Table showing results for March 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9FAA	50270	2025-03-13	2024-05-10	3.6	3.34	3.58	3.9	0.010	1.10	0.0	0.05	11.73	0.01	2.275	10.96	0.00	1.7	98.3	0.0	-4.21	0.52	0.75	3.32	3.8	0.005	0.74	0.0	0.05	13.47	0.01	2.517	7.76	2.24	8.1	91.9	0.0	-4.09	1.11	0.52	0.76	3.06	8695	590	10	0	5	0	4235	logfile
✔	8ZGT	60090	2025-03-13	2024-05-09	2.96	3.17	2.99	3.2	0.004	0.79	0.0	0.05	18.71	0.01	2.251	2.24	4.14	4.9	95.0	0.1	-0.71	0.65	0.81	3.12	3.2	0.003	0.61	0.0	0.05	17.59	0.00	2.516	3.81	3.43	4.4	95.5	0.1	0.97	0.34	0.62	0.80	2.92	8915	1077	13	0	14	0	0	logfile
✔	8ZGS	60089	2025-03-13	2024-05-09	3.04	3.27	3.07	3.3	0.007	0.75	0.0	0.05	18.16	0.01	2.217	6.51	0.61	4.3	95.7	0.0	0.87	0.62	0.79	2.99	3.3	0.002	0.53	0.0	0.04	17.06	0.00	2.440	4.38	2.22	3.9	96.1	0.0	1.42	0.33	0.63	0.81	2.82	8915	1077	13	0	14	0	0	logfile
✔	9BPU	44790	2025-03-06	2024-05-08	3.26	3.28	3.26	3.4	0.006	0.78	0.0	0.05	17.75	0.00	2.216	8.90	0.64	5.0	95.0	0.0	-0.01	0.71	0.77	2.29	3.4	0.003	0.64	0.0	0.04	16.79	0.00	2.523	6.67	3.21	2.9	97.1	0.0	0.35	0.34	0.70	0.78	2.18	4318	529	5	0	5	0	0	logfile
✔	9BPV	44791	2025-03-06	2024-05-08	3.0	2.88	2.94	3.1	0.007	0.92	0.0	0.06	16.58	0.01	2.205	8.58	0.61	1.9	98.1	0.0	0.62	0.62	0.78	2.15	3.1	0.003	0.61	0.0	0.04	17.67	0.00	2.540	5.72	1.22	3.4	96.6	0.0	0.74	0.46	0.67	0.83	2.34	4417	542	4	0	2	0	0	logfile
✔	8ZFZ	60072	2025-03-13	2024-05-08	3.3	3.54	3.33	3.6	0.004	0.72	0.0	0.04	18.50	0.00	2.158	20.94	0.72	7.4	92.5	0.2	-1.00	0.51	0.63	0.59	3.6	0.003	0.70	0.0	0.04	18.52	0.00	2.436	12.81	5.54	7.0	92.8	0.2	-0.73	0.41	0.59	0.69	0.74	9065	1155	5	0	0	0	0	logfile
✔	8ZF4	60050	2025-03-05	2024-05-07	3.05	2.37	2.34	2.2	0.006	0.94	0.0	0.05	13.23	0.01	2.290	9.68	0.54	7.4	92.6	0.0	-0.59	0.79	0.77	4.07	2.9	0.004	0.72	0.0	0.04	15.66	0.01	2.467	6.95	1.63	6.7	93.3	0.0	1.06	1.00	0.80	0.79	3.66	2073	288	1	0	0	0	0	logfile
✘	8ZFE	60058	2025-03-05	2024-05-07	2.56	2.41	2.34	2.2	0.008	0.76	1.0	0.06	12.27	0.01	2.278	10.52	0.48	8.2	91.8	0.0	-2.16	0.80	0.80	3.83	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	2198	293	1	0	0	0	0	logfile
✔	8ZF9	60053	2025-03-13	2024-05-07	2.56	2.44	2.48	2.2	0.010	0.89	8.0	0.06	12.39	0.00	1.710	10.06	0.45	5.4	94.6	0.0	-0.94	0.83	0.83	4.29	2.2	0.003	0.63	0.0	0.04	14.73	0.00	2.456	5.31	2.57	3.0	97.0	0.0	0.22	1.38	0.85	0.85	3.63	9330	1273	6	0	0	0	0	logfile
✔	8ZFD	60057	2025-03-05	2024-05-07	2.56	2.01	2.33	2.6	0.007	0.98	2.0	0.06	13.01	0.01	2.217	9.64	0.46	9.9	90.1	0.0	-1.61	0.77	0.76	3.98	2.6	0.004	0.68	0.0	0.04	15.71	0.00	2.600	6.88	4.15	5.8	94.2	0.0	0.48	0.43	0.75	0.78	3.64	2231	294	1	0	0	0	0	logfile
✔	8ZFC	60056	2025-03-13	2024-05-07	2.68	2.47	2.60	2.2	0.006	0.74	2.0	0.05	12.45	0.00	2.051	7.63	0.12	5.6	94.4	0.0	-0.79	0.81	0.79	4.41	2.2	0.004	0.65	0.0	0.04	15.50	0.00	2.402	5.57	2.61	3.9	96.1	0.0	0.23	0.40	0.84	0.86	3.40	8545	1149	5	0	0	0	0	logfile
✔	8ZF7	60052	2025-03-05	2024-05-07	3.15	2.41	2.43	2.9	0.007	0.90	1.0	0.06	12.64	0.01	2.300	9.64	0.54	6.0	94.0	0.0	-0.35	0.72	0.77	2.96	2.9	0.004	0.74	0.0	0.04	14.80	0.01	2.598	5.44	0.00	4.9	95.1	0.0	1.64	0.46	0.73	0.79	1.99	2076	288	1	0	0	0	0	logfile
✔	8ZFA	60054	2025-03-12	2024-05-07	2.96	2.20	2.83	2.0	0.004	0.73	3.0	0.06	12.50	0.01	1.845	10.39	0.50	4.8	95.2	0.0	0.22	0.75	0.72	3.82	1.9	0.003	0.69	0.0	0.04	15.66	0.01	2.547	8.28	2.86	4.1	95.9	0.0	0.57	1.18	0.78	0.78	3.15	8313	1134	5	0	0	0	0	logfile
✔	8ZF6	60051	2025-03-12	2024-05-07	2.98	2.27	2.88	2.9	0.009	0.80	3.0	0.06	12.40	0.01	2.120	8.51	0.62	4.7	95.3	0.0	-0.35	0.81	0.78	3.84	2.9	0.005	0.67	0.0	0.04	15.50	0.00	2.432	6.51	2.12	3.6	96.4	0.0	0.46	1.60	0.84	0.83	3.78	8284	1129	5	0	0	0	0	logfile
✔	9Boi	44742	2025-03-05	2024-05-03	3.22	3.46	3.16	3.4	0.006	0.91	0.0	0.05	16.43	0.01	2.319	3.63	0.00	2.6	97.4	0.0	-1.38	0.55	0.79	3.30	3.5	0.003	0.61	0.0	0.04	16.69	0.00	2.505	3.48	1.17	2.9	97.1	0.0	3.13	0.82	0.58	0.81	2.13	3256	423	2	0	1	0	0	logfile
✔	8ZDR	60006	2025-03-12	2024-05-03	2.65	2.88	2.68	2.9	0.005	0.67	0.0	0.04	23.33	0.01	1.902	7.72	0.55	4.0	96.0	0.0	-0.52	0.66	0.75	3.99	2.9	0.004	0.61	0.0	0.04	22.96	0.00	2.120	10.51	3.01	4.0	96.0	0.0	0.09	0.90	0.65	0.75	3.08	7440	446	5	187	1	0	0	logfile
✔	9BoG	44735	2025-03-14	2024-05-03	3.99	2.85	3.92	3.9	0.002	0.54	0.0	0.04	14.61	0.00	2.218	6.86	0.29	3.2	96.8	0.0	0.13	0.76	0.72	2.01	3.2	0.006	0.79	0.0	0.05	15.58	0.00	2.386	11.25	7.14	6.7	93.3	0.0	-0.39	1.34	0.78	0.77	2.33	9370	1438	4	0	0	0	0	logfile
✔	9F6P	50237	2025-03-05	2024-05-02	3.7	3.92	3.71	4.0	0.004	0.93	0.0	0.05	18.01	0.01	2.090	19.52	2.05	2.7	97.3	0.0	1.39	0.48	0.70	1.10	4.0	0.004	0.84	0.0	0.04	17.89	0.00	2.158	14.61	7.44	3.8	96.2	0.0	1.17	0.78	0.53	0.74	0.63	3720	482	2	0	1	0	0	logfile
✔	9F6Q	50238	2025-03-05	2024-05-02	3.9	4.14	3.83	4.2	0.004	0.83	0.0	0.04	15.98	0.01	2.219	16.19	2.62	4.1	95.9	0.0	1.22	0.54	0.71	0.79	4.2	0.004	1.01	0.0	0.05	16.75	0.01	2.556	19.73	5.51	4.5	95.5	0.0	1.03	0.70	0.53	0.72	0.79	3618	469	1	0	0	0	0	logfile
✔	9F6o	50236	2025-03-06	2024-05-02	3.9	4.30	4.08	4.2	0.004	0.80	0.0	0.04	17.49	0.00	2.268	16.41	3.07	3.2	96.8	0.0	0.92	0.55	0.76	0.55	4.2	0.004	0.76	0.0	0.04	17.34	0.00	2.516	14.56	4.71	3.4	96.6	0.0	1.27	0.52	0.56	0.76	0.69	4571	591	2	0	0	0	0	logfile

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