Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8YWG	39632	2025-02-12	2024-03-31	3.28	2.63	3.24	2.3	0.003	0.66	0.0	0.04	14.30	0.00	2.255	5.39	0.24	4.7	95.2	0.1	0.59	0.76	0.77	2.62	2.3	0.004	0.65	0.0	0.04	16.88	0.00	2.448	6.96	3.01	5.3	94.7	0.0	0.84	0.85	0.77	0.80	2.20	7707	963	1	0	0	0	0	logfile
✔	9B8J	44347	2025-02-12	2024-03-30	3.4	2.22	3.37	2.1	0.003	0.47	0.0	0.04	11.29	0.00	2.233	4.79	0.84	4.1	95.9	0.0	-0.62	0.71	0.76	3.47	2.1	0.003	0.56	0.0	0.04	14.61	0.00	2.495	5.39	2.75	3.8	96.2	0.0	-0.63	0.28	0.73	0.77	2.84	7610	961	10	0	7	0	0	logfile
✔	8YW3	39621	2025-02-13	2024-03-29	2.68	3.44	2.77	3.3	0.004	0.66	0.0	0.04	17.97	0.00	2.163	11.08	7.83	3.2	96.8	0.0	0.63	0.66	0.77	2.00	3.3	0.004	0.63	0.0	0.04	17.80	0.00	2.508	7.35	3.76	4.0	96.0	0.0	0.71	0.27	0.65	0.77	2.36	9231	1160	6	0	0	0	0	logfile
✔	8YW4	39622	2025-02-13	2024-03-29	3.26	3.55	3.31	3.5	0.004	0.56	0.0	0.04	18.35	0.00	2.190	7.94	0.33	5.2	94.6	0.2	-0.25	0.56	0.66	0.32	3.5	0.004	0.62	0.0	0.04	18.54	0.00	2.519	6.94	3.58	5.3	94.5	0.2	0.65	1.19	0.63	0.83	1.67	8619	1082	6	0	0	0	0	logfile
✔	8YVU	39614	2025-02-11	2024-03-29	3.9	4.30	3.86	4.2	0.003	0.71	0.0	0.04	13.76	0.00	2.277	12.74	0.00	4.1	95.5	0.4	1.38	0.50	0.63	0.56	4.2	0.003	0.71	0.0	0.04	16.38	0.00	2.599	9.64	2.83	4.3	95.5	0.2	1.55	0.51	0.53	0.66	-0.19	4216	530	10	0	2	0	0	logfile
✔	8YW5	39623	2025-02-13	2024-03-29	2.84	3.09	2.86	3.1	0.003	0.50	0.0	0.04	11.96	0.00	2.064	4.62	3.79	4.6	95.4	0.0	-0.41	0.61	0.80	3.98	3.1	0.003	0.57	0.0	0.04	14.94	0.00	2.520	4.16	3.25	4.4	95.6	0.0	1.36	0.32	0.61	0.81	3.38	8937	1157	6	0	0	0	0	logfile
✔	9EUY	19989	2025-02-12	2024-03-28	2.95	3.23	3.00	3.3	0.003	0.74	0.0	0.05	11.99	0.01	2.311	3.09	0.24	1.8	98.2	0.0	0.41	0.69	0.83	3.53	3.3	0.002	0.57	0.0	0.04	16.22	0.00	2.477	5.28	2.27	1.5	98.5	0.0	1.80	0.64	0.68	0.83	2.60	7846	984	4	0	2	0	0	logfile
✔	9EUQ	19980	2025-02-11	2024-03-28	2.98	3.52	3.13	3.4	0.003	0.58	0.0	0.04	18.09	0.00	2.026	14.76	0.56	4.2	95.8	0.0	0.62	0.63	0.83	2.08	3.4	0.004	0.67	0.0	0.04	18.48	0.00	1.941	12.85	4.47	4.2	95.7	0.1	0.56	0.76	0.64	0.84	2.08	6693	880	2	0	2	0	0	logfile
✔	9EVC	19998	2025-02-11	2024-03-28	3.73	3.99	3.80	3.9	0.004	0.80	0.0	0.05	16.47	0.01	2.095	16.28	0.43	6.7	93.3	0.0	-1.61	0.62	0.71	0.24	3.9	0.003	0.78	0.0	0.04	17.45	0.00	2.331	17.19	4.75	7.1	92.9	0.0	-0.45	0.68	0.62	0.74	0.50	6507	857	2	0	1	0	0	logfile
✔	9B7Y	44328	2025-02-12	2024-03-28	2.51	3.13	2.67	3.0	0.004	0.58	0.0	0.04	24.66	0.00	2.333	7.45	0.00	1.2	98.8	0.0	3.53	0.79	0.84	3.28	3.0	0.005	0.53	0.0	0.03	24.80	0.00	2.493	6.17	1.17	1.3	98.7	0.0	3.51	0.97	0.79	0.85	3.50	8361	770	6	120	0	0	0	logfile
✔	8YUU	39583	2025-02-13	2024-03-27	2.7	2.89	2.72	2.9	0.005	0.83	0.0	0.06	10.47	0.00	2.076	10.31	0.00	3.5	96.5	0.0	1.48	0.68	0.83	4.11	2.9	0.004	0.63	0.0	0.04	14.37	0.00	2.539	4.51	1.84	2.7	97.3	0.0	1.81	0.53	0.66	0.83	3.56	9037	1145	6	0	2	0	0	logfile
✔	9B73	44299	2025-02-12	2024-03-27	1.96	2.85	2.08	2.6	0.004	0.50	0.0	0.05	14.71	0.01	1.936	6.02	0.36	0.0	100.0	0.0	0.18	0.76	0.90	5.56	2.6	0.003	0.52	0.0	0.04	13.78	0.00	2.011	4.94	0.95	0.9	99.1	0.0	0.82	1.22	0.76	0.90	4.44	8016	978	9	0	15	66	0	logfile
✔	9B79	44304	2025-02-12	2024-03-27	2.71	2.95	2.77	3.0	0.003	0.60	0.0	0.05	12.08	0.00	2.229	6.42	0.00	2.4	97.6	0.0	0.94	0.58	0.72	2.58	3.0	0.005	0.72	0.0	0.05	15.57	0.00	2.441	7.68	3.54	2.4	97.6	0.0	1.08	1.76	0.63	0.79	2.22	7876	1044	4	0	0	0	0	logfile
✔	8YUT	39582	2025-02-12	2024-03-27	2.7	2.92	2.83	2.9	0.008	0.81	0.0	0.06	10.59	0.00	2.231	4.63	0.00	1.9	98.1	0.0	1.32	0.63	0.77	3.26	2.9	0.002	0.54	0.0	0.04	14.49	0.00	2.414	4.02	1.68	2.0	98.0	0.0	2.17	0.62	0.61	0.78	2.67	8229	1041	6	0	2	0	0	logfile
✔	9ETM	19944	2025-02-12	2024-03-26	3.35	3.68	3.42	3.7	0.003	0.64	0.0	0.04	17.42	0.01	2.377	2.14	0.00	2.8	97.2	0.0	-0.09	0.58	0.75	2.42	3.7	0.004	0.80	0.0	0.05	17.44	0.00	2.442	9.91	3.23	2.5	97.5	0.0	1.24	1.34	0.57	0.75	2.34	7404	928	15	0	5	0	0	logfile
✔	9ERo	19928	2025-02-11	2024-03-24	2.9	3.15	2.93	3.1	0.010	1.67	0.0	0.09	13.22	0.01	2.427	3.65	5.26	5.5	94.5	0.0	-4.12	0.48	0.85	4.87	3.1	0.003	0.74	0.0	0.05	14.75	0.00	2.599	5.09	2.26	0.5	99.5	0.0	-1.63	2.51	0.43	0.82	5.39	5775	750	10	0	0	0	0	logfile
✔	9ERM	19926	2025-02-10	2024-03-24	2.3	2.49	2.28	2.5	0.009	1.43	0.0	0.09	11.15	0.01	2.641	0.85	3.03	4.1	95.9	0.0	-2.04	0.45	0.94	7.10	2.5	0.003	0.67	0.0	0.05	16.50	0.00	2.637	3.25	2.42	2.5	97.5	0.0	-1.25	0.58	0.44	0.93	6.31	2870	375	5	0	0	0	0	logfile
✔	9ERN	19927	2025-02-11	2024-03-24	2.5	2.72	2.52	2.6	0.009	1.38	0.0	0.08	11.58	0.01	2.539	0.00	3.03	2.7	97.3	0.0	-2.81	0.43	0.92	6.38	2.7	0.003	0.59	0.0	0.05	15.91	0.00	2.598	2.28	0.76	1.1	98.9	0.0	-1.59	0.98	0.43	0.91	6.10	3444	450	6	0	0	0	0	logfile
✔	9B63	44244	2025-02-14	2024-03-23	2.76	2.46	2.75	2.8	0.002	0.47	0.0	0.03	17.29	0.00	2.238	5.01	2.22	3.5	96.5	0.0	3.41	0.55	0.78	2.99	2.8	0.003	0.48	0.0	0.04	17.18	0.00	2.574	5.63	3.05	3.3	96.7	0.0	3.88	0.29	0.53	0.79	2.99	10461	1348	8	0	0	0	0	logfile
✔	9B60	44233	2025-02-14	2024-03-23	2.57	2.37	2.54	2.6	0.002	0.45	0.0	0.03	16.62	0.00	2.245	4.52	1.66	3.0	97.0	0.0	3.66	0.54	0.78	3.02	2.6	0.004	0.53	0.0	0.04	16.77	0.00	2.516	4.62	2.86	3.3	96.7	0.0	3.48	0.86	0.55	0.81	3.11	10461	1348	8	0	0	0	0	logfile

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