Table showing results for March 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9BD8	44446	2025-03-06	2024-04-11	4.8	6.12	4.01	5.1	0.003	0.63	0.0	0.04	13.22	0.00	2.141	25.69	0.00	7.9	92.1	0.0	-2.18	0.86	0.81	—	5.1	0.003	0.66	0.0	0.04	13.27	0.00	2.535	20.86	0.00	8.9	91.1	0.0	-2.58	0.32	0.86	0.82	—	5369	726	3	0	1	0	0	logfile
✔	8Z0T	39033	2025-03-11	2024-04-10	3.58	3.81	3.60	3.8	0.005	0.98	1.0	0.06	19.03	0.01	2.259	6.37	0.98	6.4	93.6	0.0	-1.26	0.72	0.79	1.79	3.7	0.004	0.67	0.0	0.05	16.75	0.00	2.427	10.17	5.31	7.9	92.1	0.0	-0.54	0.34	0.73	0.80	1.97	6556	802	9	0	17	0	0	logfile
✔	8Z0P	39710	2025-03-13	2024-04-10	3.1	3.23	3.20	3.3	0.003	0.68	0.0	0.04	15.66	0.00	1.926	7.25	1.17	7.5	91.8	0.7	-1.15	0.58	0.73	2.06	3.2	0.004	0.65	0.0	0.04	16.42	0.00	1.913	5.30	1.95	9.1	90.0	0.9	-1.60	1.05	0.60	0.76	1.81	9246	586	2	0	3	0	4627	logfile
✔	9BCS	44436	2025-03-11	2024-04-09	4.4	4.63	4.43	4.5	0.002	0.57	0.0	0.04	12.17	0.00	2.221	2.87	0.57	5.3	94.7	0.0	-0.54	0.60	0.78	—	4.5	0.003	0.67	0.0	0.04	10.79	0.00	2.245	2.56	0.00	9.6	90.4	0.0	0.31	0.53	0.63	0.81	—	5916	1038	4	0	2	0	0	logfile
✔	9BCV	44440	2025-03-12	2024-04-09	3.2	3.43	3.24	3.4	0.003	0.86	0.0	0.04	15.57	0.00	1.994	2.45	0.64	1.9	98.1	0.0	-0.32	0.64	0.79	2.82	3.4	0.003	0.63	0.0	0.03	14.94	0.00	2.022	2.02	8.04	1.2	98.8	0.0	-0.43	0.25	0.65	0.79	2.93	7729	422	12	0	907	0	0	logfile
✔	9BCP	44433	2025-03-06	2024-04-09	4.1	4.20	4.13	4.2	0.006	1.10	1.0	0.05	15.68	0.01	2.251	7.55	0.35	8.7	91.3	0.0	-2.81	0.70	0.75	—	4.2	0.003	0.67	0.0	0.04	14.56	0.00	2.406	5.53	0.00	8.0	92.0	0.0	-0.92	0.56	0.70	0.76	—	4162	618	5	0	2	1	0	logfile
✔	9BCN	44431	2025-03-11	2024-04-09	2.9	3.16	2.98	3.2	0.006	0.81	2.0	0.06	15.34	0.01	2.156	3.80	0.96	3.7	96.3	0.0	-0.99	0.72	0.85	4.67	3.2	0.003	0.68	0.0	0.04	15.92	0.00	2.518	3.34	1.77	2.4	97.6	0.0	0.58	1.13	0.69	0.85	3.67	6606	850	8	0	16	0	0	logfile
✔	9BCL	44429	2025-03-11	2024-04-09	2.9	3.20	3.02	3.2	0.005	0.76	1.0	0.07	14.78	0.00	2.149	3.19	0.31	3.3	96.7	0.0	-1.41	0.67	0.82	4.31	3.2	0.003	0.66	0.0	0.04	14.99	0.00	2.536	3.87	1.24	1.9	98.1	0.0	0.22	0.36	0.70	0.85	3.60	6719	850	8	0	18	0	0	logfile
✔	9BCo	44432	2025-03-11	2024-04-09	4.4	4.70	4.37	4.6	0.005	0.88	1.0	0.05	12.78	0.01	2.105	8.36	0.00	7.3	92.7	0.0	-1.99	0.75	0.73	—	4.6	0.002	0.60	0.0	0.04	11.01	0.00	2.490	2.56	0.00	3.3	96.7	0.0	1.02	0.70	0.75	0.74	—	6164	1038	4	0	2	0	0	logfile
✘	9EYK	50056	2025-03-11	2024-04-09	2.84	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6639	891	5	8	0	0	0	logfile
✔	9EYJ	50055	2025-03-06	2024-04-09	2.97	3.34	2.93	3.2	0.004	0.59	1.0	0.04	16.13	0.00	1.569	13.32	2.14	4.8	95.2	0.0	-0.70	0.70	0.72	2.62	3.2	0.003	0.58	0.0	0.04	16.35	0.00	2.529	9.28	2.94	4.5	95.5	0.0	-0.24	0.42	0.70	0.71	2.77	4334	576	3	4	0	0	0	logfile
✔	9EYi	50054	2025-03-14	2024-04-09	2.75	3.13	2.84	3.0	0.005	0.63	0.0	0.04	15.67	0.00	2.211	10.26	2.15	3.3	96.7	0.0	0.12	0.82	0.81	3.48	3.0	0.003	0.58	0.0	0.04	15.58	0.00	2.452	9.27	1.55	3.2	96.8	0.0	0.52	0.31	0.82	0.81	3.37	9453	1248	5	8	0	0	0	logfile
✔	8YZK	39696	2025-03-11	2024-04-07	3.4	2.39	3.43	1.7	0.003	0.76	0.0	0.04	18.28	0.01	2.181	13.45	1.07	8.9	91.1	0.0	-1.21	0.68	0.59	0.53	1.7	0.003	0.76	0.0	0.04	18.31	0.00	2.504	15.52	6.13	9.4	90.6	0.0	-1.20	0.91	0.69	0.63	0.48	6470	866	4	0	0	0	0	logfile
✔	8YZB	39688	2025-03-11	2024-04-06	3.29	3.29	3.39	1.8	0.003	0.54	1.0	0.04	7.28	0.00	2.242	2.62	1.43	2.2	97.8	0.0	-0.85	0.86	0.81	2.16	1.4	0.003	0.74	0.0	0.04	13.57	0.00	2.294	4.05	1.15	3.3	96.7	0.0	0.72	1.75	0.90	0.89	2.67	6448	792	2	0	0	0	0	logfile
✔	8YZD	39690	2025-03-11	2024-04-06	3.07	2.88	3.09	1.9	0.002	0.42	0.0	0.04	7.78	0.00	2.299	1.99	1.29	2.2	97.8	0.0	-1.69	0.87	0.87	2.54	1.5	0.004	0.62	0.0	0.04	14.18	0.00	2.047	2.39	2.01	3.4	96.6	0.0	0.53	0.65	0.90	0.92	2.38	6436	792	2	0	0	0	0	logfile
✔	9BBM	44422	2025-03-12	2024-04-06	3.2	3.01	3.09	3.2	0.012	2.05	4.0	0.11	13.73	0.01	2.513	0.00	0.51	12.7	82.4	4.9	-3.91	0.33	0.62	3.86	3.2	0.003	0.65	0.0	0.05	16.37	0.00	2.381	6.03	1.28	10.4	88.7	0.9	-3.28	1.33	0.34	0.73	3.99	6966	444	6	0	0	0	3558	logfile
✔	9BAZ	44415	2025-03-13	2024-04-05	2.76	3.45	2.80	3.3	0.004	0.63	0.0	0.04	16.56	0.00	2.117	12.04	0.50	3.2	96.8	0.0	0.19	0.71	0.71	2.69	3.3	0.003	0.66	0.0	0.04	16.86	0.00	2.417	9.47	3.02	3.4	96.6	0.0	0.19	0.29	0.71	0.72	2.38	8283	1090	5	0	1	0	0	logfile
✔	9EWY	50026	2025-03-11	2024-04-05	3.1	2.60	3.12	3.2	0.004	0.53	0.0	0.04	15.97	0.00	2.208	3.47	0.00	1.9	98.0	0.1	2.61	0.69	0.87	2.95	3.1	0.002	0.50	0.0	0.04	17.05	0.00	2.550	3.39	1.77	2.0	97.9	0.1	2.61	0.28	0.68	0.88	2.77	6496	815	2	0	3	0	0	logfile
✔	9BBC	44417	2025-03-13	2024-04-05	3.3	4.25	3.36	3.7	0.003	0.92	0.0	0.05	15.19	0.00	2.206	13.57	0.56	3.7	96.2	0.1	0.51	0.81	0.82	2.28	3.8	0.006	0.92	0.0	0.05	15.60	0.00	2.440	14.35	3.49	4.9	95.1	0.0	0.04	1.19	0.82	0.84	1.96	8440	1052	16	0	20	0	0	logfile
✔	9BAP	44410	2025-03-11	2024-04-04	2.88	3.32	2.89	3.3	0.003	0.58	0.0	0.04	15.77	0.00	2.159	9.48	0.84	3.3	96.7	0.0	-0.35	0.61	0.67	2.09	3.3	0.005	1.06	1.0	0.04	16.24	0.00	2.476	7.47	3.69	2.2	97.8	0.0	0.22	0.33	0.61	0.67	1.79	6535	887	3	0	1	0	0	logfile

• ← previous
• Page 19 of 219
• next →