Table showing results for March 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9B4F	44179	2025-03-06	2024-03-20	3.27	3.55	3.32	3.6	0.003	0.57	2.0	0.04	12.09	0.00	2.255	7.44	1.68	9.1	90.9	0.0	-2.07	0.58	0.80	3.31	3.6	0.002	0.52	0.0	0.04	14.42	0.00	2.552	4.57	2.85	7.7	92.3	0.0	1.13	0.83	0.51	0.78	3.02	5612	670	4	0	2	0	0	logfile
✔	8YQX	39509	2025-03-11	2024-03-20	2.97	3.17	3.00	3.2	0.003	0.52	0.0	0.04	16.27	0.00	2.198	8.03	0.72	3.7	96.3	0.0	-0.18	0.56	0.85	2.68	3.2	0.003	0.54	0.0	0.04	17.08	0.00	2.467	6.51	2.89	3.4	96.6	0.0	0.31	0.87	0.54	0.85	1.88	6167	766	3	0	0	0	0	logfile
✔	9EPR	19884	2025-03-12	2024-03-19	4.9	4.87	4.69	4.7	0.004	0.93	0.0	0.05	17.43	0.01	2.296	13.12	14.42	7.8	91.8	0.5	-3.94	0.67	0.73	—	4.7	0.003	0.76	0.0	0.05	12.95	0.00	2.346	15.05	0.00	6.5	93.5	0.0	-1.27	3.28	0.67	0.73	—	7046	890	5	0	1	0	0	logfile
✔	9B3M	44145	2025-03-05	2024-03-19	3.21	3.37	3.16	3.3	0.004	0.76	1.0	0.04	16.77	0.00	2.215	12.22	2.33	1.1	98.9	0.0	2.89	0.61	0.83	1.19	3.3	0.003	0.60	0.0	0.04	16.96	0.00	2.625	10.91	5.06	1.1	98.9	0.0	3.11	0.28	0.60	0.84	1.55	2669	365	1	0	0	0	0	logfile
✔	8YQQ	39502	2025-03-06	2024-03-19	3.95	2.96	3.86	3.4	0.008	1.28	0.0	0.07	17.14	0.04	1.447	16.88	8.03	9.9	87.3	2.8	-3.12	0.87	0.83	2.44	3.4	0.003	0.71	0.0	0.05	15.58	0.00	2.015	7.09	2.79	5.9	94.1	0.0	-1.41	0.96	0.87	0.83	2.53	5141	649	4	0	6	0	0	logfile
✔	9B3K	44143	2025-03-11	2024-03-19	2.56	2.75	2.56	2.9	0.004	0.59	0.0	0.04	17.05	0.00	2.195	8.40	4.35	3.6	96.4	0.0	1.63	0.69	0.85	2.99	2.9	0.004	0.60	0.0	0.04	16.97	0.00	2.522	7.00	3.15	3.6	96.4	0.0	1.86	0.19	0.67	0.86	3.00	6063	797	3	0	0	0	0	logfile
✔	9B3o	44147	2025-03-05	2024-03-19	3.18	3.36	3.12	3.3	0.003	0.60	0.0	0.04	16.77	0.00	2.295	10.17	0.00	2.5	97.5	0.0	2.11	0.61	0.85	1.52	3.3	0.004	0.62	0.0	0.04	16.90	0.00	2.528	8.83	3.61	2.0	98.0	0.0	2.63	0.24	0.61	0.86	1.39	2630	363	1	0	0	0	0	logfile
✔	9B3L	44144	2025-03-05	2024-03-19	3.25	3.40	3.12	3.3	0.003	0.54	0.0	0.04	15.96	0.00	2.274	9.17	0.40	2.6	97.4	0.0	2.14	0.61	0.84	1.47	3.4	0.004	0.65	0.0	0.04	16.30	0.00	2.560	8.98	6.32	2.0	98.0	0.0	2.29	0.42	0.60	0.84	1.72	2623	358	1	0	0	0	0	logfile
✔	9B34	44125	2025-03-05	2024-03-18	3.58	3.87	3.56	3.9	0.007	1.47	0.0	0.08	12.86	0.01	2.121	8.00	0.49	23.6	74.5	1.9	-5.95	0.68	0.68	1.73	3.8	0.005	1.04	0.0	0.05	16.41	0.01	1.991	18.52	3.70	23.2	75.7	1.1	-4.33	2.01	0.72	0.74	0.86	3619	474	4	0	4	0	0	logfile
✔	9B2Z	44118	2025-03-06	2024-03-18	2.83	3.06	2.86	3.0	0.007	0.82	0.0	0.05	15.83	0.01	2.200	8.50	0.18	3.4	96.6	0.0	-0.65	0.64	0.77	2.74	3.0	0.003	0.61	0.0	0.04	16.35	0.00	1.995	6.28	1.59	3.5	96.5	0.0	0.58	0.34	0.65	0.79	1.82	5506	711	4	0	4	0	0	logfile
✔	9B33	44124	2025-03-05	2024-03-18	4.07	4.25	3.97	4.2	0.007	1.56	0.0	0.08	13.12	0.01	2.141	8.98	0.49	23.2	75.3	1.5	-6.09	0.63	0.62	—	4.1	0.006	1.09	0.0	0.06	12.75	0.01	1.914	24.55	0.00	23.2	76.0	0.9	-4.94	1.23	0.70	0.71	—	3619	474	4	0	4	0	0	logfile
✔	9B2U	44115	2025-03-05	2024-03-16	3.64	3.89	3.64	3.9	0.003	0.78	0.0	0.04	17.96	0.00	2.144	14.41	0.67	4.3	95.7	0.0	-0.49	0.45	0.58	0.86	3.8	0.004	0.69	0.0	0.05	18.43	0.00	2.514	10.29	4.33	6.1	93.9	0.0	-0.80	0.78	0.57	0.69	1.43	2672	333	2	0	0	0	0	logfile
✔	9B23	44095	2025-03-06	2024-03-14	3.2	4.35	3.32	3.8	0.003	0.59	0.0	0.04	14.70	0.01	1.981	10.54	0.39	2.8	97.2	0.0	0.97	0.81	0.69	0.94	3.7	0.003	0.68	0.0	0.04	16.67	0.00	2.475	9.57	0.97	2.1	97.9	0.0	1.26	1.31	0.82	0.71	1.29	4670	568	2	0	0	0	0	logfile
✔	8YoY	39460	2025-03-06	2024-03-14	3.21	4.39	3.37	4.0	0.003	0.50	0.0	0.04	14.42	0.00	2.189	7.69	0.00	3.7	96.3	0.0	-1.35	0.72	0.43	0.88	3.9	0.003	0.78	0.0	0.05	15.78	0.00	2.512	19.94	2.78	5.9	94.0	0.2	-1.24	1.51	0.85	0.74	0.44	5081	653	2	0	0	0	0	logfile
✔	9EoG	19854	2025-03-05	2024-03-14	3.0	3.00	2.80	3.2	0.009	1.63	6.0	0.10	12.85	0.01	2.445	5.03	4.48	6.7	93.3	0.0	-4.10	0.39	0.90	4.14	3.2	0.008	0.88	0.0	0.06	15.20	0.00	2.520	9.92	1.49	5.6	94.4	0.0	-2.05	1.08	0.37	0.89	3.81	3522	462	6	0	0	0	0	logfile
✔	9Eo4	19845	2025-03-13	2024-03-14	2.66	2.89	2.69	3.0	0.006	0.72	0.0	0.04	15.98	0.02	1.915	5.57	0.87	1.8	98.2	0.0	1.45	0.49	0.83	4.04	3.0	0.002	0.47	0.0	0.03	14.82	0.00	2.101	4.57	0.44	0.6	99.4	0.0	1.67	0.82	0.56	0.87	4.34	8781	546	2	0	7	4	4322	logfile
✔	9Eo9	19849	2025-03-05	2024-03-14	3.3	3.30	3.20	3.4	0.016	1.57	0.0	0.10	14.49	0.01	2.638	3.72	5.88	7.3	92.7	0.0	-4.62	0.25	0.84	3.70	3.5	0.004	0.84	0.0	0.05	14.92	0.00	2.548	4.14	2.21	3.3	96.7	0.0	-2.39	1.26	0.29	0.78	3.62	1190	154	2	0	0	0	0	logfile
✔	9EoE	19852	2025-03-05	2024-03-14	2.3	2.15	2.24	2.2	0.009	1.54	2.0	0.10	14.88	0.01	2.621	4.14	4.41	8.0	92.0	0.0	-3.08	0.21	0.80	6.35	2.2	0.004	0.80	0.0	0.05	17.29	0.01	2.637	0.84	1.47	4.0	96.0	0.0	-2.13	1.29	0.27	0.84	7.38	595	77	1	0	0	0	0	logfile
✔	9EoH	19855	2025-03-05	2024-03-14	2.8	3.08	2.70	3.1	0.009	1.45	6.0	0.09	11.76	0.01	2.465	4.31	0.00	9.7	90.3	0.0	-3.95	0.48	0.89	6.19	3.1	0.004	0.80	0.0	0.05	17.46	0.00	2.551	6.60	3.33	4.4	95.6	0.0	-2.74	1.35	0.42	0.88	5.87	3414	444	6	0	0	0	0	logfile
✔	9B2C	44103	2025-03-06	2024-03-14	3.0	3.28	2.99	3.4	0.011	1.61	7.0	0.09	13.71	0.02	2.392	3.17	3.41	2.6	96.6	0.8	-0.08	0.71	0.78	5.61	3.4	0.003	0.64	0.0	0.04	13.41	0.00	2.578	4.93	2.27	2.9	96.9	0.2	-0.35	1.10	0.61	0.77	4.95	4596	657	6	0	4	0	0	logfile

• ← previous
• Page 23 of 219
• next →