Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9JKB	61550	2025-02-14	2024-09-15	3.93	4.21	3.97	4.1	0.003	0.67	0.0	0.04	15.64	0.01	2.253	7.81	0.19	4.6	95.4	0.0	-0.64	0.78	0.81	0.96	4.1	0.004	0.71	0.0	0.04	17.54	0.00	2.523	13.61	2.56	4.2	95.8	0.0	0.45	1.03	0.78	0.80	1.08	9532	1179	5	0	0	0	0	logfile
✔	9JJi	61528	2025-02-14	2024-09-13	3.4	2.52	3.39	2.2	0.005	0.60	0.0	0.05	12.41	0.00	2.221	4.62	0.00	2.6	97.4	0.0	-0.45	0.60	0.80	3.64	2.1	0.004	0.65	0.0	0.05	14.91	0.01	2.493	4.06	2.95	2.6	97.4	0.0	-0.62	2.00	0.61	0.82	3.27	10021	1332	4	0	0	0	0	logfile
✔	9GRC	51520	2025-02-14	2024-09-11	3.5	4.03	3.54	15.0	0.002	0.66	0.0	0.04	13.80	0.00	2.197	7.46	0.00	3.9	96.1	0.0	-1.19	0.41	0.06	0.59	9.1	0.003	0.79	0.0	0.04	16.17	0.00	2.406	14.76	1.34	6.5	93.5	0.0	-1.20	1.56	0.48	0.19	0.52	9717	1263	6	0	2	0	0	logfile
✔	9GQo	51510	2025-02-11	2024-09-09	3.46	4.74	3.51	3.6	0.003	0.71	0.0	0.04	18.40	0.01	2.090	14.91	0.41	6.2	93.8	0.0	-1.32	0.77	0.70	0.13	3.6	0.004	0.86	0.0	0.04	18.13	0.00	1.907	20.42	3.87	7.2	92.8	0.0	-0.95	1.41	0.82	0.82	0.04	6716	880	2	0	3	0	0	logfile
✔	9DK8	46946	2025-02-11	2024-09-08	3.3	3.83	3.43	3.8	0.003	0.56	0.0	0.04	14.36	0.00	2.207	9.10	0.00	6.4	93.6	0.0	-0.16	0.61	0.83	2.88	3.8	0.003	0.65	0.0	0.04	17.16	0.00	2.413	7.60	1.36	6.0	94.0	0.0	-0.02	0.43	0.61	0.83	2.14	6678	858	6	0	0	0	0	logfile
✔	9JF8	61430	2025-02-10	2024-09-04	3.05	3.21	3.01	3.2	0.005	1.05	2.0	0.07	13.51	0.01	1.759	3.98	0.00	8.7	91.3	0.0	-6.51	0.54	0.82	3.74	3.2	0.003	0.73	0.0	0.04	15.83	0.00	2.468	3.36	2.87	8.9	91.1	0.0	-0.36	0.96	0.50	0.82	3.47	3266	395	2	0	1	0	0	logfile
✔	9GNQ	51477	2025-02-13	2024-09-03	2.9	3.52	2.88	3.3	0.006	0.69	0.0	0.05	17.14	0.01	2.084	5.18	0.99	2.8	97.1	0.1	0.45	0.76	0.89	3.67	3.3	0.004	0.66	0.0	0.05	16.09	0.00	1.974	4.31	1.79	2.3	97.7	0.0	1.29	2.01	0.72	0.89	3.42	9309	1166	7	1	4	0	0	logfile
✔	9DHD	46867	2025-02-14	2024-09-03	2.9	3.41	3.00	3.2	0.006	0.69	0.0	0.05	16.29	0.00	2.433	8.70	1.88	2.9	97.1	0.0	-0.84	0.81	0.86	3.56	3.2	0.004	0.62	0.0	0.04	16.55	0.00	2.483	7.45	2.24	2.7	97.3	0.0	-0.33	0.30	0.83	0.87	3.12	10063	1259	3	0	0	0	0	logfile
✔	9JE0	61403	2025-02-10	2024-09-01	3.23	3.76	3.35	3.9	0.003	0.58	0.0	0.04	14.22	0.00	2.281	4.93	2.61	2.1	97.9	0.0	-0.32	0.44	0.66	1.06	3.8	0.003	0.69	0.0	0.04	15.93	0.00	2.614	8.66	2.61	2.6	97.4	0.0	2.09	0.61	0.43	0.70	1.21	3321	435	2	0	1	1	0	logfile
✔	9JDV	61399	2025-02-10	2024-09-01	3.32	3.91	3.55	3.9	0.006	0.71	0.0	0.03	13.99	0.00	2.150	9.73	2.03	2.8	97.2	0.0	-0.41	0.48	0.66	1.14	3.9	0.003	0.66	0.0	0.04	16.25	0.00	2.340	10.03	2.90	3.1	96.9	0.0	2.29	1.06	0.47	0.72	1.33	3311	435	2	0	1	1	0	logfile
✔	9JDB	61387	2025-02-11	2024-08-31	2.64	2.91	2.73	2.9	0.007	1.10	0.0	0.04	18.08	0.00	2.250	4.26	1.41	2.0	98.0	0.0	0.01	0.70	0.87	4.46	2.9	0.005	0.79	0.0	0.05	17.87	0.01	2.592	3.56	1.13	2.6	97.4	0.0	0.06	0.20	0.70	0.87	4.20	6592	808	4	0	2	0	0	logfile
✔	9JBo	61321	2025-02-10	2024-08-27	3.39	3.02	2.41	3.3	0.005	0.76	0.0	0.05	18.29	0.00	2.444	13.61	0.00	6.1	93.9	0.0	-3.03	0.38	0.71	2.65	3.3	0.004	0.73	0.0	0.05	18.88	0.00	2.552	7.21	3.86	13.0	87.0	0.0	-2.06	1.02	0.41	0.75	1.60	1872	258	3	0	0	0	0	logfile
✔	9JBP	61322	2025-02-10	2024-08-27	3.18	2.96	1.89	3.2	0.003	0.70	0.0	0.05	16.94	0.00	2.424	10.13	0.00	2.6	97.4	0.0	-0.69	0.39	0.69	2.11	3.2	0.004	0.62	0.0	0.05	17.23	0.00	2.531	9.09	8.06	2.6	97.4	0.0	-1.81	1.17	0.32	0.70	2.26	2022	246	12	0	48	0	0	logfile
✔	9JA6	61291	2025-02-11	2024-08-24	4.4	3.40	4.33	5.3	0.008	0.94	0.0	0.04	16.51	0.00	2.211	19.59	9.56	2.8	97.2	0.0	-1.98	0.69	0.60	—	5.3	0.002	0.61	0.0	0.04	12.99	0.00	2.394	7.46	0.00	0.7	99.3	0.0	3.13	1.55	0.71	0.76	—	4880	588	4	0	0	0	0	logfile
✔	9JA5	61290	2025-02-12	2024-08-24	2.7	3.43	2.71	3.3	0.014	1.15	0.0	0.06	14.30	0.01	2.117	13.83	0.00	12.9	87.1	0.0	-2.73	0.62	0.83	2.49	3.3	0.003	0.72	0.0	0.04	18.07	0.00	2.548	7.88	1.07	6.1	93.9	0.0	1.83	0.97	0.57	0.78	1.24	8469	1002	12	0	0	123	0	logfile
✔	9DBQ	46724	2025-02-14	2024-08-23	2.9	3.52	2.91	3.5	0.003	0.56	0.0	0.04	12.63	0.00	2.057	2.92	0.10	2.2	97.8	0.0	1.15	0.67	0.73	1.85	3.5	0.003	0.63	0.0	0.04	14.92	0.00	2.424	7.90	1.90	3.1	96.9	0.0	2.04	1.40	0.68	0.74	1.37	10062	1182	4	0	20	0	0	logfile
✔	9J8P	61237	2025-02-11	2024-08-21	3.21	3.65	—	1.5	0.006	0.90	0.0	0.05	20.97	0.01	2.235	10.53	0.00	5.4	94.6	0.0	-0.46	0.92	0.83	1.79	1.5	0.003	0.69	0.0	0.04	21.55	0.00	2.366	11.76	1.55	3.3	96.7	0.0	0.54	2.59	0.93	0.86	1.34	7061	623	3	106	1	0	0	logfile
✔	9D8P	46645	2025-02-11	2024-08-19	3.2	3.70	3.13	3.5	0.003	0.48	0.0	0.04	15.51	0.00	2.213	9.78	0.00	2.1	97.9	0.0	0.36	0.80	0.84	3.38	3.5	0.003	0.51	0.0	0.04	15.76	0.00	2.506	5.89	3.63	2.1	97.9	0.0	0.19	0.18	0.79	0.84	3.24	4073	537	4	0	0	0	0	logfile
✔	9J7V	61211	2025-02-10	2024-08-19	3.3	3.54	3.36	3.6	0.007	0.97	0.0	0.04	16.85	0.00	2.210	2.17	0.00	4.6	95.4	0.0	1.94	0.60	0.84	1.45	3.6	0.003	0.47	0.0	0.04	15.98	0.00	2.635	2.51	0.65	2.6	97.4	0.0	2.16	0.25	0.58	0.84	1.69	2975	352	2	0	8	0	0	logfile
✔	9D85	46630	2025-02-12	2024-08-18	3.59	3.91	3.62	3.5	0.005	1.21	6.0	0.08	21.01	0.02	0.994	27.16	0.33	6.4	93.4	0.1	-1.10	0.68	0.44	0.21	3.6	0.004	0.83	0.0	0.05	21.79	0.00	2.217	21.50	2.76	4.8	95.2	0.0	-1.67	1.65	0.75	0.60	0.96	7201	739	5	65	0	0	0	logfile

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