Table showing results for March 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9CAL	45395	2025-03-11	2024-06-17	3.15	2.36	3.09	2.1	0.004	0.68	0.0	0.04	15.36	0.01	2.136	5.47	0.00	3.9	96.1	0.0	-0.07	0.77	0.80	2.39	2.1	0.003	0.55	0.0	0.04	17.55	0.00	2.243	5.63	1.80	4.2	95.8	0.0	0.64	0.31	0.80	0.83	2.27	6268	773	5	10	1	0	0	logfile
✔	9CA4	45380	2025-03-11	2024-06-16	3.01	2.50	3.43	2.2	0.005	0.87	1.0	0.04	14.82	0.01	2.091	6.79	0.00	5.2	94.6	0.1	-0.38	0.76	0.79	2.74	2.2	0.004	0.62	0.0	0.04	17.20	0.00	2.180	5.90	2.55	5.0	95.0	0.0	0.21	0.93	0.78	0.81	1.99	6230	773	5	8	2	0	0	logfile
✘	8ZYA	60560	2025-03-12	2024-06-16	2.5	3.15	2.97	3.1	0.004	0.73	0.0	0.05	14.03	0.01	2.290	4.34	0.13	4.5	95.4	0.1	-1.47	0.58	0.75	3.06	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7306	884	6	0	8	0	0	logfile
✔	9CA1	45379	2025-03-11	2024-06-16	3.26	2.47	3.27	2.2	0.004	0.59	0.0	0.04	15.56	0.01	2.120	5.31	0.00	4.2	95.7	0.1	0.28	0.77	0.80	2.18	2.2	0.003	0.58	0.0	0.04	17.60	0.00	2.094	5.79	3.15	4.0	96.0	0.0	0.22	0.31	0.79	0.82	1.62	6265	773	5	10	2	0	0	logfile
✔	9CA0	45378	2025-03-11	2024-06-16	3.48	2.47	3.49	2.2	0.004	0.58	0.0	0.04	14.95	0.01	2.104	6.67	0.15	4.2	95.8	0.0	-0.73	0.77	0.78	2.35	2.2	0.003	0.55	0.0	0.04	17.27	0.00	2.493	6.27	3.00	3.9	96.1	0.0	-0.44	0.35	0.79	0.81	1.61	6265	773	5	10	1	0	0	logfile
✘	9C9Y	45376	2025-03-11	2024-06-16	3.35	2.51	3.35	2.2	0.005	0.66	0.0	0.04	16.02	0.01	2.041	6.79	0.15	6.0	93.9	0.1	-0.01	0.77	0.79	2.18	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6225	773	4	8	2	0	0	logfile
✔	9C9U	45371	2025-03-05	2024-06-15	4.5	4.04	3.57	3.8	0.011	1.48	0.0	0.07	15.52	0.01	2.048	19.72	0.00	10.7	89.3	0.0	-3.13	0.72	0.61	—	3.8	0.003	1.23	0.0	0.09	16.30	0.01	2.288	19.21	0.00	11.3	88.7	0.0	-3.25	1.85	0.78	0.76	—	3018	444	18	0	0	0	0	logfile
✔	8ZWJ	60529	2025-03-05	2024-06-13	3.1	2.80	2.16	3.2	0.006	0.74	0.0	0.05	15.84	0.00	2.218	14.51	0.00	10.1	89.9	0.0	-4.10	0.44	0.86	4.88	3.2	0.002	0.45	0.0	0.05	15.68	0.00	2.572	2.33	2.96	7.9	92.1	0.0	-2.11	1.29	0.41	0.85	4.61	2760	378	8	6	0	0	0	logfile
✔	8ZWH	60527	2025-03-05	2024-06-13	2.5	3.26	—	3.0	0.011	0.91	0.0	0.06	9.45	0.00	2.284	18.21	0.00	3.8	96.2	0.0	-4.12	0.42	0.85	2.37	3.0	0.003	0.54	0.0	0.05	11.81	0.00	2.634	6.21	1.32	6.9	93.1	0.0	-3.38	1.17	0.43	0.85	3.48	2268	330	6	0	0	0	0	logfile
✔	9C91	45359	2025-03-13	2024-06-13	2.84	2.98	2.80	39.0	0.004	0.66	0.0	0.04	18.11	0.00	2.194	11.02	2.64	3.5	96.3	0.2	0.30	0.06	0.00	0.50	39.0	0.004	0.81	0.0	0.05	18.67	0.01	2.256	14.94	3.63	5.2	94.7	0.1	-0.21	1.28	0.09	0.04	0.31	8784	1088	4	0	6	0	0	logfile
✔	8ZWM	60533	2025-03-05	2024-06-13	3.2	3.28	2.96	3.3	0.005	0.67	0.0	0.05	11.92	0.00	2.167	4.43	0.00	2.3	97.7	0.0	-3.69	0.35	0.90	6.45	3.3	0.003	0.56	0.0	0.05	14.66	0.00	2.611	3.43	1.53	2.5	97.5	0.0	-2.45	1.25	0.33	0.91	6.11	3435	453	6	0	0	0	0	logfile
✔	8ZWi	60528	2025-03-05	2024-06-13	3.0	2.75	2.10	3.2	0.011	0.86	0.0	0.06	11.26	0.00	2.261	8.83	0.00	6.8	93.2	0.0	-3.70	0.44	0.86	5.14	3.2	0.007	1.50	0.0	0.05	15.19	0.00	2.615	5.19	1.94	2.3	97.7	0.0	-1.91	0.90	0.43	0.86	5.50	2526	366	6	0	0	0	0	logfile
✔	8ZWL	60532	2025-03-05	2024-06-13	3.4	3.16	3.10	3.5	0.008	0.92	0.0	0.06	11.35	0.00	2.273	8.06	0.00	5.4	94.6	0.0	-4.31	0.30	0.81	4.89	3.4	0.004	0.66	0.0	0.05	13.64	0.00	2.615	4.67	2.27	2.3	97.7	0.0	-3.02	0.51	0.33	0.85	4.75	3468	456	6	0	0	0	0	logfile
✔	8ZX6	60539	2025-03-05	2024-06-13	3.5	3.02	2.57	3.5	0.004	0.77	0.0	0.05	12.49	0.00	2.338	7.64	0.00	2.5	97.5	0.0	-4.38	0.32	0.81	5.08	3.5	0.006	0.79	0.0	0.05	14.26	0.00	2.631	6.51	1.52	10.6	89.4	0.0	-3.65	0.72	0.35	0.84	5.17	3468	456	6	0	0	0	0	logfile
✔	8ZWK	60530	2025-03-05	2024-06-13	3.4	2.76	2.78	3.4	0.003	0.60	0.0	0.05	16.32	0.00	2.253	13.62	0.00	8.2	91.8	0.0	-5.39	0.34	0.79	3.91	3.4	0.003	0.60	0.0	0.05	17.06	0.00	2.600	6.09	6.67	8.2	91.8	0.0	-3.62	1.50	0.36	0.82	4.52	2760	378	8	6	0	0	0	logfile
✔	9FoR	50628	2025-03-05	2024-06-12	2.75	2.54	2.60	2.8	0.012	2.11	5.0	0.10	12.86	0.01	2.496	1.38	3.17	7.4	91.5	1.1	-5.01	0.49	0.92	7.55	2.7	0.004	0.95	0.0	0.05	16.02	0.01	2.621	0.77	1.90	7.9	92.1	0.0	-5.31	0.41	0.53	0.91	6.30	3405	490	10	0	0	0	0	logfile
✔	9FoF	50621	2025-03-06	2024-06-11	2.9	2.55	2.79	3.2	0.011	1.53	6.0	0.08	13.93	0.01	2.332	9.79	1.56	4.2	94.8	1.0	-4.04	0.27	0.57	3.42	2.8	0.004	0.89	0.0	0.04	17.53	0.00	2.621	2.01	1.56	7.5	92.5	0.0	-4.72	1.98	0.51	0.89	5.51	4176	600	12	0	0	0	0	logfile
✔	9C7U	45294	2025-03-12	2024-06-11	3.65	4.10	3.62	4.0	0.003	0.61	0.0	0.04	16.99	0.00	2.138	11.43	0.29	9.2	90.8	0.0	-0.72	0.71	0.83	2.04	4.0	0.004	0.63	0.0	0.04	17.53	0.00	2.539	10.38	5.96	9.6	90.4	0.0	-0.60	0.31	0.69	0.83	1.94	6848	896	4	0	1	0	0	logfile
✔	9FNB	50587	2025-03-06	2024-06-10	2.64	2.64	2.35	2.6	0.008	1.34	0.0	0.16	15.19	0.01	2.042	3.52	0.79	6.8	93.2	0.0	-2.48	0.52	0.93	6.97	2.6	0.005	0.68	0.0	0.05	15.61	0.00	2.510	5.82	0.79	6.4	93.6	0.0	-2.31	0.86	0.50	0.92	6.35	4568	540	8	0	16	0	0	logfile
✔	9FND	50590	2025-03-06	2024-06-10	4.0	4.20	3.92	4.1	0.002	0.42	0.0	0.04	8.17	0.00	2.291	6.54	0.59	2.6	97.4	0.0	1.57	0.59	0.74	—	4.1	0.003	0.65	0.0	0.04	14.43	0.00	2.340	10.01	2.56	3.4	96.6	0.0	0.05	3.95	0.61	0.74	—	4914	647	2	0	0	0	0	logfile

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