Table showing results for March 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8YW4	39622	2025-03-13	2024-03-29	3.26	3.55	3.31	3.5	0.004	0.56	0.0	0.04	18.35	0.00	2.190	7.94	0.33	5.2	94.6	0.2	-0.25	0.56	0.66	0.32	3.5	0.003	0.62	0.0	0.04	18.51	0.00	2.519	6.71	4.23	5.1	94.7	0.2	0.84	1.19	0.63	0.82	1.50	8619	1082	6	0	0	0	0	logfile
✔	9EUQ	19980	2025-03-11	2024-03-28	2.98	3.52	3.13	3.4	0.003	0.58	0.0	0.04	18.09	0.00	2.026	14.76	0.56	4.2	95.8	0.0	0.62	0.63	0.83	2.08	3.4	0.004	0.67	0.0	0.04	18.41	0.00	1.920	12.55	4.47	4.2	95.7	0.1	0.58	0.75	0.63	0.84	2.21	6693	880	2	0	2	0	0	logfile
✔	9EUY	19989	2025-03-12	2024-03-28	2.95	3.23	3.00	3.3	0.003	0.74	0.0	0.05	11.99	0.01	2.311	3.09	0.24	1.8	98.2	0.0	0.41	0.69	0.83	3.53	3.2	0.003	0.60	0.0	0.04	16.02	0.00	2.600	6.18	1.91	1.4	98.6	0.0	1.75	0.63	0.68	0.83	2.70	7846	984	4	0	2	0	0	logfile
✔	9EVC	19998	2025-03-11	2024-03-28	3.73	3.99	3.80	3.9	0.004	0.80	0.0	0.05	16.47	0.01	2.095	16.28	0.43	6.7	93.3	0.0	-1.61	0.62	0.71	0.24	3.9	0.003	0.77	0.0	0.04	17.53	0.00	2.258	17.49	5.47	6.8	93.2	0.0	-0.53	0.67	0.63	0.74	0.71	6507	857	2	0	1	0	0	logfile
✔	9B7Y	44328	2025-03-12	2024-03-28	2.51	3.13	2.67	3.0	0.004	0.58	0.0	0.04	24.66	0.00	2.333	7.45	0.00	1.2	98.8	0.0	3.53	0.79	0.84	3.28	3.0	0.004	0.51	0.0	0.03	24.79	0.00	2.507	6.62	1.34	1.2	98.8	0.0	3.65	0.98	0.79	0.84	3.44	8361	770	6	120	0	0	0	logfile
✔	8YUU	39583	2025-03-13	2024-03-27	2.7	2.89	2.72	2.9	0.005	0.83	0.0	0.06	10.47	0.00	2.076	10.31	0.00	3.5	96.5	0.0	1.48	0.68	0.83	4.11	2.9	0.003	0.55	0.0	0.04	14.26	0.00	2.578	4.18	1.74	2.4	97.6	0.0	1.90	0.54	0.64	0.82	3.34	9037	1145	6	0	2	0	0	logfile
✔	9B79	44304	2025-03-12	2024-03-27	2.71	2.95	2.77	3.0	0.003	0.60	0.0	0.05	12.08	0.00	2.229	6.42	0.00	2.4	97.6	0.0	0.94	0.58	0.72	2.58	3.0	0.006	0.74	0.0	0.05	15.41	0.00	2.452	7.87	3.30	2.5	97.5	0.0	0.85	1.76	0.63	0.79	2.15	7876	1044	4	0	0	0	0	logfile
✔	9B73	44299	2025-03-12	2024-03-27	1.96	2.85	2.08	2.6	0.004	0.50	0.0	0.05	14.71	0.01	1.936	6.02	0.36	0.0	100.0	0.0	0.18	0.76	0.90	5.56	2.6	0.003	0.52	0.0	0.04	13.78	0.00	1.997	4.56	0.59	0.7	99.3	0.0	0.84	1.23	0.76	0.90	4.35	8016	978	9	0	15	66	0	logfile
✔	8YUT	39582	2025-03-12	2024-03-27	2.7	2.92	2.83	2.9	0.008	0.81	0.0	0.06	10.59	0.00	2.231	4.63	0.00	1.9	98.1	0.0	1.32	0.63	0.77	3.26	2.9	0.003	0.62	0.0	0.04	14.63	0.00	2.422	3.59	2.47	1.8	98.2	0.0	1.67	0.62	0.61	0.79	2.96	8229	1041	6	0	2	0	0	logfile
✔	9ETM	19944	2025-03-12	2024-03-26	3.35	3.68	3.41	3.7	0.003	0.64	0.0	0.04	17.42	0.01	2.377	2.14	0.00	2.8	97.2	0.0	-0.09	0.58	0.75	2.42	3.7	0.004	0.78	0.0	0.05	17.32	0.00	2.434	9.31	2.84	2.6	97.4	0.0	1.31	1.34	0.57	0.75	2.37	7404	928	15	0	5	0	0	logfile
✔	9ERM	19926	2025-03-05	2024-03-24	2.3	2.49	2.28	2.5	0.009	1.43	0.0	0.09	11.15	0.01	2.641	0.85	3.03	4.1	95.9	0.0	-2.04	0.45	0.94	7.10	2.5	0.003	0.65	0.0	0.05	16.49	0.00	2.639	2.56	1.21	2.5	97.5	0.0	-1.23	1.02	0.43	0.93	6.46	2870	375	5	0	0	0	0	logfile
✔	9ERN	19927	2025-03-05	2024-03-24	2.5	2.72	2.65	2.6	0.009	1.38	0.0	0.08	11.58	0.01	2.539	0.00	3.03	2.7	97.3	0.0	-2.81	0.43	0.92	6.38	2.7	0.003	0.61	0.0	0.05	15.88	0.00	2.599	2.13	1.26	1.1	98.9	0.0	-1.56	0.98	0.43	0.91	5.95	3444	450	6	0	0	0	0	logfile
✔	9B5G	44211	2025-03-14	2024-03-22	2.67	3.11	2.69	3.0	0.003	0.47	0.0	0.04	10.03	0.00	2.032	1.42	0.94	2.0	98.0	0.0	1.47	0.69	0.80	4.23	3.0	0.003	0.51	0.0	0.04	13.54	0.00	2.010	3.21	2.07	1.7	98.3	0.0	1.45	2.40	0.77	0.87	3.53	9536	1209	6	0	4	0	0	logfile
✔	9B59	44204	2025-03-06	2024-03-22	3.49	3.95	3.46	3.8	0.003	0.43	0.0	0.04	9.73	0.00	1.779	1.86	0.74	3.4	96.6	0.0	1.74	0.82	0.79	1.99	3.8	0.003	0.56	0.0	0.04	13.22	0.00	2.453	5.37	1.66	3.0	97.0	0.0	1.39	0.61	0.83	0.83	1.76	4871	599	4	0	1	0	0	logfile
✔	9ERD	19912	2025-03-11	2024-03-22	3.72	3.87	3.65	3.9	0.005	0.71	0.0	0.04	15.66	0.00	1.752	8.87	0.28	7.0	93.0	0.0	-1.42	0.70	0.73	1.83	3.8	0.003	0.69	0.0	0.04	16.55	0.00	1.909	7.36	3.03	4.2	95.8	0.0	0.07	0.46	0.70	0.72	1.27	6569	813	2	0	4	0	0	logfile
✔	9B5M	44217	2025-03-13	2024-03-22	2.79	3.25	2.82	3.1	0.002	0.45	0.0	0.04	9.70	0.00	2.034	1.18	0.91	2.0	98.0	0.0	1.13	0.67	0.75	3.99	3.1	0.003	0.52	0.0	0.04	13.35	0.00	2.000	2.70	1.21	1.9	98.1	0.0	1.06	1.55	0.69	0.77	3.84	8935	1133	5	0	4	0	0	logfile
✔	9B57	44202	2025-03-06	2024-03-22	3.37	3.88	3.35	3.7	0.003	0.47	0.0	0.04	10.22	0.00	1.831	2.48	1.29	4.4	95.6	0.0	1.13	0.81	0.80	2.15	3.7	0.002	0.56	0.0	0.04	13.60	0.00	2.605	6.92	1.84	4.0	96.0	0.0	1.26	0.53	0.81	0.82	1.51	4871	599	4	0	1	0	0	logfile
✔	9B5i	44213	2025-03-14	2024-03-22	2.7	3.19	2.75	3.0	0.003	0.49	0.0	0.04	9.58	0.00	1.989	1.16	0.85	1.8	98.2	0.0	1.34	0.68	0.77	4.07	3.0	0.003	0.49	0.0	0.04	13.13	0.00	2.005	3.00	1.60	1.4	98.6	0.0	1.40	1.10	0.68	0.78	3.50	9536	1209	7	0	5	0	0	logfile
✔	9B5C	44207	2025-03-14	2024-03-22	2.5	3.00	2.51	2.8	0.003	0.48	0.0	0.04	10.21	0.00	2.036	1.37	0.66	1.7	98.3	0.0	1.33	0.70	0.80	4.37	2.8	0.003	0.49	0.0	0.04	13.52	0.00	2.017	2.74	1.60	1.2	98.8	0.0	1.57	0.26	0.72	0.82	3.75	9536	1209	6	0	4	0	0	logfile
✔	9B55	44200	2025-03-06	2024-03-22	3.23	3.71	3.22	3.6	0.004	0.50	0.0	0.04	9.79	0.00	1.834	2.89	0.18	4.6	95.4	0.0	0.82	0.79	0.84	2.87	3.6	0.003	0.52	0.0	0.04	12.67	0.00	2.585	3.82	0.55	3.5	96.5	0.0	1.21	1.12	0.74	0.81	2.60	4871	599	4	0	1	0	0	logfile

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