Table showing results for March 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9HXA	52458	2025-03-05	2025-01-07	3.7	3.04	3.74	3.4	0.006	0.81	0.0	0.06	10.52	0.00	2.589	0.00	0.00	6.7	93.3	0.0	-2.61	0.24	0.67	5.09	3.7	0.003	0.64	0.0	0.05	15.26	0.00	2.659	7.50	10.47	9.2	90.8	0.0	-2.21	0.83	0.24	0.67	4.86	848	124	2	0	0	0	0	logfile
✔	9MQY	48544	2025-03-11	2025-01-06	3.0	3.64	3.04	3.5	0.007	0.75	0.0	0.05	12.52	0.01	2.375	0.79	0.67	2.6	97.4	0.0	-1.16	0.76	0.87	6.11	3.5	0.005	0.60	0.0	0.05	13.51	0.00	2.603	2.67	2.00	1.6	98.4	0.0	0.80	1.34	0.74	0.87	5.58	6448	894	4	0	2	0	0	logfile
✔	9MQH	48524	2025-03-05	2025-01-03	3.9	4.08	3.69	4.0	0.003	0.59	0.0	0.04	15.16	0.00	2.206	4.68	3.92	3.2	96.8	0.0	1.41	0.55	0.80	1.35	4.0	0.003	0.56	0.0	0.04	16.02	0.00	2.638	4.44	5.39	2.9	97.1	0.0	2.34	0.36	0.54	0.79	0.74	2074	281	1	0	0	0	0	logfile
✔	9LAE	62925	2025-03-06	2025-01-02	3.46	3.62	3.40	3.6	0.006	0.73	0.0	0.05	13.67	0.00	2.120	8.61	0.00	8.0	91.8	0.2	-3.66	0.52	0.71	3.84	3.6	0.006	0.71	0.0	0.05	16.47	0.00	2.518	9.43	3.84	7.6	92.4	0.0	-1.80	0.90	0.71	0.88	3.63	5000	645	6	0	1	0	0	logfile
✔	9HVW	52444	2025-03-13	2025-01-02	3.1	3.42	3.15	3.4	0.004	0.82	0.0	0.05	16.16	0.01	2.573	6.17	1.53	4.7	95.3	0.0	-2.70	0.56	0.61	0.92	3.4	0.004	0.63	0.0	0.04	17.18	0.00	2.521	12.29	4.60	5.9	94.1	0.0	-1.77	1.12	0.65	0.76	2.25	8950	1149	8	0	0	0	0	logfile
✔	9MMV	48404	2025-03-06	2024-12-20	3.79	2.98	3.74	1.4	0.004	0.81	0.0	0.05	15.10	0.01	1.340	10.87	1.08	3.4	96.2	0.4	1.43	0.89	0.84	2.37	1.5	0.004	0.66	0.0	0.04	15.07	0.00	2.519	6.36	5.66	4.8	95.1	0.1	0.77	0.61	0.90	0.84	2.60	4968	837	4	0	0	0	0	logfile
✔	9L1S	62753	2025-03-12	2024-12-15	3.0	3.20	3.21	3.2	0.003	0.66	0.0	0.04	14.05	0.01	1.945	9.32	0.24	6.6	93.4	0.0	-2.12	0.71	0.75	2.11	3.2	0.003	0.72	0.0	0.04	16.68	0.00	2.523	7.92	2.47	6.7	93.3	0.0	-1.33	0.60	0.72	0.78	2.53	7584	989	3	0	0	0	0	logfile
✘	9HNW	52316	2025-03-14	2024-12-11	3.04	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9349	1178	6	0	2	0	0	logfile
✔	9KQE	62501	2025-03-05	2024-11-25	3.0	3.27	3.03	3.2	0.008	0.87	0.0	0.05	13.46	0.01	2.237	9.43	1.68	3.3	96.7	0.0	-2.23	0.53	0.78	2.13	3.2	0.004	0.81	0.0	0.04	16.83	0.00	2.579	11.17	2.35	1.4	98.6	0.0	1.57	1.48	0.55	0.80	1.15	2795	373	2	0	1	0	0	logfile
✔	9KQA	62498	2025-03-05	2024-11-25	3.28	3.78	3.25	3.7	0.005	0.79	0.0	0.04	17.32	0.01	2.211	11.22	0.35	5.7	94.3	0.0	-2.72	0.46	0.72	1.02	3.7	0.003	0.71	0.0	0.04	17.55	0.00	2.510	6.23	2.80	3.2	96.8	0.0	1.60	0.55	0.47	0.73	0.81	2783	377	2	0	1	0	0	logfile
✔	9KoM	62478	2025-03-05	2024-11-20	3.2	3.48	3.34	3.5	0.004	0.79	0.0	0.04	17.93	0.00	2.245	6.15	0.81	4.6	95.4	0.0	0.32	0.26	0.66	1.35	3.5	0.002	0.56	0.0	0.04	18.54	0.00	2.621	4.83	6.05	2.8	97.2	0.0	1.72	1.24	0.39	0.83	0.94	2268	291	1	0	0	0	0	logfile
✔	9HGR	52165	2025-03-05	2024-11-20	2.7	2.06	2.31	2.7	0.003	0.47	0.0	0.05	14.29	0.00	2.569	2.04	0.00	3.0	97.0	0.0	-3.44	0.27	0.76	6.46	2.7	0.004	0.52	0.0	0.05	16.15	0.00	2.627	0.51	5.32	8.2	91.8	0.0	-3.74	0.41	0.27	0.77	6.92	960	142	2	0	0	0	0	logfile
✔	9HGS	52166	2025-03-05	2024-11-20	3.0	2.93	2.85	3.2	0.010	0.99	0.0	0.08	18.25	0.01	2.341	0.92	1.89	11.3	88.7	0.0	-4.52	0.26	0.73	2.80	3.2	0.002	0.45	0.0	0.05	18.09	0.00	2.666	1.85	3.77	9.9	90.1	0.0	-4.19	0.48	0.26	0.76	4.30	526	75	1	0	0	0	0	logfile
✔	9EF0	40857	2025-03-06	2024-11-19	3.33	3.49	3.32	3.5	0.002	0.54	0.0	0.04	16.80	0.00	2.198	10.63	0.96	3.6	96.4	0.0	-0.60	0.70	0.79	1.99	3.5	0.003	0.62	0.0	0.04	17.71	0.00	2.491	10.53	2.87	5.1	94.9	0.0	-0.49	0.83	0.70	0.80	2.34	4993	613	2	0	2	0	0	logfile
✔	9HBB	52014	2025-03-12	2024-11-06	3.0	3.19	2.92	3.2	0.011	1.88	0.0	0.09	10.83	0.01	2.495	0.28	0.00	7.2	92.8	0.0	-1.24	0.42	0.82	6.08	3.2	0.003	0.55	0.0	0.05	15.44	0.00	2.470	1.41	1.52	3.2	96.8	0.0	-1.56	1.40	0.43	0.85	4.86	7074	456	6	0	0	0	3606	logfile
✔	9KBF	62223	2025-03-06	2024-10-30	3.74	3.96	3.77	3.9	0.004	0.64	0.0	0.05	14.54	0.00	2.199	6.95	0.20	7.4	92.6	0.0	-1.16	0.71	0.80	1.76	3.9	0.004	0.63	0.0	0.04	16.71	0.00	2.469	13.12	1.96	5.3	94.7	0.0	0.01	0.76	0.72	0.81	1.53	4587	569	2	0	0	0	0	logfile
✔	9H76	51912	2025-03-06	2024-10-26	2.9	3.57	2.91	3.4	0.005	0.59	0.0	0.04	15.75	0.01	2.053	5.90	0.23	1.7	98.3	0.0	2.14	0.68	0.90	3.66	3.4	0.004	0.64	0.0	0.04	16.50	0.00	2.475	6.85	2.96	2.0	98.0	0.0	2.07	0.60	0.64	0.87	3.27	4157	547	3	0	0	0	0	logfile
✔	9K7N	62150	2025-03-06	2024-10-24	3.3	3.61	3.28	3.6	0.007	1.23	1.0	0.09	12.28	0.01	2.115	9.25	1.08	1.8	98.2	0.0	2.30	0.48	0.74	1.88	3.6	0.003	0.61	0.0	0.04	15.73	0.00	2.572	8.44	2.80	1.8	98.2	0.0	1.75	0.99	0.53	0.81	0.88	4332	545	2	0	2	0	0	logfile
✔	9K7B	62147	2025-03-06	2024-10-23	2.75	2.95	2.74	3.0	0.008	1.40	0.0	0.10	14.68	0.01	1.784	20.92	1.71	1.1	98.9	0.0	1.92	0.43	0.67	3.19	3.0	0.003	0.60	0.0	0.04	14.43	0.00	2.341	8.48	0.86	2.8	97.2	0.0	1.60	0.93	0.60	0.86	3.05	4522	544	2	0	11	19	0	logfile
✔	9H5J	51886	2025-03-05	2024-10-22	2.72	2.79	2.74	2.9	0.012	1.96	0.0	0.08	11.32	0.02	2.556	0.00	0.00	6.2	92.1	1.7	-2.25	0.43	0.87	6.55	2.9	0.003	0.75	0.0	0.05	17.33	0.01	2.599	4.32	3.70	6.2	93.8	0.0	-2.96	0.83	0.45	0.91	4.94	3300	432	6	0	0	0	0	logfile

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