Table showing results for March 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9BA5	44396	2025-03-13	2024-04-03	3.51	2.38	3.57	3.6	0.011	1.26	2.0	0.07	12.94	0.01	2.389	2.35	0.00	5.3	94.7	0.0	-1.42	0.61	0.60	1.98	3.6	0.004	0.62	0.0	0.04	14.54	0.00	2.587	7.79	1.87	2.5	97.5	0.0	-0.18	1.15	0.66	0.63	1.66	9012	1146	4	0	10	0	0	logfile
✔	9B9Y	44392	2025-03-06	2024-04-03	3.5	3.81	3.46	3.6	0.006	1.16	0.0	0.05	14.20	0.01	2.288	4.18	0.20	3.0	97.0	0.0	0.65	0.74	0.84	1.97	3.6	0.003	0.68	0.0	0.04	15.99	0.00	2.465	5.95	4.13	1.7	98.3	0.0	1.81	1.57	0.74	0.85	1.90	4753	601	3	0	1	0	0	logfile
✔	9BAA	44402	2025-03-12	2024-04-03	3.39	3.77	3.54	3.7	0.004	0.63	0.0	0.04	14.98	0.00	2.231	9.22	0.12	8.1	91.7	0.2	1.06	0.63	0.81	1.62	3.7	0.003	0.61	0.0	0.04	16.59	0.00	2.437	8.78	2.36	7.8	92.0	0.2	1.80	0.34	0.61	0.81	1.29	7771	994	2	0	0	0	0	logfile
✔	9B9R	44389	2025-03-12	2024-04-03	3.7	4.67	3.12	4.1	0.002	0.68	0.0	0.04	11.04	0.00	2.150	2.60	0.00	0.9	99.1	0.0	0.53	0.69	0.69	0.82	4.2	0.004	1.24	0.0	0.04	15.75	0.00	2.243	11.98	2.34	1.2	98.8	0.0	1.58	1.39	0.71	0.75	1.70	6928	444	4	0	0	0	3436	logfile
✔	8YY1	39663	2025-03-13	2024-04-03	3.6	3.97	3.60	3.4	0.003	0.56	0.0	0.04	4.69	0.01	2.275	4.11	0.00	5.8	94.2	0.0	2.17	0.63	0.39	—	2.5	0.003	0.63	0.0	0.04	4.48	0.01	2.586	1.98	0.00	6.2	93.8	0.0	2.33	1.74	0.67	0.72	—	9097	1845	14	0	0	0	0	logfile
✔	8YWX	39646	2025-03-06	2024-04-01	3.4	3.68	3.37	3.6	0.009	2.56	46.0	0.13	13.58	0.01	1.898	22.95	2.43	3.4	96.6	0.0	-1.55	0.67	0.73	2.13	3.6	0.003	0.78	0.0	0.05	14.93	0.00	2.289	8.25	2.81	5.8	94.2	0.0	-1.31	2.30	0.68	0.75	1.18	4803	623	3	0	0	0	0	logfile
✔	9B8X	44361	2025-03-12	2024-04-01	3.0	3.73	2.92	3.4	0.002	0.42	0.0	0.03	9.22	0.00	2.325	4.87	0.40	2.8	97.2	0.0	2.41	0.60	0.86	2.62	3.4	0.002	0.51	0.0	0.04	12.25	0.00	2.390	3.94	1.35	2.9	97.1	0.0	2.44	0.51	0.61	0.87	2.66	7564	993	2	0	2	0	0	logfile
✔	9B8Z	44363	2025-03-12	2024-04-01	3.4	4.06	3.35	3.8	0.004	0.48	0.0	0.03	10.45	0.00	2.014	3.84	0.54	4.2	95.8	0.0	2.44	0.70	0.85	2.22	3.8	0.003	0.57	0.0	0.04	14.29	0.00	2.366	5.39	2.70	2.2	97.8	0.0	2.15	0.54	0.69	0.87	2.03	7509	978	2	0	3	0	0	logfile
✔	9B91	44365	2025-03-12	2024-04-01	3.3	4.21	3.19	3.7	0.005	0.50	0.0	0.04	11.38	0.00	2.119	6.47	0.28	3.9	96.1	0.0	1.45	0.60	0.83	2.44	3.8	0.003	0.97	1.0	0.04	13.65	0.00	2.362	7.15	2.07	2.7	97.3	0.0	2.14	0.60	0.60	0.86	2.32	7511	993	2	0	3	0	0	logfile
✔	8YWG	39632	2025-03-12	2024-03-31	3.28	2.63	3.23	2.3	0.003	0.66	0.0	0.04	14.30	0.00	2.255	5.39	0.24	4.7	95.2	0.1	0.59	0.76	0.77	2.62	2.3	0.003	0.63	0.0	0.04	16.85	0.00	2.451	6.96	2.89	4.8	95.2	0.0	0.80	0.85	0.76	0.80	2.34	7707	963	1	0	0	0	0	logfile
✔	8YWi	39634	2025-03-13	2024-03-31	2.7	2.38	3.00	2.1	0.003	0.65	0.0	0.04	16.77	0.01	2.209	4.99	0.11	4.8	94.4	0.8	0.94	0.80	0.80	3.23	2.1	0.003	0.61	0.0	0.04	18.53	0.00	2.014	4.58	1.59	5.1	94.3	0.6	0.97	0.78	0.83	0.83	2.59	8710	980	5	34	2	0	0	logfile
✔	9B8R	44356	2025-03-14	2024-03-31	3.5	3.75	3.62	3.7	0.015	1.75	3.0	0.11	15.44	0.02	2.205	9.34	2.06	4.3	94.6	1.1	-1.71	0.62	0.56	1.83	3.7	0.003	0.70	0.0	0.04	17.48	0.00	2.472	9.94	2.16	2.4	97.6	0.0	0.96	1.35	0.70	0.77	1.77	9425	1119	4	22	1	0	0	logfile
✔	8YWM	39638	2025-03-13	2024-03-31	3.2	2.59	3.23	2.3	0.004	0.71	0.0	0.05	17.37	0.01	2.216	6.11	0.23	3.7	96.2	0.1	0.21	0.73	0.71	2.17	2.4	0.003	0.66	0.0	0.04	19.94	0.00	2.367	9.70	2.05	3.3	96.6	0.1	1.17	0.79	0.74	0.77	1.82	8693	979	3	35	0	0	0	logfile
✔	9B8J	44347	2025-03-12	2024-03-30	3.4	2.22	3.37	2.1	0.003	0.47	0.0	0.04	11.29	0.00	2.233	4.79	0.84	4.1	95.9	0.0	-0.62	0.71	0.76	3.47	2.1	0.003	0.56	0.0	0.04	14.55	0.00	2.498	5.53	2.28	4.5	95.5	0.0	-0.61	0.29	0.73	0.77	2.63	7610	961	10	0	7	0	0	logfile
✔	9B8i	44346	2025-03-06	2024-03-30	3.18	3.67	3.32	3.6	0.004	0.59	0.0	0.05	15.42	0.01	2.302	4.20	0.96	3.0	97.0	0.0	0.37	0.48	0.82	2.20	3.6	0.003	0.60	0.0	0.04	16.16	0.00	2.393	5.72	2.72	3.2	96.8	0.0	0.65	0.31	0.48	0.83	1.94	5610	719	1	0	0	0	0	logfile
✔	9B8H	44345	2025-03-06	2024-03-30	3.8	4.01	3.65	3.9	0.007	0.68	0.0	0.05	14.22	0.01	2.324	5.33	0.42	4.6	95.4	0.0	0.71	0.69	0.80	1.07	3.9	0.004	0.62	0.0	0.04	14.95	0.00	2.518	8.10	2.73	5.8	94.2	0.0	0.58	0.45	0.71	0.83	2.10	4630	587	2	0	4	0	0	logfile
✔	8YW4	39622	2025-03-13	2024-03-29	3.26	3.55	3.31	3.5	0.004	0.56	0.0	0.04	18.35	0.00	2.190	7.94	0.33	5.2	94.6	0.2	-0.25	0.56	0.66	0.32	3.5	0.003	0.62	0.0	0.04	18.51	0.00	2.519	6.71	4.23	5.1	94.7	0.2	0.84	1.19	0.63	0.82	1.50	8619	1082	6	0	0	0	0	logfile
✔	8YW5	39623	2025-03-13	2024-03-29	2.84	3.09	2.86	3.1	0.003	0.50	0.0	0.04	11.96	0.00	2.064	4.62	3.79	4.6	95.4	0.0	-0.41	0.61	0.80	3.98	3.1	0.004	0.60	0.0	0.04	15.00	0.00	2.520	4.27	2.93	4.7	95.3	0.0	1.26	0.33	0.61	0.81	3.35	8937	1157	6	0	0	0	0	logfile
✔	8YW3	39621	2025-03-13	2024-03-29	2.68	3.44	2.76	3.3	0.004	0.66	0.0	0.04	17.97	0.00	2.163	11.08	7.83	3.2	96.8	0.0	0.63	0.66	0.77	2.00	3.3	0.004	0.64	0.0	0.04	17.74	0.00	2.506	7.79	3.56	3.7	96.3	0.0	0.63	0.27	0.66	0.77	2.35	9231	1160	6	0	0	0	0	logfile
✔	9B8A	44336	2025-03-06	2024-03-29	3.4	3.63	3.33	3.5	0.004	0.64	0.0	0.04	13.81	0.00	2.205	3.10	1.11	1.6	98.4	0.0	1.09	0.70	0.83	2.64	3.6	0.004	0.59	0.0	0.04	15.33	0.00	2.534	4.17	2.90	3.1	96.9	0.0	1.04	1.15	0.70	0.84	2.70	4320	554	1	0	0	0	0	logfile

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