Table showing results for March 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8ZAN	39881	2025-03-05	2024-04-25	2.4	2.80	2.50	2.7	0.003	0.65	0.0	0.04	17.05	0.01	2.309	9.70	2.96	5.3	93.4	1.2	1.81	0.65	0.89	4.62	2.7	0.003	0.62	0.0	0.04	16.88	0.01	2.320	8.17	2.46	7.0	92.6	0.4	2.19	0.53	0.50	0.83	4.01	3938	492	4	0	2	0	0	logfile
✔	8ZAP	39883	2025-03-11	2024-04-25	2.6	2.77	2.58	2.8	0.003	0.60	0.0	0.04	16.03	0.01	1.487	8.32	4.19	2.6	97.4	0.0	1.24	0.71	0.89	4.03	2.8	0.003	0.52	0.0	0.04	15.61	0.00	2.613	4.91	2.69	1.3	98.7	0.0	2.56	0.47	0.69	0.89	3.52	6442	776	9	0	27	36	0	logfile
✔	9BiU	44602	2025-03-14	2024-04-24	2.9	3.33	2.90	3.2	0.003	0.56	0.0	0.04	17.10	0.00	2.204	4.85	2.00	7.0	93.0	0.0	0.77	0.63	0.84	2.63	3.2	0.004	0.61	0.0	0.04	17.22	0.00	2.216	5.49	2.20	6.8	93.2	0.0	0.77	0.38	0.62	0.85	2.43	9458	595	3	0	1	0	4738	logfile
✔	9BiT	44601	2025-03-14	2024-04-24	3.1	3.27	3.05	3.2	0.003	0.60	0.0	0.04	18.48	0.01	2.073	6.13	1.60	6.8	93.2	0.0	-0.05	0.60	0.83	2.75	3.2	0.003	0.55	0.0	0.04	18.29	0.00	2.266	4.75	2.60	6.1	93.9	0.0	0.60	0.81	0.62	0.84	2.54	9448	595	3	0	1	0	4734	logfile
✔	9BiS	44600	2025-03-14	2024-04-24	3.2	3.55	3.15	3.4	0.004	0.78	0.0	0.04	18.67	0.00	1.376	7.08	0.40	8.7	91.3	0.0	0.07	0.59	0.82	2.90	3.4	0.003	0.57	0.0	0.04	18.32	0.00	2.302	4.65	1.80	7.3	92.7	0.0	0.82	0.79	0.61	0.84	3.01	9444	595	3	0	1	0	4734	logfile
✔	9Bi9	44577	2025-03-12	2024-04-23	2.61	3.67	2.64	3.4	0.003	0.53	0.0	0.04	12.52	0.00	2.243	5.09	0.00	4.4	95.6	0.0	0.82	0.72	0.75	3.46	3.4	0.003	0.59	0.0	0.04	14.99	0.01	2.390	4.31	0.72	3.0	97.0	0.0	0.65	2.18	0.74	0.79	2.31	7578	497	2	0	1	0	3712	logfile
✔	9BiM	44593	2025-03-05	2024-04-23	3.67	3.99	3.64	4.0	0.004	0.75	0.0	0.04	13.02	0.01	2.259	4.86	0.00	2.9	97.1	0.0	0.00	0.55	0.80	1.98	4.0	0.003	0.56	0.0	0.04	13.67	0.00	2.636	6.35	1.21	2.7	97.3	0.0	1.93	0.33	0.60	0.82	1.58	3992	516	2	0	1	0	0	logfile
✔	9BHW	44555	2025-03-13	2024-04-22	2.72	3.56	2.84	3.3	0.005	0.72	0.0	0.05	14.14	0.00	2.158	6.79	0.31	2.0	98.0	0.0	0.77	0.85	0.86	4.93	3.3	0.004	0.61	0.0	0.04	15.92	0.00	2.467	4.90	1.33	2.5	97.5	0.0	1.96	0.66	0.78	0.84	3.93	8759	1071	8	4	0	0	0	logfile
✔	9BHX	44556	2025-03-13	2024-04-22	3.94	4.14	3.92	4.1	0.013	1.34	0.0	0.05	17.52	0.01	1.661	20.33	0.44	6.7	92.8	0.5	-1.38	0.72	0.75	1.79	4.1	0.005	0.80	0.0	0.05	18.17	0.01	2.479	13.49	4.87	8.5	91.3	0.2	-1.52	0.55	0.73	0.77	1.90	8376	1048	1	0	0	0	0	logfile
✔	8Z7W	39830	2025-03-05	2024-04-21	3.09	3.32	3.05	3.3	0.007	1.03	3.0	0.07	17.01	0.02	2.241	20.67	3.30	3.7	96.3	0.0	-0.06	0.59	0.82	1.84	3.3	0.003	0.62	0.0	0.04	17.18	0.00	2.596	8.65	4.20	2.9	97.1	0.0	1.76	1.10	0.58	0.82	2.33	3107	387	2	0	1	0	0	logfile
✔	8Z86	39839	2025-03-05	2024-04-21	3.87	4.10	3.72	4.1	0.005	1.06	1.0	0.06	17.27	0.01	2.294	5.87	0.58	7.3	92.4	0.2	-2.85	0.58	0.78	1.52	4.1	0.004	0.75	0.0	0.04	17.32	0.00	2.455	10.62	6.38	7.1	92.9	0.0	-2.38	0.32	0.59	0.80	1.13	3219	415	3	0	0	0	0	logfile
✔	8Z7R	39825	2025-03-05	2024-04-21	3.15	3.31	3.09	3.4	0.005	0.77	0.0	0.04	16.63	0.01	2.214	9.16	0.60	3.9	96.1	0.0	-0.35	0.53	0.79	2.54	3.4	0.004	0.67	0.0	0.04	16.76	0.00	2.589	10.28	4.50	3.1	96.9	0.0	1.52	1.09	0.57	0.82	1.91	3098	387	1	0	0	0	0	logfile
✔	8Z7X	39831	2025-03-05	2024-04-21	3.36	3.51	3.33	3.5	0.006	0.80	0.0	0.05	13.91	0.00	2.198	8.66	0.00	4.0	96.0	0.0	-0.59	0.52	0.70	1.15	3.5	0.003	0.61	0.0	0.04	15.69	0.00	2.564	9.00	2.61	4.6	95.4	0.0	0.73	0.99	0.51	0.72	0.43	2955	376	2	0	1	0	0	logfile
✔	8Z7S	39826	2025-03-05	2024-04-21	3.05	3.26	2.92	3.3	0.004	0.56	0.0	0.04	16.81	0.01	2.234	8.47	0.30	2.9	97.1	0.0	0.35	0.59	0.83	1.68	3.3	0.004	0.61	0.0	0.04	16.98	0.00	2.585	8.47	3.60	2.3	97.7	0.0	2.50	1.09	0.58	0.83	2.01	3116	387	2	0	1	0	0	logfile
✔	8Z80	39834	2025-03-05	2024-04-21	3.7	3.78	3.70	3.7	0.004	0.74	0.0	0.04	13.05	0.01	2.251	10.35	0.00	5.5	94.5	0.0	0.64	0.35	0.55	0.99	3.7	0.003	0.68	0.0	0.04	15.97	0.00	2.612	10.90	2.67	3.4	96.6	0.0	0.71	1.07	0.35	0.57	0.99	2828	389	2	0	1	0	0	logfile
✘	8Z7U	39828	2025-03-05	2024-04-21	3.1	3.31	3.03	3.3	0.014	0.90	1.0	0.05	19.01	0.01	2.218	15.72	0.90	3.1	96.9	0.0	-0.32	0.58	0.82	2.48	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3135	387	2	0	1	0	0	logfile
✔	8Z7T	39827	2025-03-05	2024-04-21	3.39	3.55	3.20	3.6	0.003	0.62	0.0	0.04	16.89	0.01	2.208	10.57	0.60	3.4	96.6	0.0	0.43	0.56	0.82	1.51	3.6	0.003	0.65	0.0	0.04	16.98	0.00	2.577	8.81	2.40	1.6	98.4	0.0	2.05	0.41	0.53	0.80	1.52	3110	387	2	0	1	0	0	logfile
✔	8Z7Y	39832	2025-03-05	2024-04-21	3.02	3.16	2.95	3.2	0.013	0.80	0.0	0.04	16.15	0.00	2.215	10.80	0.00	2.6	97.4	0.0	1.07	0.48	0.67	1.67	3.2	0.003	0.56	0.0	0.04	16.86	0.00	2.444	8.38	2.14	2.4	97.6	0.0	1.72	0.98	0.47	0.69	1.58	3083	382	2	0	1	0	0	logfile
✔	9BHM	44550	2025-03-14	2024-04-21	2.9	3.15	2.84	3.1	0.008	0.65	0.0	0.04	14.74	0.00	2.165	10.17	0.13	2.9	97.1	0.0	-0.56	0.50	0.68	1.61	3.1	0.004	0.69	0.0	0.04	16.34	0.00	2.464	11.65	3.62	3.0	97.0	0.0	-0.36	0.56	0.57	0.74	1.41	7150	890	5	0	1	0	0	logfile
✔	8Z7Z	39833	2025-03-05	2024-04-21	3.23	3.39	3.23	3.4	0.005	0.71	0.0	0.04	13.23	0.00	2.169	7.79	0.00	3.1	96.9	0.0	0.75	0.46	0.63	1.41	3.4	0.003	0.64	0.0	0.04	15.54	0.01	2.562	11.96	2.67	3.4	96.6	0.0	1.62	1.11	0.47	0.67	0.27	2834	389	2	0	1	0	0	logfile

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