Table showing results for March 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9F6N	50235	2025-03-05	2024-05-02	3.6	3.87	3.61	3.8	0.008	1.19	0.0	0.05	16.58	0.01	1.906	3.91	2.80	3.4	96.6	0.0	-0.74	0.53	0.77	1.34	3.8	0.003	0.75	0.0	0.04	16.83	0.00	2.258	10.93	6.62	4.3	95.7	0.0	2.21	1.37	0.58	0.81	1.17	3652	471	2	0	1	0	0	logfile
✔	9F6L	50228	2025-03-14	2024-05-01	3.9	4.20	3.90	4.1	0.003	0.67	0.0	0.04	16.41	0.01	2.141	1.48	0.00	1.9	98.1	0.0	-1.02	0.75	0.80	1.37	4.1	0.003	0.62	0.0	0.04	17.83	0.00	2.309	5.06	1.21	1.7	98.3	0.0	1.63	0.68	0.76	0.82	0.70	9639	1118	4	26	3	0	0	logfile
✔	9BLT	44676	2025-03-12	2024-05-01	3.38	3.70	3.50	3.8	0.003	0.51	0.0	0.04	18.59	0.00	2.218	8.29	2.72	4.8	95.2	0.0	0.49	0.71	0.79	1.81	3.8	0.003	0.53	0.0	0.04	18.66	0.00	2.458	7.31	3.50	4.3	95.7	0.0	0.74	0.81	0.70	0.79	1.70	7098	921	4	0	0	0	0	logfile
✔	9BLU	44677	2025-03-11	2024-05-01	3.38	3.73	3.50	3.8	0.003	0.45	0.0	0.04	18.95	0.00	2.214	6.89	3.18	2.9	97.1	0.0	1.22	0.68	0.79	1.04	3.8	0.002	0.48	0.0	0.04	19.22	0.00	2.470	5.58	3.47	3.3	96.7	0.0	1.60	0.20	0.68	0.79	1.00	6377	831	3	0	0	0	0	logfile
✔	9BLS	44675	2025-03-12	2024-05-01	2.96	3.23	3.00	3.3	0.003	0.51	0.0	0.04	19.38	0.00	2.224	8.42	3.62	5.9	94.1	0.0	0.28	0.67	0.80	2.45	3.3	0.004	0.57	0.0	0.04	19.47	0.00	2.521	7.30	3.62	5.8	94.2	0.0	0.49	0.21	0.67	0.80	2.18	7112	921	4	0	0	0	0	logfile
✔	8ZD1	39946	2025-03-12	2024-04-30	2.6	2.43	2.53	2.1	0.010	0.91	3.0	0.06	12.77	0.01	2.017	8.61	0.25	4.7	95.3	0.0	-0.34	0.85	0.84	4.66	2.2	0.003	0.59	0.0	0.04	15.16	0.00	2.456	4.96	2.73	3.4	96.6	0.0	0.64	1.38	0.85	0.86	3.70	8364	1140	5	0	0	0	0	logfile
✔	8ZCJ	39931	2025-03-12	2024-04-29	3.09	3.33	3.12	3.4	0.007	0.93	1.0	0.05	16.04	0.01	2.258	9.36	0.44	5.3	94.6	0.1	-1.54	0.62	0.69	1.51	3.3	0.003	0.67	0.0	0.04	16.39	0.00	2.281	8.61	4.85	4.4	95.6	0.0	-1.12	1.14	0.63	0.71	1.90	7808	1126	7	0	1	0	0	logfile
✔	9BKK	44643	2025-03-11	2024-04-29	2.51	2.85	2.68	2.9	0.012	1.75	2.0	0.10	12.29	0.01	2.388	6.33	2.54	4.5	94.6	0.9	-1.67	0.46	0.61	2.41	2.9	0.003	0.64	0.0	0.04	15.92	0.00	2.379	6.03	1.27	2.4	97.6	0.0	1.48	1.15	0.56	0.73	2.16	6809	890	6	0	1	0	0	logfile
✘	9BKJ	44642	2025-03-11	2024-04-29	2.59	2.90	2.70	2.9	0.005	0.75	0.0	0.05	12.93	0.00	2.260	9.17	0.71	2.0	97.8	0.2	1.02	0.61	0.68	3.31	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6795	891	6	0	1	0	0	logfile
✘	8ZC1	39919	2025-03-06	2024-04-28	4.17	4.43	4.20	4.3	0.003	0.75	0.0	0.05	13.38	0.01	2.313	5.92	0.00	4.3	95.7	0.0	-1.66	0.73	0.72	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4570	597	3	0	0	0	0	logfile
✔	8ZC5	39923	2025-03-11	2024-04-28	3.91	4.07	3.86	4.0	0.004	0.76	0.0	0.05	13.55	0.01	2.258	4.88	0.00	4.4	95.6	0.0	-1.55	0.74	0.78	2.73	4.0	0.004	0.68	0.0	0.05	15.01	0.00	2.540	8.66	2.14	5.2	94.8	0.0	-1.23	1.46	0.76	0.80	2.40	6515	830	8	0	2	0	0	logfile
✔	8ZBQ	39907	2025-03-11	2024-04-27	3.03	3.22	3.02	3.2	0.006	0.92	2.0	0.05	16.51	0.01	2.261	24.87	6.41	9.8	90.2	0.0	-2.05	0.66	0.78	2.44	3.2	0.004	0.65	0.0	0.04	17.05	0.00	2.468	12.59	4.81	7.4	92.6	0.0	-0.98	1.27	0.66	0.81	2.50	6346	779	2	0	0	0	0	logfile
✔	8ZB9	39898	2025-03-06	2024-04-26	3.31	3.44	3.33	3.5	0.007	0.87	0.0	0.05	16.83	0.01	2.267	16.36	0.37	14.2	85.8	0.0	-3.11	0.73	0.86	3.12	3.5	0.003	0.62	0.0	0.04	17.45	0.00	2.534	7.03	3.50	10.1	89.9	0.0	-2.04	0.41	0.72	0.84	3.09	4904	622	2	0	0	0	0	logfile
✔	9F43	50182	2025-03-13	2024-04-26	3.49	3.69	3.45	3.7	0.002	0.49	0.0	0.04	14.27	0.00	2.074	5.62	0.21	2.3	97.7	0.0	1.09	0.63	0.77	1.19	3.7	0.004	0.63	0.0	0.04	15.82	0.00	2.563	8.16	3.42	4.6	95.3	0.1	0.39	0.58	0.65	0.81	1.66	8465	1061	2	0	0	0	0	logfile
✔	9F42	50181	2025-03-13	2024-04-26	3.27	3.49	3.23	3.5	0.002	0.48	0.0	0.04	12.23	0.00	2.189	6.92	1.81	3.0	97.0	0.0	0.35	0.59	0.74	2.02	3.5	0.004	0.61	0.0	0.04	15.19	0.00	2.560	10.53	3.52	4.5	95.5	0.0	0.01	1.42	0.59	0.77	2.42	8465	1061	2	0	0	0	0	logfile
✔	8ZBE	39901	2025-03-12	2024-04-26	3.24	3.44	3.23	3.4	0.005	0.90	0.0	0.05	15.39	0.00	2.276	11.65	0.00	6.2	93.8	0.0	-2.05	0.60	0.66	0.71	3.4	0.004	0.66	0.0	0.04	16.09	0.00	2.510	8.90	5.65	5.9	94.1	0.0	-0.92	0.44	0.61	0.68	0.77	7489	1113	7	0	1	0	0	logfile
✔	8ZAN	39881	2025-03-05	2024-04-25	2.4	2.80	2.50	2.7	0.003	0.65	0.0	0.04	17.05	0.01	2.309	9.70	2.96	5.3	93.4	1.2	1.81	0.65	0.89	4.62	2.7	0.003	0.62	0.0	0.04	16.88	0.01	2.320	8.17	2.46	7.0	92.6	0.4	2.19	0.53	0.50	0.83	4.01	3938	492	4	0	2	0	0	logfile
✔	9F3F	50173	2025-03-12	2024-04-25	2.4	2.90	2.38	2.7	0.008	1.18	1.0	0.07	16.34	0.01	2.180	16.32	2.45	4.3	95.7	0.0	-0.13	0.84	0.84	3.55	2.6	0.003	0.62	0.0	0.04	17.83	0.00	2.542	8.09	2.82	3.8	96.2	0.0	1.49	0.58	0.83	0.86	3.02	7496	939	4	1	0	0	0	logfile
✔	8ZAM	39880	2025-03-05	2024-04-25	2.5	2.87	2.53	2.8	0.007	0.87	0.0	0.04	22.82	0.01	2.265	9.50	2.46	5.3	94.7	0.0	1.70	0.60	0.88	2.77	2.8	0.002	0.55	0.0	0.04	18.43	0.00	2.577	8.75	2.22	4.5	95.5	0.0	2.10	0.43	0.53	0.85	3.01	4000	492	4	0	2	0	0	logfile
✔	8ZAP	39883	2025-03-11	2024-04-25	2.6	2.77	2.58	2.8	0.003	0.60	0.0	0.04	16.03	0.01	1.487	8.32	4.19	2.6	97.4	0.0	1.24	0.71	0.89	4.03	2.8	0.003	0.52	0.0	0.04	15.61	0.00	2.613	4.91	2.69	1.3	98.7	0.0	2.56	0.47	0.69	0.89	3.52	6442	776	9	0	27	36	0	logfile

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