Table showing results for March 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9B23	44095	2025-03-06	2024-03-14	3.2	4.35	3.32	3.8	0.003	0.59	0.0	0.04	14.70	0.01	1.981	10.54	0.39	2.8	97.2	0.0	0.97	0.81	0.69	0.94	3.7	0.003	0.68	0.0	0.04	16.67	0.00	2.475	9.57	0.97	2.1	97.9	0.0	1.26	1.31	0.82	0.71	1.29	4670	568	2	0	0	0	0	logfile
✔	9B1K	44082	2025-03-05	2024-03-13	3.3	3.55	3.32	3.5	0.006	0.74	0.0	0.04	10.55	0.00	2.265	1.26	0.00	1.8	98.2	0.0	0.11	0.55	0.79	2.89	3.5	0.003	0.60	0.0	0.04	14.29	0.00	2.573	5.30	2.91	2.2	97.8	0.0	1.91	1.13	0.53	0.78	1.86	3911	512	2	0	1	0	0	logfile
✔	9B1L	44083	2025-03-05	2024-03-13	3.1	3.41	3.20	3.4	0.006	0.79	0.0	0.04	11.09	0.00	2.349	0.49	0.00	1.3	98.7	0.0	0.53	0.51	0.79	3.77	3.4	0.003	0.51	0.0	0.04	13.96	0.00	2.617	3.55	2.10	0.8	99.2	0.0	2.12	0.80	0.53	0.80	3.16	4041	529	2	0	1	0	0	logfile
✔	9B1M	44084	2025-03-05	2024-03-13	3.0	3.43	3.12	3.4	0.004	0.77	0.0	0.04	11.40	0.01	2.431	0.62	0.00	1.2	98.8	0.0	-0.01	0.49	0.77	4.39	3.4	0.003	0.58	0.0	0.04	14.12	0.00	2.603	3.99	1.20	1.8	98.2	0.0	2.58	0.63	0.52	0.80	3.19	3961	515	2	0	2	0	0	logfile
✘	9ENQ	19838	2025-03-06	2024-03-13	2.12	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	5743	707	6	4	4	7	0	logfile
✔	9B1N	44085	2025-03-05	2024-03-13	3.1	3.52	3.26	3.5	0.005	0.79	0.0	0.04	11.09	0.01	2.454	0.75	0.00	1.6	98.4	0.0	-0.18	0.58	0.83	3.67	3.5	0.003	0.65	0.0	0.04	12.97	0.00	2.531	3.25	0.48	1.4	98.6	0.0	2.16	0.48	0.62	0.84	3.01	3954	515	2	0	2	0	0	logfile
✔	9B1J	44081	2025-03-05	2024-03-13	3.0	3.35	3.07	3.3	0.006	0.83	0.0	0.04	11.22	0.01	2.389	1.00	0.00	1.2	98.8	0.0	0.31	0.52	0.79	4.08	3.3	0.004	0.61	0.0	0.04	14.20	0.00	2.531	4.38	1.68	2.3	97.7	0.0	2.03	0.77	0.54	0.80	2.74	3953	515	2	0	3	0	0	logfile
✔	9B1o	44086	2025-03-05	2024-03-13	3.1	3.49	3.19	3.4	0.004	0.76	0.0	0.04	11.21	0.01	2.424	0.63	0.00	1.6	98.4	0.0	-0.17	0.57	0.83	3.90	3.4	0.003	0.58	0.0	0.04	13.72	0.00	2.608	4.63	1.68	1.9	98.1	0.0	2.39	0.55	0.56	0.82	3.09	3945	515	2	0	2	0	0	logfile
✔	9B1F	44077	2025-03-05	2024-03-13	2.9	3.23	2.97	3.2	0.004	0.61	0.0	0.04	11.29	0.00	2.308	1.38	0.00	1.2	98.8	0.0	0.97	0.59	0.81	3.59	3.2	0.003	0.59	0.0	0.04	14.34	0.00	2.531	4.51	1.92	1.2	98.8	0.0	2.10	0.79	0.56	0.80	2.96	3936	515	2	0	1	0	0	logfile
✔	9ENC	19831	2025-03-11	2024-03-12	3.36	4.12	3.44	3.9	0.002	0.51	0.0	0.04	21.40	0.00	2.232	3.79	0.20	5.3	94.7	0.0	-0.18	0.88	0.87	2.37	3.9	0.004	0.53	0.0	0.04	21.62	0.00	2.482	4.04	1.20	5.6	94.4	0.0	0.13	1.30	0.87	0.86	1.84	6249	566	3	75	0	0	0	logfile
✔	9B0L	44046	2025-03-12	2024-03-12	2.99	3.13	2.99	3.1	0.004	0.58	0.0	0.04	21.94	0.00	1.888	7.55	0.23	3.7	96.3	0.0	1.24	0.64	0.66	1.96	3.1	0.004	0.58	0.0	0.04	22.30	0.00	2.059	11.09	2.05	3.4	96.6	0.0	0.85	1.12	0.78	0.80	2.34	7051	466	6	155	2	0	0	logfile
✔	9ENF	19833	2025-03-12	2024-03-12	2.97	4.02	3.10	3.1	0.003	0.61	0.0	0.04	24.22	0.00	2.114	15.41	0.00	7.6	92.4	0.0	-1.68	0.78	0.64	1.13	3.1	0.003	0.61	0.0	0.03	24.19	0.00	2.149	10.16	1.29	5.7	94.3	0.0	-1.73	0.99	0.78	0.65	0.84	8235	530	4	182	0	0	0	logfile
✔	9ENE	19832	2025-03-12	2024-03-12	3.15	3.87	3.19	3.4	0.004	0.64	0.0	0.06	22.56	0.01	2.233	7.49	1.04	5.9	94.1	0.0	-0.77	0.89	0.87	2.75	3.4	0.003	0.61	0.0	0.06	22.25	0.00	2.260	3.58	2.60	6.7	93.3	0.0	-0.76	0.26	0.89	0.87	2.28	8484	658	4	146	0	0	0	logfile
✔	9ENB	19830	2025-03-12	2024-03-12	2.66	3.33	2.75	3.1	0.006	0.55	0.0	0.04	22.37	0.00	2.149	4.96	0.72	4.7	95.3	0.0	-0.08	0.86	0.88	4.12	3.1	0.004	0.52	0.0	0.04	22.12	0.00	2.083	3.15	0.54	4.2	95.8	0.0	0.67	0.87	0.85	0.87	3.73	8264	636	6	144	6	0	0	logfile
✔	8YN3	39413	2025-03-12	2024-03-10	2.56	2.65	2.55	2.7	0.003	0.46	0.0	0.05	9.76	0.00	2.248	3.92	0.79	1.4	98.6	0.0	1.26	0.72	0.86	4.65	2.7	0.003	0.51	0.0	0.04	14.22	0.00	2.457	4.22	2.37	1.8	98.2	0.0	1.83	0.40	0.71	0.86	3.54	8201	1042	6	0	2	0	0	logfile
✔	8YN4	39414	2025-03-13	2024-03-10	2.97	3.15	2.95	3.1	0.002	0.40	0.0	0.04	8.47	0.00	2.276	4.44	0.33	1.1	98.9	0.0	1.49	0.67	0.81	3.52	3.1	0.005	0.64	0.0	0.05	14.67	0.00	2.478	7.13	3.07	2.3	97.7	0.0	1.51	1.63	0.68	0.82	3.38	8661	1127	6	0	2	0	0	logfile
✔	8YN9	39419	2025-03-13	2024-03-10	2.3	2.56	2.39	2.5	0.004	0.63	0.0	0.06	10.63	0.00	2.237	4.32	0.73	1.5	98.5	0.0	1.12	0.70	0.84	5.10	2.5	0.003	0.86	1.0	0.04	13.42	0.00	2.364	5.93	1.88	2.5	97.5	0.0	1.63	0.38	0.71	0.85	4.42	9048	1130	6	0	8	2	0	logfile
✔	8YN5	39415	2025-03-13	2024-03-10	2.7	2.85	2.68	2.8	0.002	0.53	0.0	0.06	9.60	0.00	2.209	4.33	0.42	1.6	98.4	0.0	1.27	0.71	0.85	4.97	2.8	0.004	0.59	0.0	0.04	13.52	0.00	2.528	5.38	1.67	1.8	98.2	0.0	1.95	1.17	0.71	0.86	3.81	9047	1141	6	0	6	0	0	logfile
✔	8YN2	39412	2025-03-13	2024-03-10	2.66	2.92	2.71	2.9	0.003	0.56	0.0	0.06	9.78	0.00	2.180	4.42	0.64	1.5	98.5	0.0	1.29	0.71	0.85	4.63	2.9	0.002	0.54	0.0	0.04	14.03	0.00	2.518	4.65	2.02	2.3	97.7	0.0	2.07	0.48	0.71	0.85	3.55	8979	1131	6	0	6	0	0	logfile
✘	8YMP	39402	2025-03-14	2024-03-09	2.6	3.14	2.77	3.2	0.008	1.42	12.0	0.09	25.41	0.01	2.057	14.00	37.57	10.6	87.2	2.2	-3.93	0.45	0.50	1.19	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9570	1184	4	0	2	0	0	logfile

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