Table showing results for March 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	8G09	29650	2023-03-17	2023-01-31	3.1	3.88	3.23	3.2	0.005	0.70	0.0	0.23	5.31	0.00	1.766	0.75	0.00	3.1	96.9	0.0	0.54	0.74	0.70	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	19599	4860	26	0	10	0	0	logfile
✔	8G0B	29652	2023-03-12	2023-01-31	2.8	2.96	2.80	3.0	0.007	1.12	0.0	0.04	14.68	0.00	2.221	7.63	0.14	2.9	97.1	0.0	0.73	0.67	0.83	2.51	3.0	0.003	0.63	0.0	0.04	15.63	0.01	2.111	11.64	1.29	2.4	97.6	0.0	1.21	0.39	0.66	0.85	1.86	7758	1044	19	0	7	0	0	logfile
✔	8G07	29648	2023-03-12	2023-01-31	2.8	3.02	2.81	3.0	0.008	0.81	1.0	0.04	14.12	0.01	2.253	7.46	1.15	2.5	97.5	0.0	1.07	0.64	0.80	2.47	3.1	0.003	0.54	0.0	0.04	15.72	0.00	2.193	11.42	2.16	1.6	98.4	0.0	1.58	0.42	0.65	0.83	1.67	7467	1045	13	0	1	0	0	logfile
✔	8G0C	29653	2023-03-17	2023-01-31	2.8	3.69	2.84	2.8	0.005	0.85	0.0	0.17	6.80	0.00	1.814	0.39	0.00	2.6	97.3	0.0	0.98	0.69	0.67	—	2.8	0.006	0.80	0.0	0.07	5.96	0.00	1.778	2.27	0.00	9.0	91.0	0.0	0.67	1.21	0.79	0.80	—	19874	4860	30	0	16	0	0	logfile
✔	8G0D	29654	2023-03-17	2023-01-31	2.9	3.84	3.02	2.9	0.005	0.87	0.0	0.18	6.79	0.00	1.844	0.67	0.00	2.6	97.3	0.0	0.74	0.68	0.65	—	2.9	0.006	0.86	0.0	0.09	6.89	0.00	1.748	3.21	0.00	10.6	89.3	0.1	0.01	1.63	0.80	0.81	—	19874	4860	30	0	16	0	0	logfile
✘	8G08	29649	2023-03-17	2023-01-31	2.8	3.66	2.85	3.1	0.005	0.68	0.0	0.23	5.00	0.00	1.824	0.59	0.00	2.4	97.6	0.0	1.01	0.74	0.70	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	19595	4859	26	0	10	0	0	logfile
✔	8FXG	29532	2023-03-17	2023-01-24	3.44	2.87	3.32	3.5	0.006	0.72	0.0	0.19	15.43	0.00	2.239	3.51	0.00	3.0	97.0	0.0	2.02	0.73	0.85	3.20	3.5	0.002	0.47	0.0	0.03	15.04	0.00	2.245	2.52	0.11	2.9	97.1	0.0	2.39	1.30	0.73	0.88	2.59	18481	2384	12	0	13	4	0	logfile
✔	8FX8	29526	2023-03-16	2023-01-24	3.26	3.88	3.11	3.5	0.005	0.56	0.0	0.04	13.47	0.00	2.256	4.66	0.00	3.4	96.6	0.0	1.64	0.77	0.84	3.57	3.5	0.002	0.52	0.0	0.04	14.28	0.00	2.252	3.96	0.12	3.6	96.4	0.0	2.30	0.29	0.78	0.86	3.26	18077	2388	12	0	5	4	0	logfile
✔	8FWK	29511	2023-03-13	2023-01-22	3.5	4.25	3.71	4.0	0.005	1.07	2.0	0.06	12.40	0.01	2.289	13.87	1.29	11.6	87.2	1.2	-4.60	0.66	0.72	0.53	4.0	0.003	0.74	0.0	0.04	15.19	0.00	2.133	11.92	0.20	11.7	88.1	0.3	-0.86	2.37	0.68	0.77	0.78	9462	1194	2	0	0	0	0	logfile
✔	8C8P	16490	2023-03-11	2023-01-20	4.1	5.09	4.13	5.5	0.002	0.67	0.0	0.05	13.50	0.00	2.267	6.06	0.00	2.6	97.4	0.0	-2.08	0.66	0.67	—	5.0	0.003	0.74	0.0	0.04	13.37	0.00	2.169	18.39	0.00	4.8	95.2	0.0	-1.28	1.17	0.68	0.71	—	2449	314	2	0	0	0	0	logfile
✔	8BYP	16330	2023-03-17	2022-12-15	3.12	3.39	3.21	3.3	0.004	0.64	0.0	0.05	14.53	0.00	2.198	9.76	0.40	6.2	93.8	0.0	-1.08	0.68	0.79	3.25	3.3	0.003	0.56	0.0	0.04	16.11	0.00	2.146	10.67	0.13	5.7	94.3	0.0	-0.46	1.11	0.70	0.82	2.95	19836	2421	2	0	0	0	0	logfile
✔	8HR7	34962	2023-03-16	2022-12-15	3.96	4.06	4.11	3.9	0.002	0.52	0.0	0.04	14.32	0.00	1.995	11.90	0.07	3.6	96.4	0.0	-0.25	0.74	0.76	1.48	3.9	0.005	0.67	0.0	0.04	16.33	0.00	2.011	16.92	0.32	5.8	94.2	0.0	0.03	1.11	0.74	0.77	1.28	121662	15154	19	0	0	0	0	logfile
✔	8C00	16347	2023-03-14	2022-12-15	2.9	3.49	—	2.8	0.007	0.82	0.0	0.06	14.52	0.01	2.091	3.29	0.84	3.4	96.3	0.3	-0.72	0.88	0.89	3.72	2.8	0.003	0.63	0.0	0.04	14.64	0.00	2.140	6.42	1.31	3.1	96.8	0.1	0.49	1.10	0.88	0.89	2.77	63117	4186	26	1425	0	0	0	logfile
✔	8FHT	29103	2023-03-12	2022-12-15	3.02	3.34	3.05	3.2	0.004	0.63	3.0	0.05	12.98	0.00	2.220	6.63	0.96	1.8	98.2	0.0	2.06	0.60	0.80	2.43	3.3	0.003	0.50	0.0	0.04	14.20	0.00	2.169	6.85	0.41	2.3	97.7	0.0	2.48	0.39	0.57	0.80	2.13	7006	936	4	0	4	0	0	logfile
✔	8FHP	29098	2023-03-12	2022-12-14	3.04	3.38	3.13	3.3	0.009	0.80	0.0	0.05	13.08	0.01	2.227	5.38	0.39	3.8	96.2	0.0	-1.88	0.61	0.85	2.63	3.3	0.003	0.53	0.0	0.04	15.04	0.00	2.254	3.07	0.39	2.5	97.5	0.0	0.71	0.34	0.56	0.84	2.14	7306	950	4	0	4	0	0	logfile
✔	8FHQ	29099	2023-03-12	2022-12-14	2.81	3.05	2.83	3.1	0.008	0.82	0.0	0.05	13.57	0.01	2.303	4.02	0.65	3.5	96.5	0.0	-1.14	0.62	0.86	3.75	3.1	0.003	0.50	0.0	0.04	14.90	0.00	2.261	3.14	0.52	2.3	97.7	0.0	0.50	0.90	0.62	0.86	3.57	7306	950	4	0	4	0	0	logfile
✔	8FHR	29100	2023-03-12	2022-12-14	2.9	3.23	2.98	3.2	0.009	0.82	0.0	0.05	13.01	0.01	2.289	5.32	0.65	4.2	95.8	0.0	-1.64	0.63	0.86	4.29	3.2	0.002	0.49	0.0	0.04	14.64	0.00	2.217	3.88	1.17	2.4	97.6	0.0	0.92	0.93	0.59	0.85	2.96	7306	950	4	0	4	0	0	logfile
✘	8FHD	29082	2023-03-14	2022-12-14	3.1	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	12686	1467	6	0	35	0	0	logfile
✔	8FHo	29097	2023-03-15	2022-12-14	2.95	3.32	3.23	3.2	0.009	0.94	0.0	0.05	14.06	0.01	2.207	5.59	1.24	4.6	95.4	0.0	-2.02	0.66	0.87	4.05	3.2	0.002	0.55	0.0	0.04	15.78	0.00	2.178	5.04	1.24	2.6	97.4	0.0	0.31	0.40	0.66	0.88	3.21	13624	1723	5	0	6	0	0	logfile
✔	8FHN	29096	2023-03-15	2022-12-14	3.0	3.42	3.14	3.4	0.009	0.99	1.0	0.06	14.56	0.01	2.199	6.72	2.21	4.7	95.3	0.0	-1.79	0.69	0.88	3.88	3.4	0.003	0.54	0.0	0.04	16.06	0.00	2.189	5.23	2.07	2.5	97.4	0.1	0.29	0.40	0.66	0.88	3.04	13613	1722	5	0	4	0	0	logfile

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