Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8Wo7	37681	2025-02-12	2023-10-06	2.9	3.17	2.85	3.2	0.007	0.69	0.0	0.04	13.01	0.00	2.107	7.94	0.00	2.7	97.3	0.0	1.23	0.64	0.86	2.77	3.2	0.003	0.59	0.0	0.04	15.05	0.00	2.572	6.78	1.75	3.2	96.7	0.2	1.96	0.36	0.62	0.87	2.25	8118	1080	4	0	4	0	0	logfile
✔	8UGY	42241	2025-02-12	2023-10-06	3.31	3.49	3.30	3.5	0.003	0.56	0.0	0.04	14.65	0.00	2.138	7.35	0.00	2.7	97.2	0.1	0.36	0.63	0.79	2.31	3.5	0.003	0.55	0.0	0.04	14.88	0.00	2.418	6.49	2.84	3.1	96.8	0.1	0.78	1.11	0.63	0.82	1.63	6970	864	5	0	6	1	0	logfile
✔	8WNW	37674	2025-02-10	2023-10-06	3.5	3.04	3.38	3.4	0.013	1.77	2.0	0.11	13.59	0.01	2.500	4.92	2.31	1.8	98.2	0.0	2.30	0.43	0.69	2.59	3.2	0.003	0.63	0.0	0.04	15.58	0.00	2.402	8.79	4.62	1.8	98.2	0.0	2.28	1.30	0.49	0.76	3.05	1400	173	2	0	3	1	0	logfile
✔	8UG4	42213	2025-02-12	2023-10-05	3.02	2.74	2.96	3.0	0.006	0.73	0.0	0.06	14.72	0.02	2.207	9.47	0.00	2.4	97.6	0.0	1.83	0.60	0.86	3.18	3.0	0.002	0.45	0.0	0.04	15.40	0.00	2.630	6.25	0.59	1.9	98.1	0.0	3.01	0.92	0.61	0.88	2.96	7802	972	2	0	0	0	0	logfile
✔	8UG6	42215	2025-02-11	2023-10-05	3.06	2.81	3.01	3.0	0.005	0.66	0.0	0.05	16.57	0.01	2.215	7.06	0.00	2.1	97.9	0.0	1.97	0.44	0.65	1.56	3.0	0.003	0.61	0.0	0.04	17.30	0.00	2.542	8.17	1.64	0.7	99.3	0.0	3.33	2.89	0.54	0.81	2.04	6242	786	2	0	0	0	0	logfile
✔	8UG8	42217	2025-02-11	2023-10-05	3.79	3.70	3.73	3.6	0.003	0.53	0.0	0.04	17.04	0.00	2.257	9.77	0.00	2.0	98.0	0.0	1.88	0.52	0.75	0.86	3.6	0.005	1.22	2.0	0.05	17.58	0.01	2.280	18.45	4.73	2.5	97.5	0.0	1.27	0.77	0.52	0.75	0.45	5916	750	2	0	0	0	0	logfile
✔	8UG5	42214	2025-02-11	2023-10-05	2.91	2.34	2.88	2.9	0.008	1.13	0.0	0.08	13.47	0.02	2.029	8.71	0.00	4.8	95.2	0.0	0.42	0.53	0.82	2.97	2.9	0.003	0.54	0.0	0.04	16.23	0.00	2.593	7.51	3.79	1.6	98.4	0.0	2.73	1.39	0.53	0.84	2.92	6160	764	2	0	0	0	0	logfile
✔	8UG7	42216	2025-02-11	2023-10-05	2.95	2.74	2.90	2.9	0.005	0.66	0.0	0.05	16.57	0.01	2.215	7.06	0.00	2.1	97.9	0.0	1.97	0.60	0.89	3.44	2.9	0.003	0.54	0.0	0.04	16.97	0.00	2.541	6.19	2.54	1.7	98.3	0.0	3.70	1.28	0.60	0.90	3.47	6242	786	2	0	0	0	0	logfile
✔	8UFE	42205	2025-02-11	2023-10-04	3.68	4.10	3.84	4.1	0.005	0.79	0.0	0.04	19.16	0.00	2.205	12.83	1.76	5.3	94.4	0.2	1.92	0.49	0.72	-0.41	4.1	0.003	0.67	0.0	0.04	18.34	0.00	2.473	11.71	4.71	4.7	95.1	0.2	1.80	0.37	0.54	0.74	-0.41	3449	470	2	0	1	0	0	logfile
✔	8UF7	42185	2025-02-11	2023-10-03	3.2	2.40	3.23	2.0	0.005	0.70	0.0	0.05	18.21	0.01	2.204	18.82	0.89	12.8	86.6	0.6	-2.23	0.68	0.67	1.77	2.1	0.005	0.75	0.0	0.05	18.59	0.01	2.484	15.84	8.05	13.6	85.8	0.6	-2.37	0.31	0.68	0.67	1.49	3927	514	3	0	0	0	0	logfile
✔	8WMi	37653	2025-02-15	2023-10-03	3.53	4.01	3.72	3.9	0.003	0.66	0.0	0.04	16.40	0.00	2.226	3.76	0.00	5.3	94.7	0.0	-1.01	0.74	0.77	1.61	3.9	0.002	0.56	0.0	0.04	17.40	0.00	2.532	4.33	1.13	5.3	94.7	0.0	-0.70	0.44	0.75	0.78	1.77	10763	1237	3	39	4	0	0	logfile
✔	8WM5	37641	2025-02-12	2023-10-03	3.04	3.42	3.11	3.4	0.007	0.77	0.0	0.04	18.60	0.01	1.284	12.25	0.00	4.3	95.6	0.1	1.57	0.66	0.85	2.35	3.4	0.003	0.55	0.0	0.04	16.73	0.00	2.376	9.74	2.39	1.8	98.2	0.0	2.52	0.92	0.58	0.85	2.03	7179	950	4	0	5	0	0	logfile
✔	8WM9	37646	2025-02-11	2023-10-03	3.53	2.45	3.48	2.2	0.006	0.91	0.0	0.06	12.83	0.00	2.182	4.34	0.00	4.3	95.7	0.0	-0.64	0.72	0.72	2.39	2.2	0.005	0.67	0.0	0.04	13.68	0.00	2.556	7.82	1.96	2.8	97.2	0.0	0.55	1.17	0.72	0.72	1.61	5879	719	5	0	10	0	0	logfile
✔	8WMA	37647	2025-02-10	2023-10-03	3.47	2.40	3.36	2.3	0.007	0.80	0.0	0.05	11.97	0.00	1.739	5.91	0.31	4.4	95.6	0.0	-0.62	0.68	0.73	3.00	2.0	0.004	0.65	0.0	0.04	15.41	0.00	2.522	7.03	1.86	3.4	96.6	0.0	0.53	0.47	0.70	0.74	2.08	3172	413	2	0	0	0	0	logfile
✔	8QPZ	18570	2025-02-11	2023-10-03	2.5	2.74	2.49	2.9	0.004	0.70	0.0	0.05	10.84	0.00	2.495	9.26	8.57	0.0	100.0	0.0	-1.32	0.50	0.78	4.05	2.9	0.006	0.65	0.0	0.05	12.95	0.00	2.528	4.15	8.10	6.1	93.9	0.0	-2.39	0.41	0.52	0.81	4.63	4116	612	12	0	0	0	0	logfile
✔	8QPF	18549	2025-02-13	2023-10-01	2.53	3.55	2.56	3.3	0.005	0.84	0.0	0.05	14.75	0.01	2.257	3.31	0.75	2.3	97.5	0.3	-0.50	0.78	0.84	3.52	3.3	0.003	0.60	0.0	0.04	15.68	0.00	2.518	7.24	1.28	2.5	97.2	0.3	2.87	1.03	0.65	0.84	3.35	9085	1167	6	0	0	202	0	logfile
✔	8WLJ	37621	2025-02-11	2023-09-30	3.6	3.72	3.64	3.7	0.005	0.82	1.0	0.05	14.05	0.01	2.283	8.82	0.00	2.5	97.5	0.0	0.69	0.50	0.75	2.07	3.7	0.003	0.71	0.0	0.04	16.75	0.00	2.504	8.33	3.01	2.3	97.7	0.0	1.43	1.06	0.49	0.73	2.03	4035	530	2	0	0	0	0	logfile
✔	8WLR	37629	2025-02-11	2023-09-30	3.12	3.43	3.11	3.3	0.003	0.53	0.0	0.04	16.12	0.00	2.266	4.86	0.14	1.9	98.1	0.0	0.16	0.70	0.88	3.10	3.3	0.002	0.52	0.0	0.04	16.21	0.00	2.330	2.87	1.30	1.1	98.9	0.0	0.89	0.35	0.73	0.89	2.87	6431	792	4	0	2	0	0	logfile
✔	8WLK	37622	2025-02-10	2023-09-30	3.37	3.55	3.44	3.6	0.006	0.91	0.0	0.05	15.66	0.01	2.227	9.42	0.00	2.6	97.4	0.0	-0.01	0.44	0.72	1.86	3.6	0.004	0.75	0.0	0.04	17.49	0.00	2.509	10.62	6.31	2.1	97.9	0.0	0.91	1.04	0.43	0.74	2.21	2873	383	2	0	1	0	0	logfile
✔	8WLL	37623	2025-02-10	2023-09-30	3.74	3.82	3.77	3.9	0.024	1.06	0.0	0.10	13.07	0.01	2.238	10.14	0.00	2.9	97.1	0.0	0.58	0.50	0.76	1.39	3.8	0.004	0.91	0.0	0.05	15.88	0.00	2.545	10.68	5.40	3.4	96.6	0.0	0.76	1.28	0.49	0.77	0.17	2815	389	2	0	1	0	0	logfile

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