Table showing results for March 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8YGT	39263	2025-03-05	2024-02-27	3.01	2.18	2.96	2.1	0.007	1.00	0.0	0.06	9.09	0.01	2.374	1.88	0.00	5.9	94.1	0.0	-3.14	0.56	0.80	3.94	2.0	0.004	0.66	0.0	0.04	13.49	0.00	2.603	3.33	3.08	6.8	93.2	0.0	-1.12	0.56	0.58	0.82	3.51	3518	449	4	0	0	0	0	logfile
✔	8YH0	39278	2025-03-13	2024-02-27	2.86	3.63	—	3.3	0.004	0.66	0.0	0.06	13.13	0.00	2.070	8.58	0.00	3.7	96.2	0.1	-0.02	0.68	0.71	1.98	3.4	0.004	0.87	0.0	0.05	16.09	0.01	2.331	12.44	3.25	3.9	96.1	0.0	-0.03	1.59	0.71	0.79	1.58	8693	1103	6	0	1	0	0	logfile
✔	8YGU	39264	2025-03-05	2024-02-27	3.13	2.22	3.06	2.0	0.006	0.92	0.0	0.06	8.81	0.01	2.179	1.51	0.00	5.9	94.1	0.0	-3.27	0.58	0.78	4.48	2.1	0.004	0.65	0.0	0.04	13.55	0.00	2.419	3.30	4.16	6.3	93.7	0.0	-0.96	1.25	0.60	0.81	3.97	3693	474	5	0	0	0	0	logfile
✔	8YH2	39279	2025-03-13	2024-02-27	3.27	4.08	—	3.8	0.004	0.63	0.0	0.04	13.42	0.00	1.993	10.72	0.00	4.0	95.9	0.1	-0.01	0.66	0.68	1.10	3.8	0.003	0.80	0.0	0.05	16.28	0.00	2.548	14.99	3.36	4.3	95.6	0.1	0.04	1.57	0.65	0.70	0.71	8690	1103	6	0	1	0	0	logfile
✔	8YH5	39281	2025-03-13	2024-02-27	3.66	4.08	—	3.8	0.004	0.72	0.0	0.04	13.33	0.02	2.102	11.23	0.10	6.5	93.5	0.0	-1.50	0.62	0.62	0.60	3.8	0.004	0.85	0.0	0.05	16.38	0.00	2.411	13.82	3.88	4.8	95.1	0.1	-0.38	1.15	0.64	0.67	0.35	8695	1103	6	0	1	0	0	logfile
✔	8YGR	39260	2025-03-11	2024-02-26	3.84	2.36	3.79	2.3	0.014	1.78	3.0	0.11	12.37	0.01	2.279	1.64	0.00	3.5	96.5	0.0	-2.89	0.52	0.63	2.84	2.2	0.003	0.66	0.0	0.04	14.92	0.00	2.527	6.99	4.01	4.1	95.9	0.0	-1.64	0.76	0.63	0.74	3.41	5900	745	3	0	0	0	0	logfile
✔	8YGS	39261	2025-03-14	2024-02-26	3.47	2.24	3.47	2.2	0.011	1.47	5.0	0.11	11.76	0.01	2.320	2.13	0.00	5.9	94.0	0.1	-3.41	0.46	0.66	3.05	2.1	0.006	0.77	0.0	0.05	15.12	0.00	2.480	5.64	3.79	5.3	94.7	0.0	-1.60	1.26	0.57	0.79	3.26	9291	1187	7	0	0	0	0	logfile
✔	9ASo	43821	2025-03-14	2024-02-26	2.9	3.56	2.93	3.1	0.003	0.60	0.0	0.05	17.62	0.00	2.281	3.38	1.04	1.6	98.4	0.0	1.28	0.80	0.66	2.99	3.1	0.004	0.58	0.0	0.04	17.45	0.00	2.410	3.33	0.58	2.4	97.6	0.0	1.45	0.89	0.88	0.90	2.82	9426	966	6	71	4	2	0	logfile
✔	8S5W	19752	2025-03-05	2024-02-26	3.05	3.14	2.97	3.1	0.012	0.84	0.0	0.04	17.30	0.00	2.313	5.50	0.24	6.5	93.5	0.0	-1.89	0.56	0.80	2.00	3.1	0.003	0.58	0.0	0.04	17.90	0.00	2.583	5.12	4.51	4.0	96.0	0.0	0.96	0.89	0.60	0.85	2.72	4009	502	3	0	1	0	0	logfile
✔	8S61	19754	2025-03-05	2024-02-26	3.53	3.76	3.48	3.7	0.008	0.63	0.0	0.04	16.57	0.00	1.994	5.65	0.00	6.7	93.3	0.0	-1.96	0.61	0.83	2.65	3.7	0.004	0.62	0.0	0.04	17.09	0.00	2.588	5.15	3.56	6.5	93.5	0.0	-0.32	4.16	0.69	0.85	2.27	3990	502	3	0	1	0	0	logfile
✔	8S5U	19750	2025-03-05	2024-02-26	3.28	3.39	3.21	3.3	0.009	0.71	0.0	0.04	15.77	0.01	2.338	5.38	0.47	3.6	96.4	0.0	-0.65	0.65	0.83	3.31	3.3	0.003	0.57	0.0	0.04	16.46	0.00	2.606	4.25	1.89	2.4	97.6	0.0	1.70	0.96	0.70	0.86	3.06	3998	502	3	0	2	0	0	logfile
✔	9AST	43825	2025-03-13	2024-02-26	3.07	2.24	3.09	2.1	0.004	0.70	0.0	0.05	15.90	0.00	0.114	6.75	2.16	2.4	97.2	0.4	0.39	0.74	0.77	2.51	2.1	0.002	0.51	0.0	0.04	16.03	0.00	2.520	3.97	3.29	2.3	97.6	0.1	1.28	0.33	0.74	0.77	2.32	8876	1134	6	0	0	0	0	logfile
✔	8YFX	39232	2025-03-11	2024-02-25	3.56	3.75	3.46	3.7	0.004	0.65	0.0	0.04	16.59	0.00	2.071	9.89	0.28	6.1	93.9	0.0	0.74	0.52	0.71	1.68	3.7	0.003	0.61	0.0	0.04	16.95	0.00	2.485	8.14	2.84	5.1	94.9	0.0	1.63	1.17	0.51	0.70	1.42	6588	792	2	0	0	0	0	logfile
✔	8YFW	39231	2025-03-13	2024-02-25	3.65	3.82	3.62	3.7	0.004	0.74	0.0	0.04	15.86	0.01	2.152	13.17	0.28	4.7	95.0	0.3	1.70	0.56	0.70	1.25	3.7	0.003	0.67	0.0	0.04	16.33	0.00	2.479	10.32	3.13	4.0	95.8	0.3	2.45	0.49	0.56	0.71	0.86	8419	1161	2	0	0	0	0	logfile
✔	8YFT	39229	2025-03-11	2024-02-25	3.16	4.17	3.25	3.6	0.004	0.63	2.0	0.05	13.01	0.01	2.261	4.81	0.58	4.1	95.6	0.3	-0.17	0.81	0.66	1.68	3.7	0.003	0.65	0.0	0.04	14.82	0.00	2.508	6.07	2.03	3.7	96.1	0.1	0.43	1.74	0.87	0.79	1.74	6508	783	7	0	10	0	0	logfile
✔	8YFU	39230	2025-03-13	2024-02-25	4.59	4.78	4.50	4.6	0.003	0.67	0.0	0.04	12.85	0.00	2.081	12.72	0.00	5.3	94.4	0.3	1.47	0.55	0.70	—	4.6	0.004	0.67	0.0	0.04	12.89	0.00	2.372	11.71	0.00	5.0	94.7	0.3	1.95	0.47	0.55	0.71	—	8419	1161	2	0	0	0	0	logfile
✔	9ASD	43813	2025-03-05	2024-02-25	3.3	3.51	3.26	3.6	0.011	1.51	4.0	0.09	11.03	0.02	2.348	2.18	1.35	4.4	95.6	0.0	0.14	0.67	0.76	4.80	3.5	0.006	0.77	0.0	0.05	13.70	0.00	2.606	5.27	1.35	4.6	95.1	0.2	-0.23	1.18	0.71	0.82	4.50	3013	419	4	0	2	0	0	logfile
✔	8YF4	39210	2025-03-11	2024-02-24	3.41	3.59	3.32	3.6	0.003	0.55	0.0	0.04	17.00	0.00	2.064	7.25	0.86	5.2	94.8	0.0	0.92	0.56	0.73	1.36	3.6	0.003	0.55	0.0	0.04	17.24	0.00	2.513	6.27	4.57	5.4	94.6	0.0	1.77	1.59	0.54	0.73	1.64	6620	786	4	0	2	0	0	logfile
✔	8YFD	39220	2025-03-11	2024-02-24	3.57	3.79	3.57	3.8	0.003	0.68	0.0	0.04	17.76	0.00	2.195	9.97	0.57	6.1	93.5	0.4	0.20	0.56	0.77	1.34	3.8	0.003	0.61	0.0	0.04	17.89	0.00	2.513	8.30	4.12	6.5	93.3	0.3	0.98	0.41	0.56	0.77	1.06	6588	792	2	0	0	0	0	logfile
✔	8YF0	39206	2025-03-13	2024-02-23	3.49	3.73	3.58	3.7	0.003	0.59	0.0	0.04	14.65	0.00	2.271	10.72	0.00	2.8	97.2	0.0	0.97	0.52	0.61	0.74	3.7	0.003	0.65	0.0	0.04	16.76	0.00	2.487	11.49	2.47	2.3	97.7	0.0	1.27	0.42	0.54	0.64	0.60	9181	1159	2	0	0	0	0	logfile

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