0	0.04	15.80	0.00	1.921	6.01	1.08	1.7	98.3	0.0	0.89	0.61	0.80	4.62	2.9	0.004	0.52	0.0	0.04	15.59	0.00	2.025	3.85	1.61	1.8	98.2	0.0	1.47	1.34	0.60	0.80	4.76	10676	667	4	0	5	54	5257	logfile
✔	9C1U	45130	2025-02-10	2024-05-29	2.31	2.35	2.46	2.4	0.004	0.47	0.0	0.05	10.27	0.00	2.112	2.84	0.00	0.3	99.7	0.0	0.19	0.71	0.87	6.57	2.4	0.004	0.62	0.0	0.05	14.87	0.00	2.586	8.97	4.17	0.0	100.0	0.0	0.25	0.44	0.68	0.89	6.12	2376	312	12	0	0	0	0	logfile
✔	9FHB	50444	2025-02-11	2024-05-27	3.87	4.06	3.87	4.0	0.005	0.96	0.0	0.05	15.86	0.01	2.140	16.76	3.25	4.1	95.1	0.8	-0.41	0.70	0.77	1.38	4.0	0.003	0.70	0.0	0.04	16.65	0.00	2.079	8.61	3.53	4.1	95.8	0.1	1.02	1.18	0.71	0.79	0.90	6751	862	8	0	7	0	0	logfile
✔	8ZNi	60272	2025-02-11	2024-05-27	3.29	4.18	3.32	3.9	0.004	0.71	0.0	0.21	14.83	0.00	1.220	19.67	0.00	10.4	89.6	0.0	-3.51	0.76	0.59	-0.17	3.9	0.003	0.78	0.0	0.05	15.41	0.00	2.529	11.83	6.34	12.9	87.1	0.0	-3.96	3.19	0.79	0.67	0.73	3585	496	3	0	6	0	0	logfile
✔	8ZND	60268	2025-02-11	2024-05-26	2.53	2.67	1.34	2.6	0.007	0.93	0.0	0.05	15.60	0.01	2.392	3.48	0.88	1.7	98.3	0.0	0.95	0.58	0.90	4.78	2.6	0.002	0.50	0.0	0.04	16.84	0.00	2.439	3.79	0.88	1.7	98.3	0.0	1.50	0.83	0.53	0.92	4.22	3334	416	2	0	1	24	0	logfile
✔	8ZNB	60266	2025-02-11	2024-05-26	2.53	2.68	2.16	2.7	0.007	0.95	0.0	0.05	15.55	0.00	2.421	7.24	2.06	1.2	98.8	0.0	0.61	0.55	0.89	4.44	2.7	0.002	0.58	0.0	0.04	17.27	0.00	2.443	6.19	1.18	1.0	99.0	0.0	1.03	0.90	0.51	0.91	3.98	3342	416	2	0	1	21	0	logfile
✔	8ZNE	60269	2025-02-10	2024-05-26	2.64	2.76	2.44	2.7	0.005	0.78	0.0	0.05	16.82	0.01	2.472	6.22	2.65	3.1	96.9	0.0	0.47	0.53	0.87	4.39	2.7	0.002	0.53	0.0	0.04	17.95	0.00	2.487	5.16	1.76	3.4	96.6	0.0	1.20	1.31	0.49	0.90	4.26	3312	417	2	0	1	9	0	logfile
✔	8ZNC	60267	2025-02-11	2024-05-26	2.41	2.55	1.33	2.5	0.007	0.97	0.0	0.05	19.34	0.01	2.408	6.47	1.76	2.4	97.6	0.0	0.66	0.53	0.90	3.96	2.5	0.003	0.54	0.0	0.04	19.21	0.00	2.452	5.27	1.18	1.7	98.3	0.0	1.33	1.17	0.49	0.90	4.15	3356	416	2	0	3	24	0	logfile
✔	8ZNG	60270	2025-02-11	2024-05-26	2.5	2.65	1.33	2.6	0.007	0.92	0.0	0.05	19.32	0.01	2.439	3.91	3.24	2.9	97.1	0.0	1.28	0.60	0.89	4.31	2.6	0.003	0.54	0.0	0.04	17.94	0.00	2.490	4.82	2.35	2.2	97.8	0.0	1.13	0.82	0.55	0.92	4.27	3347	416	2	0	2	16	0	logfile
✔	9FGR	50418	2025-02-10	2024-05-25	4.0	4.21	3.96	4.1	0.003	0.58	0.0	0.04	12.55	0.00	2.176	8.75	0.00	6.4	93.6	0.0	-1.53	0.76	0.82	—	4.1	0.003	0.65	0.0	0.04	14.72	0.00	2.582	7.48	2.90	6.4	93.6	0.0	-1.27	1.00	0.77	0.82	—	3209	412	3	0	1	1	0	logfile
✔	9C0J	45086	2025-02-11	2024-05-25	3.17	2.92	3.11	3.2	0.005	1.02	0.0	0.05	22.01	0.01	2.099	0.65	0.80	1.2	98.8	0.0	-0.50	0.69	0.87	5.25	3.2	0.004	0.63	0.0	0.04	22.01	0.00	1.976	3.00	2.68	1.9	98.1	0.0	0.97	0.37	0.70	0.89	4.70	7010	425	5	164	3	0	0	logfile
✔	9FGS	50420	2025-02-10	2024-05-25	4.0	4.27	4.01	4.2	0.003	0.66	0.0	0.04	13.38	0.00	2.251	10.57	0.00	8.7	91.3	0.0	-1.99	0.78	0.80	—	4.2	0.003	0.66	0.0	0.04	15.42	0.00	2.413	9.77	3.51	8.7	91.1	0.2	-1.76	0.98	0.78	0.81	—	3187	412	3	0	1	0	0	logfile
✔	9FGU	50428	2025-02-10	2024-05-25	4.3	4.49	4.25	4.3	0.003	0.72	0.0	0.05	13.96	0.00	2.123	19.81	0.29	4.9	95.1	0.0	-1.32	0.75	0.70	—	4.3	0.003	0.74	0.0	0.05	13.56	0.00	2.535	13.52	0.00	6.1	93.9	0.0	-1.56	1.04	0.76	0.71	—	3241	413	3	0	1	0	0	logfile
✔	9C0F	45082	2025-02-13	2024-05-25	3.6	4.55	3.55	3.5	0.026	1.89	5.0	0.11	16.99	0.01	2.314	1.58	0.34	2.2	97.7	0.1	-0.53	0.82	0.70	1.47	3.6	0.005	0.73	0.0	0.04	18.75	0.00	2.487	10.60	1.34	5.5	94.4	0.1	-0.03	0.84	0.86	0.79	0.64	9507	970	6	70	4	0	0	logfile
✘	9C0i	45085	2025-02-12	2024-05-25	2.91	2.56	2.89	2.8	0.006	1.03	0.0	0.06	21.52	0.01	2.090	1.50	0.80	1.4	98.6	0.0	-0.39	0.67	0.89	5.23	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7676	425	5	197	2	0	0	logfile
✔	9FGT	50424	2025-02-10	2024-05-25	3.8	4.00	3.78	4.0	0.005	0.70	0.0	0.05	14.86	0.00	2.094	7.67	0.00	7.8	92.2	0.0	-1.56	0.72	0.81	2.12	3.9	0.004	0.67	0.0	0.05	15.43	0.00	2.459	6.10	1.93	6.9	93.1	0.0	-1.65	0.43	0.72	0.80	2.01	2921	373	3	0	1	0	0	logfile
✔	8ZMY	60262	2025-02-13	2024-05-24	2.9	2.88	2.74	3.0	0.010	0.91	0.0	0.05	15.08	0.00	2.203	20.23	0.00	4.2	95.8	0.0	-4.52	0.51	0.79	2.59	2.9	0.007	0.95	0.0	0.05	17.96	0.00	2.515	6.34	3.80	7.7	92.3	0.0	-2.93	2.47	0.59	0.91	3.97	8652	1176	19	0	27	0	0	logfile
✔	8ZMS	60255	2025-02-10	2024-05-23	3.7	3.97	3.83	4.0	0.007	1.15	0.0	0.05	9.68	0.01	2.349	3.51	0.00	5.0	95.0	0.0	-3.71	0.44	0.76	2.35	4.0	0.004	0.78	0.0	0.04	14.03	0.00	2.493	9.53	1.63	2.4	97.6	0.0	0.89	1.07	0.45	0.76	0.99	2920	386	2	0	1	0	0	logfile
✔	9BXR	45009	2025-02-12	2024-05-22	3.2	2.90	3.18	3.3	0.011	1.87	0.0	0.09	11.16	0.01	0.991	32.81	0.00	6.7	92.0	1.3	-2.61	0.36	0.73	3.45	3.1	0.003	0.65	0.0	0.05	15.11	0.00	2.402	2.51	1.99	6.4	93.6	0.0	-2.70	1.26	0.38	0.78	2.64	7184	462	6	0	0	0	3656	logfile

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