Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9BXQ	45008	2025-02-12	2024-05-22	3.1	3.01	2.97	3.2	0.011	1.84	0.0	0.09	10.87	0.01	1.454	27.94	0.00	6.7	93.3	0.0	-2.37	0.30	0.68	3.66	3.2	0.004	0.65	0.0	0.05	13.40	0.00	2.489	3.91	0.25	6.4	93.6	0.0	-2.97	1.24	0.35	0.78	4.99	7182	462	6	0	0	0	3654	logfile
✔	9BXo	45007	2025-02-12	2024-05-22	3.0	2.93	2.88	3.0	0.011	1.74	0.0	0.09	12.75	0.01	2.020	23.59	0.00	4.7	95.3	0.0	-1.64	0.43	0.82	5.05	2.9	0.004	0.61	0.0	0.05	15.81	0.00	2.323	3.63	1.49	1.8	98.2	0.0	-2.06	0.88	0.48	0.87	4.67	7182	462	6	0	0	0	3654	logfile
✔	9BXi	45005	2025-02-12	2024-05-22	2.7	2.84	2.60	2.9	0.010	1.61	0.0	0.08	10.28	0.01	1.231	13.85	0.00	6.7	93.3	0.0	-1.83	0.46	0.86	5.10	2.9	0.004	0.56	0.0	0.05	15.93	0.00	2.479	2.93	1.49	6.4	93.6	0.0	-2.06	1.67	0.46	0.89	4.13	7182	462	6	0	0	0	3654	logfile
✔	9BWT	44979	2025-02-14	2024-05-21	2.5	2.72	2.60	2.8	0.006	0.71	0.0	0.04	17.53	0.00	1.847	23.32	2.72	4.2	95.6	0.2	1.32	0.47	0.79	3.62	2.8	0.003	0.59	0.0	0.04	17.42	0.00	2.502	6.58	2.14	3.8	96.1	0.1	1.29	0.42	0.62	0.88	4.03	9955	1271	5	0	3	6	0	logfile
✔	8ZLP	60232	2025-02-11	2024-05-20	3.5	3.09	3.05	3.4	0.007	0.55	0.0	0.05	12.26	0.00	2.368	4.84	0.00	4.2	95.8	0.0	-4.52	0.48	0.91	4.59	3.4	0.007	0.63	0.0	0.05	14.80	0.00	2.604	4.96	3.43	6.2	93.8	0.0	-3.12	1.91	0.46	0.91	4.12	4116	588	6	0	6	0	0	logfile
✔	9BVo	44939	2025-02-11	2024-05-20	4.4	4.59	4.27	4.5	0.003	0.64	0.0	0.08	16.83	0.01	2.321	2.66	5.68	2.7	97.3	0.0	-0.49	0.51	0.69	—	4.5	0.003	0.73	0.0	0.06	12.82	0.00	2.517	7.89	0.00	5.3	94.7	0.0	1.34	1.02	0.60	0.77	—	5469	642	5	0	8	0	0	logfile
✔	8ZLo	60231	2025-02-11	2024-05-20	3.1	2.98	2.81	3.3	0.015	1.52	0.0	0.08	17.15	0.01	2.063	28.08	0.00	9.4	90.6	0.0	-4.08	0.25	0.57	3.84	3.1	0.006	0.98	0.0	0.05	14.91	0.00	2.600	9.98	3.95	10.1	89.9	0.0	-4.03	1.95	0.52	0.88	3.30	4816	660	18	0	10	0	0	logfile
✔	9BVQ	44941	2025-02-11	2024-05-20	3.3	3.82	3.27	3.7	0.003	0.47	0.0	0.10	15.64	0.00	2.201	2.52	1.58	1.2	98.8	0.0	0.89	0.70	0.88	3.92	3.7	0.003	0.58	0.0	0.04	13.78	0.00	2.590	2.86	0.95	3.2	96.8	0.0	2.09	1.04	0.64	0.88	3.34	5977	700	6	0	9	0	0	logfile
✘	9FEE	50339	2025-02-13	2024-05-19	3.03	3.26	3.12	3.3	0.004	0.58	0.0	0.05	15.80	0.00	2.225	4.99	0.20	7.5	92.5	0.0	-1.40	0.76	0.87	2.79	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9112	1236	4	0	0	0	0	logfile
✔	8ZKZ	60213	2025-02-12	2024-05-17	2.7	3.71	2.76	3.4	0.008	0.82	0.0	0.05	11.98	0.01	2.107	3.41	0.22	2.3	97.7	0.0	1.23	0.73	0.89	3.23	3.4	0.003	0.56	0.0	0.04	13.60	0.00	2.536	3.99	0.22	2.1	97.9	0.0	2.11	0.90	0.72	0.88	2.14	8490	1080	4	0	3	0	0	logfile
✔	8ZL1	60215	2025-02-12	2024-05-17	2.86	3.89	2.90	3.5	0.004	0.65	0.0	0.04	12.59	0.00	2.214	8.00	0.22	2.5	97.5	0.0	1.27	0.71	0.87	2.81	3.5	0.002	0.57	0.0	0.04	14.08	0.00	2.481	6.96	1.10	2.2	97.8	0.0	1.57	0.32	0.72	0.87	2.63	8466	1078	4	0	2	0	0	logfile
✔	8ZL9	38897	2025-02-11	2024-05-17	4.36	4.49	4.31	4.4	0.005	1.01	1.0	0.06	14.25	0.01	2.243	9.31	0.14	7.6	92.0	0.4	-2.34	0.56	0.51	—	4.4	0.003	0.75	0.0	0.05	14.20	0.01	2.476	17.86	0.14	10.2	89.7	0.1	-2.10	1.26	0.58	0.55	—	6644	838	5	0	0	0	0	logfile
✔	8ZL9	60223	2025-02-11	2024-05-17	4.36	4.49	4.31	4.4	0.005	1.01	1.0	0.06	14.25	0.01	2.243	9.31	0.14	7.6	92.0	0.4	-2.34	0.56	0.51	—	4.4	0.003	0.75	0.0	0.05	14.20	0.01	2.476	17.86	0.14	10.2	89.7	0.1	-2.10	1.26	0.58	0.55	—	6644	838	5	0	0	0	0	logfile
✔	8ZL4	60218	2025-02-13	2024-05-17	3.65	4.23	3.94	4.1	0.006	0.82	0.0	0.05	13.18	0.01	2.252	8.44	0.00	1.8	98.2	0.0	0.78	0.64	0.87	2.37	4.1	0.003	0.77	0.0	0.04	15.42	0.01	2.449	9.30	2.83	1.4	98.6	0.0	1.28	0.95	0.63	0.86	1.40	8596	1082	4	0	6	0	0	logfile
✔	8ZL6	60220	2025-02-13	2024-05-17	2.8	3.89	2.87	3.6	0.006	0.74	0.0	0.05	11.80	0.00	2.204	5.47	0.33	1.7	98.3	0.0	2.02	0.68	0.86	2.89	3.6	0.002	0.53	0.0	0.04	13.65	0.00	2.512	5.07	0.33	1.9	98.1	0.0	2.31	0.32	0.68	0.87	1.97	8508	1078	4	0	4	0	0	logfile
✔	9BUR	44917	2025-02-11	2024-05-17	2.95	3.33	3.04	3.3	0.008	1.04	0.0	0.05	14.37	0.01	2.241	6.52	0.32	3.3	96.7	0.0	-4.84	0.60	0.84	3.90	3.3	0.003	0.59	0.0	0.04	16.37	0.00	2.409	5.23	0.81	2.5	97.5	0.0	0.26	0.51	0.63	0.86	3.44	5877	705	4	0	6	0	0	logfile
✔	9BUM	44912	2025-02-11	2024-05-17	3.63	3.97	3.60	3.9	0.005	0.97	0.0	0.06	14.42	0.01	2.278	5.93	0.43	4.3	95.7	0.0	-4.76	0.60	0.78	2.43	3.9	0.004	0.70	0.0	0.04	15.87	0.00	2.516	10.38	1.92	5.1	94.9	0.0	-0.51	1.02	0.60	0.78	2.14	4415	538	3	0	3	0	0	logfile
✘	8ZKW	60210	2025-02-12	2024-05-17	2.77	3.79	3.01	3.5	0.005	0.68	0.0	0.05	12.73	0.00	2.101	8.14	0.00	2.5	97.5	0.0	0.83	0.67	0.88	2.97	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8504	1080	4	0	4	0	0	logfile
✔	9FCJ	50317	2025-02-10	2024-05-15	2.7	2.89	2.64	2.9	0.003	0.55	0.0	0.04	16.44	0.00	2.213	4.76	0.56	1.6	98.4	0.0	0.06	0.59	0.86	3.47	2.9	0.003	0.58	0.0	0.04	17.11	0.00	2.568	5.08	2.23	1.9	98.1	0.0	1.51	0.42	0.52	0.84	2.99	3174	389	5	0	2	29	0	logfile
✔	9BT8	44881	2025-02-11	2024-05-14	3.34	3.52	3.31	3.5	0.005	0.64	0.0	0.04	16.43	0.00	2.269	6.88	0.32	3.0	97.0	0.0	-0.41	0.74	0.85	2.56	3.5	0.003	0.59	0.0	0.04	17.06	0.00	2.499	6.09	4.35	3.0	97.0	0.0	-0.38	0.32	0.73	0.84	2.10	5712	728	6	0	0	0	0	logfile

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