Table showing results for March 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8YMK	39396	2025-03-05	2024-03-09	3.7	3.92	1.91	7.8	0.005	1.22	1.0	0.06	11.93	0.01	2.212	16.34	0.00	14.1	84.4	1.6	-1.73	0.59	0.62	-0.11	7.8	0.003	1.10	0.0	0.06	13.44	0.00	2.625	10.83	3.01	10.9	87.7	1.3	-1.00	1.83	0.60	0.63	-0.02	2744	452	2	0	0	0	0	logfile
✔	9EME	19818	2025-03-06	2024-03-08	2.92	3.09	2.69	3.1	0.015	2.12	0.0	0.12	14.21	0.01	2.562	0.00	0.00	0.0	100.0	0.0	-4.40	0.34	0.61	5.02	3.1	0.003	0.62	0.0	0.04	15.84	0.00	2.547	3.37	0.90	3.4	96.6	0.0	-2.95	1.18	0.49	0.83	5.35	4140	552	6	0	0	0	0	logfile
✔	9AYB	43984	2025-03-05	2024-03-07	3.19	3.65	3.19	3.6	0.003	0.52	0.0	0.04	12.73	0.00	2.313	2.08	0.57	0.9	99.1	0.0	1.23	0.44	0.79	2.78	3.6	0.003	0.54	0.0	0.04	14.20	0.00	2.610	3.57	1.70	1.4	98.6	0.0	1.89	0.32	0.43	0.79	2.06	3347	428	1	0	0	0	0	logfile
✔	9EM9	19814	2025-03-12	2024-03-07	3.76	4.06	3.82	4.0	0.004	0.75	0.0	0.04	14.92	0.01	1.853	3.14	0.00	5.1	94.9	0.0	-0.71	0.80	0.71	2.12	3.9	0.003	0.77	0.0	0.04	15.63	0.00	1.907	8.31	1.70	2.4	97.6	0.0	0.69	1.46	0.84	0.76	1.84	8182	1024	4	0	4	0	0	logfile
✔	9AXC	43932	2025-03-13	2024-03-06	4.16	3.88	3.99	3.8	0.005	1.00	0.0	0.06	13.78	0.01	2.243	5.98	0.21	4.2	95.6	0.2	-1.06	0.72	0.77	—	3.8	0.003	0.66	0.0	0.05	14.00	0.00	2.467	10.30	0.00	3.5	96.4	0.1	0.39	0.62	0.74	0.78	—	8677	1079	6	0	2	0	0	logfile
✔	8YKW	39374	2025-03-13	2024-03-05	2.75	3.17	2.86	3.1	0.004	0.65	0.0	0.04	14.75	0.00	2.239	3.36	0.54	2.9	97.1	0.0	1.10	0.65	0.86	3.50	3.1	0.003	0.58	0.0	0.04	15.74	0.00	2.519	4.40	1.40	2.5	97.5	0.0	1.77	0.42	0.63	0.86	3.39	8718	1124	6	0	1	0	0	logfile
✔	8YKV	39373	2025-03-13	2024-03-05	2.48	2.87	2.63	2.8	0.004	0.63	0.0	0.04	15.42	0.00	1.997	2.62	0.54	1.8	98.2	0.0	1.66	0.63	0.86	4.58	2.8	0.003	0.58	0.0	0.04	16.38	0.00	2.553	5.65	2.90	2.0	98.0	0.0	1.51	0.90	0.61	0.86	4.14	8665	1110	6	0	1	0	0	logfile
✔	8S86	19798	2025-03-11	2024-03-05	2.8	3.06	2.70	3.0	0.008	1.18	2.0	0.07	13.44	0.01	2.292	8.93	2.24	6.7	93.3	0.0	-2.43	0.56	0.62	3.43	3.0	0.003	0.69	0.0	0.05	15.83	0.00	2.439	14.91	2.69	3.6	96.4	0.0	0.02	1.20	0.61	0.65	2.28	6177	785	2	0	0	0	0	logfile
✔	8YKX	39375	2025-03-13	2024-03-05	2.69	3.09	2.85	3.0	0.004	0.61	0.0	0.04	14.75	0.00	2.222	4.28	0.43	2.9	97.1	0.0	1.26	0.58	0.82	4.43	3.0	0.004	0.58	0.0	0.04	15.50	0.00	2.581	5.20	1.72	2.3	97.7	0.0	1.50	0.43	0.61	0.85	4.14	8710	1121	6	0	1	0	0	logfile
✔	8YJY	39353	2025-03-06	2024-03-03	3.3	3.57	3.38	3.5	0.004	0.74	0.0	0.04	17.28	0.01	2.175	9.73	0.22	3.8	96.2	0.0	1.48	0.66	0.74	2.15	3.6	0.003	0.66	0.0	0.04	18.08	0.00	2.462	7.48	2.86	5.2	94.8	0.0	1.77	0.86	0.66	0.74	1.49	4254	530	2	0	0	0	0	logfile
✔	9AVi	43902	2025-03-12	2024-03-03	3.02	3.96	3.03	3.7	0.013	1.94	0.0	0.08	14.20	0.01	2.430	9.05	6.29	7.9	92.1	0.0	-5.11	0.80	0.89	2.43	3.7	0.003	0.64	0.0	0.03	15.02	0.00	2.500	4.67	2.17	0.9	99.1	0.0	4.50	0.68	0.75	0.84	1.40	8370	1080	5	0	0	0	0	logfile
✔	8YJP	39345	2025-03-06	2024-03-02	3.09	2.27	3.11	2.1	0.009	1.46	0.0	0.08	22.11	0.01	2.240	15.97	0.00	4.7	95.3	0.0	1.56	0.72	0.69	2.05	2.1	0.003	0.64	0.0	0.04	17.72	0.00	2.468	10.25	2.45	3.4	96.6	0.0	2.45	1.02	0.76	0.76	1.66	4946	596	4	0	13	0	0	logfile
✔	8YJH	39342	2025-03-14	2024-03-01	3.68	3.64	3.66	3.7	0.005	1.04	0.0	0.06	18.97	0.01	2.256	4.67	0.00	5.2	94.8	0.0	-3.68	0.80	0.78	2.04	3.7	0.004	0.67	0.0	0.04	19.76	0.00	2.500	12.76	2.37	3.9	96.1	0.0	-1.27	1.27	0.82	0.81	1.71	9735	1115	8	53	0	0	0	logfile
✔	8Yi7	39311	2025-03-06	2024-02-29	3.57	3.79	3.53	3.8	0.013	1.60	4.0	0.11	13.65	0.00	2.122	9.97	1.75	4.2	95.8	0.0	0.53	0.67	0.77	2.41	3.7	0.003	0.62	0.0	0.04	15.07	0.00	2.513	5.35	2.86	2.6	97.4	0.0	0.38	1.48	0.71	0.84	2.04	5586	697	6	0	4	0	0	logfile
✔	8S7E	19768	2025-03-12	2024-02-29	3.4	3.72	3.43	3.6	0.003	0.55	0.0	0.04	18.59	0.00	1.902	20.70	0.25	7.8	92.2	0.0	-1.51	0.59	0.55	0.28	3.6	0.003	0.59	0.0	0.05	18.95	0.00	2.374	12.66	2.96	6.0	94.0	0.0	-1.23	0.46	0.58	0.56	-0.16	7312	466	2	0	0	0	3648	logfile
✔	9AUF	43878	2025-03-12	2024-02-29	2.73	2.96	2.73	3.0	0.005	0.73	0.0	0.05	21.70	0.01	2.331	3.00	0.57	2.9	97.1	0.0	-0.18	0.72	0.88	5.39	3.0	0.004	0.57	0.0	0.04	21.92	0.00	2.361	6.08	3.69	2.6	97.4	0.0	1.23	0.87	0.72	0.88	4.93	7251	389	5	192	0	0	0	logfile
✔	8S7D	19766	2025-03-06	2024-02-29	3.2	3.46	3.22	3.5	0.003	0.57	0.0	0.04	19.45	0.00	2.090	13.28	4.70	3.5	96.5	0.0	-0.33	0.55	0.71	1.65	3.5	0.003	0.60	0.0	0.04	19.17	0.00	2.219	12.18	4.21	3.8	96.2	0.0	-0.16	0.33	0.58	0.71	1.78	5488	691	4	0	0	0	0	logfile
✔	8YHo	39290	2025-03-11	2024-02-28	2.8	3.60	2.94	3.4	0.018	1.52	4.0	0.08	12.89	0.01	2.200	13.51	1.83	8.2	91.3	0.5	-4.81	0.77	0.81	3.05	3.4	0.004	0.85	0.0	0.04	15.06	0.00	2.552	11.74	1.97	7.1	92.9	0.0	-0.42	1.34	0.76	0.79	2.28	6206	759	3	0	0	0	0	logfile
✘	8YH6	39282	2025-03-13	2024-02-27	3.62	4.12	—	3.7	0.012	1.43	0.0	0.09	14.43	0.03	2.215	12.85	0.94	4.9	95.0	0.1	-2.37	0.57	0.50	0.66	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8706	1104	6	0	1	0	0	logfile
✔	8YH3	39280	2025-03-13	2024-02-27	3.4	4.05	—	3.7	0.010	1.22	0.0	0.08	13.86	0.02	2.121	9.79	1.15	4.5	95.3	0.2	-0.72	0.61	0.58	0.55	3.8	0.004	0.83	0.0	0.05	16.20	0.00	2.419	14.40	2.10	4.8	95.2	0.0	0.17	1.86	0.67	0.74	0.88	8691	1103	6	0	1	0	0	logfile

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