Table showing results for March 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9iJ3	60614	2025-03-11	2024-06-21	2.6	2.95	2.80	3.0	0.005	0.99	0.0	0.05	20.45	0.01	1.968	11.06	1.20	8.8	91.1	0.1	-2.04	0.59	0.61	1.17	3.0	0.005	0.75	0.0	0.05	20.39	0.01	2.124	19.02	3.90	10.1	89.7	0.1	-1.56	0.45	0.56	0.65	1.42	7005	738	4	51	1	0	0	logfile
✔	9iJ2	60613	2025-03-05	2024-06-21	3.9	4.21	4.00	4.2	0.005	1.13	0.0	0.06	22.17	0.01	2.273	9.61	0.32	9.8	90.2	0.0	-3.30	0.59	0.49	1.13	4.1	0.003	0.84	0.0	0.04	21.96	0.00	2.537	18.79	5.06	9.5	90.2	0.3	-2.30	1.26	0.61	0.51	0.31	3729	351	3	43	0	0	0	logfile
✔	9iJ1	60612	2025-03-12	2024-06-21	3.2	3.65	3.54	3.7	0.005	1.08	0.0	0.06	20.53	0.01	2.099	7.65	0.88	7.6	92.4	0.0	-2.66	0.59	0.60	1.31	3.7	0.003	0.77	0.0	0.05	20.64	0.01	2.108	17.86	5.71	7.6	92.4	0.0	-1.96	0.46	0.59	0.62	0.83	7056	755	4	47	1	0	0	logfile
✔	9iJ4	60615	2025-03-12	2024-06-21	2.7	3.01	2.82	3.0	0.006	0.91	0.0	0.05	19.91	0.01	1.731	8.91	0.88	6.5	93.3	0.1	-1.89	0.62	0.65	1.52	3.0	0.004	0.70	0.0	0.05	20.15	0.01	2.355	14.27	3.09	6.5	93.3	0.1	-1.09	0.38	0.59	0.69	2.02	7129	755	4	51	1	0	0	logfile
✔	8ZYN	60573	2025-03-11	2024-06-18	3.27	3.51	3.25	3.4	0.003	0.56	0.0	0.04	15.25	0.00	2.256	5.78	0.86	2.1	97.9	0.0	1.18	0.59	0.83	1.15	3.5	0.003	0.56	0.0	0.04	15.67	0.00	2.627	5.34	3.46	2.8	97.2	0.0	1.22	0.35	0.58	0.83	1.14	6640	840	4	0	0	0	0	logfile
✔	9CBB	45421	2025-03-12	2024-06-18	4.15	4.29	4.00	4.2	0.007	0.92	0.0	0.04	14.26	0.01	2.221	3.12	0.00	6.2	93.8	0.0	-2.08	0.49	0.73	—	4.2	0.003	0.63	0.0	0.04	14.04	0.00	2.379	7.88	0.00	7.3	92.7	0.0	-0.08	0.96	0.49	0.74	—	7356	470	2	0	1	0	3733	logfile
✔	8ZYV	60580	2025-03-13	2024-06-18	3.12	2.96	3.01	3.2	0.003	0.49	0.0	0.03	17.75	0.00	2.173	7.29	0.43	1.6	98.4	0.0	3.33	0.60	0.82	1.10	3.2	0.004	0.52	0.0	0.04	17.90	0.00	2.413	7.73	2.77	2.2	97.8	0.0	3.63	0.25	0.57	0.81	0.94	8913	1174	10	0	2	5	0	logfile
✔	8ZYW	60581	2025-03-13	2024-06-18	3.43	3.41	3.36	3.6	0.003	0.55	0.0	0.04	17.93	0.00	2.109	8.67	0.32	1.7	98.3	0.0	3.05	0.60	0.78	0.40	3.6	0.003	0.49	0.0	0.04	18.36	0.00	2.502	6.57	2.77	1.7	98.3	0.0	3.90	0.27	0.56	0.79	0.54	8910	1174	10	0	0	4	0	logfile
✘	9CB3	45413	2025-03-06	2024-06-18	3.47	3.78	3.64	3.8	0.015	1.61	1.0	0.05	18.76	0.01	1.293	12.53	1.46	5.0	95.0	0.0	0.03	0.57	0.68	1.15	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4995	672	3	0	0	0	0	logfile
✔	9CAX	45406	2025-03-05	2024-06-18	3.37	3.55	3.26	3.5	0.005	0.92	0.0	0.05	16.47	0.01	2.234	5.04	0.00	4.5	95.3	0.2	-2.36	0.61	0.83	2.06	3.5	0.003	0.68	0.0	0.04	17.26	0.00	2.499	8.31	2.58	4.1	95.7	0.2	1.96	0.51	0.62	0.85	2.17	3611	470	1	0	0	0	0	logfile
✔	8ZZ0	60585	2025-03-13	2024-06-18	3.43	3.30	3.36	3.5	0.003	0.58	0.0	0.04	17.58	0.01	2.123	9.76	0.00	1.9	98.1	0.0	2.96	0.67	0.80	0.46	3.5	0.003	0.54	0.0	0.04	17.85	0.00	2.506	7.28	1.17	1.6	98.4	0.0	3.88	1.40	0.66	0.78	0.51	8914	1174	10	0	0	3	0	logfile
✔	8ZYQ	60576	2025-03-11	2024-06-18	3.18	3.41	3.17	3.4	0.005	0.59	0.0	0.04	16.95	0.00	2.234	6.78	0.46	2.8	97.2	0.0	1.48	0.57	0.85	2.58	3.4	0.003	0.56	0.0	0.04	16.22	0.00	2.514	5.69	2.73	2.7	97.3	0.0	1.68	0.37	0.56	0.85	2.67	6329	796	5	0	1	0	0	logfile
✔	8ZYo	60574	2025-03-11	2024-06-18	3.29	3.53	3.28	3.5	0.005	0.68	0.0	0.04	17.02	0.00	2.227	8.41	0.46	2.6	97.4	0.0	1.70	0.56	0.85	1.85	3.5	0.002	0.52	0.0	0.04	16.49	0.00	2.552	5.63	3.41	2.3	97.7	0.0	2.36	0.31	0.57	0.84	1.67	6238	785	5	0	1	0	0	logfile
✔	8ZYZ	60584	2025-03-13	2024-06-18	3.16	2.82	3.04	3.1	0.004	0.53	0.0	0.04	18.05	0.00	2.087	8.66	0.11	2.1	97.9	0.0	3.30	0.60	0.80	1.20	3.1	0.003	0.49	0.0	0.04	18.11	0.00	2.526	7.45	1.70	2.0	98.0	0.0	4.18	1.38	0.56	0.76	1.35	8918	1174	12	0	2	5	0	logfile
✔	9CAH	45391	2025-03-12	2024-06-17	3.16	2.35	3.20	2.1	0.003	0.61	0.0	0.04	14.90	0.00	2.049	8.60	0.13	7.2	92.6	0.2	-0.12	0.76	0.78	2.31	2.1	0.003	0.64	0.0	0.04	17.02	0.00	2.129	7.62	2.29	7.0	93.0	0.0	-0.09	0.36	0.79	0.82	2.55	7116	907	3	0	4	0	0	logfile
✘	8ZYD	60562	2025-03-12	2024-06-17	3.04	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7058	728	6	73	2	0	0	logfile
✔	9CAG	45390	2025-03-11	2024-06-17	3.33	2.37	3.31	2.2	0.004	0.63	0.0	0.05	15.05	0.00	2.063	9.61	0.15	4.7	95.2	0.1	0.57	0.77	0.79	3.15	2.2	0.002	0.53	0.0	0.04	17.55	0.00	2.083	6.38	1.80	3.8	96.1	0.1	0.65	0.36	0.79	0.82	2.68	6231	773	4	8	2	0	0	logfile
✔	9CAJ	45393	2025-03-11	2024-06-17	3.51	2.46	3.38	2.2	0.004	0.66	0.0	0.04	15.92	0.01	2.088	12.57	0.45	4.8	95.2	0.0	-0.25	0.77	0.76	2.72	2.2	0.004	0.66	0.0	0.04	17.50	0.00	2.075	7.98	2.69	5.2	94.7	0.1	-0.28	0.40	0.77	0.77	2.25	6245	773	4	9	1	0	0	logfile
✔	9CAL	45395	2025-03-11	2024-06-17	3.15	2.36	3.09	2.1	0.004	0.68	0.0	0.04	15.36	0.01	2.136	5.47	0.00	3.9	96.1	0.0	-0.07	0.77	0.80	2.39	2.1	0.003	0.55	0.0	0.04	17.55	0.00	2.243	5.63	1.80	4.2	95.8	0.0	0.64	0.31	0.80	0.83	2.27	6268	773	5	10	1	0	0	logfile
✘	8ZYC	60561	2025-03-12	2024-06-17	2.99	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7058	728	6	73	2	0	0	logfile

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