Table showing results for March 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9CHX	45604	2025-03-12	2024-07-02	3.5	3.91	3.86	3.9	0.004	0.66	0.0	0.04	14.88	0.00	2.146	9.43	0.00	4.9	95.1	0.0	-0.53	0.65	0.68	2.27	3.9	0.003	0.66	0.0	0.04	16.46	0.00	2.489	6.90	2.62	3.9	96.1	0.0	-0.16	0.43	0.65	0.72	1.09	7129	889	5	0	2	0	0	logfile
✔	9CHU	45602	2025-03-12	2024-07-02	3.49	3.92	3.50	3.9	0.006	0.86	3.0	0.06	14.03	0.00	2.165	7.85	0.41	6.6	93.4	0.0	-1.06	0.71	0.80	2.51	3.9	0.003	0.66	0.0	0.04	15.94	0.00	2.372	4.18	2.45	5.4	94.6	0.0	-0.03	0.46	0.70	0.83	1.49	7009	887	5	0	2	0	0	logfile
✔	9CHT	45601	2025-03-12	2024-07-02	3.54	3.73	3.57	3.6	0.003	0.66	0.0	0.04	14.85	0.01	2.203	16.59	0.32	9.9	90.0	0.1	-1.62	0.54	0.47	0.88	3.6	0.003	0.66	0.0	0.04	16.55	0.00	2.482	13.45	1.16	9.6	90.3	0.1	-1.41	0.98	0.55	0.50	0.81	8445	1034	3	0	0	0	0	logfile
✔	9CHV	45603	2025-03-11	2024-07-02	3.95	4.29	3.75	4.3	0.009	1.53	33.0	0.11	15.28	0.01	2.106	11.74	4.86	6.9	93.1	0.0	-1.78	0.65	0.66	0.86	4.3	0.003	0.70	0.0	0.04	16.73	0.00	2.407	7.18	3.03	3.7	96.3	0.0	-0.38	1.52	0.69	0.74	1.08	6644	873	4	0	1	0	0	logfile
✔	9iMA	60686	2025-03-12	2024-07-02	2.65	3.02	2.77	3.0	0.003	0.70	0.0	0.04	12.29	0.01	2.292	4.08	0.00	4.3	95.7	0.0	0.12	0.57	0.86	3.50	3.0	0.003	0.58	0.0	0.04	14.47	0.00	2.533	4.22	1.70	4.4	95.5	0.1	1.12	0.37	0.58	0.88	3.76	7472	933	6	0	6	0	0	logfile
✔	9CGZ	45589	2025-03-12	2024-07-01	2.69	2.42	2.57	2.8	0.011	1.91	0.0	0.09	12.93	0.01	2.545	0.00	0.26	6.8	92.0	1.2	-2.13	0.26	0.62	4.31	2.8	0.003	0.63	0.0	0.05	17.74	0.00	2.493	4.99	1.82	7.0	93.0	0.0	-2.43	0.97	0.39	0.79	5.10	6822	438	6	0	0	0	3480	logfile
✔	9CGX	45588	2025-03-12	2024-07-01	2.97	2.72	2.89	3.0	0.011	2.03	0.0	0.09	13.19	0.01	2.510	0.00	2.82	4.9	92.4	2.8	-2.56	0.26	0.63	4.86	3.1	0.003	0.63	0.0	0.05	16.42	0.00	2.530	3.74	1.28	7.9	91.9	0.2	-2.78	1.38	0.36	0.78	4.88	6960	444	6	0	0	0	3540	logfile
✔	9CHM	45590	2025-03-12	2024-07-01	3.47	4.54	3.49	4.2	0.004	0.82	0.0	0.04	16.49	0.00	2.176	16.62	0.35	5.8	94.2	0.0	-0.84	0.74	0.84	1.33	4.1	0.003	0.73	0.0	0.04	17.13	0.00	2.523	10.90	4.72	5.0	95.0	0.0	-0.74	1.77	0.73	0.84	1.33	7498	967	4	0	0	0	0	logfile
✔	9CG4	45568	2025-03-12	2024-06-28	3.37	4.27	3.50	3.9	0.003	0.61	0.0	0.04	19.71	0.00	2.236	9.08	0.35	4.6	95.4	0.0	-0.68	0.83	0.81	1.95	3.9	0.003	0.64	0.0	0.04	19.93	0.00	2.089	6.64	2.48	3.8	96.1	0.1	0.13	0.49	0.81	0.82	2.02	8375	966	6	43	0	0	0	logfile
✔	9iJY	60645	2025-03-11	2024-06-25	2.64	3.07	2.64	3.0	0.005	0.84	0.0	0.04	16.72	0.00	2.215	15.66	0.29	5.2	94.8	0.0	0.06	0.51	0.76	2.61	3.0	0.003	0.69	0.0	0.04	16.94	0.00	2.601	9.82	3.03	4.4	95.6	0.0	1.15	1.01	0.52	0.77	2.81	6654	784	4	0	4	0	0	logfile
✔	9iJZ	60646	2025-03-11	2024-06-25	2.91	3.32	2.89	3.2	0.006	0.79	0.0	0.04	16.40	0.00	2.034	14.61	0.29	5.7	94.3	0.0	0.55	0.53	0.77	2.36	3.2	0.003	0.60	0.0	0.04	16.36	0.00	2.592	9.29	2.59	4.4	95.6	0.0	1.33	0.35	0.49	0.74	2.68	6654	784	4	0	4	0	0	logfile
✘	9CDE	45469	2025-03-11	2024-06-24	3.44	3.63	3.44	3.7	0.009	1.15	0.0	0.08	25.59	0.01	2.031	23.67	1.46	7.1	92.9	0.0	1.12	0.56	0.72	2.12	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6822	720	6	0	24	36	0	logfile
✔	9CDA	45465	2025-03-14	2024-06-24	3.3	3.08	3.29	3.3	0.006	0.59	0.0	0.05	18.16	0.00	1.993	7.61	1.85	5.1	94.9	0.0	-2.65	0.60	0.87	4.03	3.3	0.008	0.72	0.0	0.05	18.56	0.00	2.524	5.54	2.88	8.2	91.8	0.0	-2.76	0.51	0.61	0.90	4.30	9855	1440	18	0	0	0	0	logfile
✔	9CDD	45468	2025-03-11	2024-06-24	3.05	3.24	3.04	3.4	0.009	1.21	0.0	0.08	25.46	0.01	0.629	22.39	1.95	3.4	96.6	0.0	-1.04	0.50	0.64	2.41	3.3	0.003	0.66	0.0	0.04	17.66	0.00	2.299	16.96	1.30	2.7	97.3	0.0	0.97	0.89	0.55	0.70	1.98	6867	720	6	0	24	81	0	logfile
✔	9iJE	60629	2025-03-13	2024-06-22	2.34	2.89	2.69	2.9	0.005	0.70	0.0	0.05	15.99	0.01	2.240	6.01	2.15	2.2	97.8	0.0	1.09	0.60	0.79	3.56	2.9	0.002	0.54	0.0	0.04	16.71	0.00	2.554	2.93	2.76	2.0	98.0	0.0	1.61	0.37	0.60	0.80	3.23	9340	1227	7	0	1	1	0	logfile
✔	9iJD	60628	2025-03-14	2024-06-22	2.76	3.23	2.98	3.2	0.006	0.78	1.0	0.05	16.98	0.01	2.181	14.24	1.73	3.1	96.8	0.2	0.20	0.55	0.73	2.81	3.2	0.003	0.59	0.0	0.04	17.68	0.00	2.474	6.47	3.67	2.8	97.2	0.0	0.65	1.14	0.57	0.75	2.29	9371	1227	7	0	1	0	0	logfile
✔	9iiY	60609	2025-03-06	2024-06-21	3.0	3.31	3.13	3.4	0.003	0.79	0.0	0.08	21.55	0.00	2.103	19.24	0.36	9.0	91.0	0.0	-3.11	0.48	0.46	0.64	3.4	0.005	0.99	0.0	0.08	21.87	0.01	2.336	23.25	4.98	14.5	85.5	0.0	-3.35	0.54	0.53	0.55	0.71	5943	620	3	43	0	0	0	logfile
✔	9iJ2	60613	2025-03-05	2024-06-21	3.9	4.21	4.00	4.2	0.005	1.13	0.0	0.06	22.17	0.01	2.273	9.61	0.32	9.8	90.2	0.0	-3.30	0.59	0.49	1.13	4.1	0.003	0.84	0.0	0.04	21.96	0.00	2.537	18.79	5.06	9.5	90.2	0.3	-2.30	1.26	0.61	0.51	0.31	3729	351	3	43	0	0	0	logfile
✔	9iJ5	60616	2025-03-12	2024-06-21	2.8	3.11	2.96	3.1	0.008	1.16	1.0	0.06	19.97	0.01	2.267	7.73	1.02	6.3	93.7	0.0	-2.72	0.65	0.69	1.49	3.1	0.004	1.07	1.0	0.05	19.92	0.00	2.335	18.05	3.95	6.3	93.7	0.0	-1.27	0.43	0.59	0.67	1.65	7139	755	4	51	1	0	0	logfile
✔	9iJ4	60615	2025-03-12	2024-06-21	2.7	3.01	2.82	3.0	0.006	0.91	0.0	0.05	19.91	0.01	1.731	8.91	0.88	6.5	93.3	0.1	-1.89	0.62	0.65	1.52	3.0	0.004	0.70	0.0	0.05	20.15	0.01	2.355	14.27	3.09	6.5	93.3	0.1	-1.09	0.38	0.59	0.69	2.02	7129	755	4	51	1	0	0	logfile

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