Table showing results for April 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7X6L	33023	2022-04-06	2022-03-07	3.7	2.76	—	2.2	0.002	0.45	0.0	0.04	7.43	0.00	2.291	4.47	2.04	1.9	97.9	0.2	-3.07	0.64	0.56	0.95	2.2	0.004	0.85	0.0	0.05	13.89	0.01	2.048	19.03	0.42	4.2	95.6	0.1	-1.53	1.02	0.67	0.62	1.07	21486	2781	12	0	0	0	0	logfile
✔	7X6o	33024	2022-04-06	2022-03-07	3.5	2.65	—	3.8	0.002	0.48	0.0	0.04	8.09	0.00	2.283	3.17	1.82	2.0	98.0	0.0	-3.07	0.60	0.53	0.73	2.1	0.008	1.03	1.0	0.05	12.91	0.01	2.072	18.21	0.50	4.8	95.2	0.0	-1.04	1.58	0.64	0.59	1.03	21609	2787	12	0	0	0	0	logfile
✔	7U46	26330	2022-04-07	2022-02-28	2.68	3.21	2.68	3.1	0.011	0.79	0.0	0.06	27.18	0.01	2.200	4.23	0.77	3.1	96.9	0.0	-0.24	0.60	0.79	4.78	3.1	0.004	0.64	0.0	0.04	27.79	0.00	2.042	3.45	1.15	2.5	97.5	0.0	1.71	0.47	0.57	0.77	3.53	24375	925	11	290	0	0	11015	logfile
✔	7X08	32920	2022-04-08	2022-02-21	2.7	2.78	—	2.8	0.009	0.94	0.0	0.10	16.94	0.01	1.910	14.34	10.68	8.4	90.6	0.9	-2.76	0.63	0.76	2.77	2.7	0.005	0.72	0.0	0.05	16.61	0.00	2.172	6.06	4.06	6.0	93.8	0.1	-0.88	0.68	0.69	0.83	2.95	36396	4572	36	0	81	0	0	logfile
✔	7U12	26275	2022-04-04	2022-02-19	3.5	3.59	—	4.4	0.011	1.02	0.0	0.07	16.79	0.01	2.160	20.06	5.51	8.0	92.0	0.0	-3.00	0.29	0.45	2.77	4.2	0.005	0.86	0.0	0.06	15.96	0.00	2.181	16.28	0.00	10.5	89.5	0.0	-3.98	2.91	0.34	0.57	2.51	3456	405	6	0	12	0	0	logfile
✔	7U15	26278	2022-04-04	2022-02-19	3.0	3.14	—	3.3	0.006	1.18	0.0	0.12	17.37	0.01	1.886	12.16	3.44	3.8	96.2	0.0	-6.51	0.26	0.64	1.55	3.2	0.003	0.74	0.0	0.11	17.44	0.00	1.928	11.58	3.17	16.8	83.2	0.0	-5.23	1.48	0.27	0.69	2.64	6684	405	6	0	12	0	3255	logfile
✔	7U13	26276	2022-04-04	2022-02-19	2.9	3.67	—	4.2	0.017	2.41	0.0	0.07	17.78	0.01	2.120	29.95	6.30	11.3	88.0	0.8	-3.06	0.30	0.47	1.37	4.2	0.016	1.69	0.0	0.06	18.32	0.01	1.980	40.70	3.15	11.0	89.0	0.0	-3.17	3.39	0.28	0.50	1.09	3456	405	6	0	12	0	0	logfile
✔	7U10	26273	2022-04-04	2022-02-19	3.0	3.45	—	4.3	0.003	0.57	0.0	0.05	15.69	0.00	2.230	10.70	0.00	6.8	93.2	0.0	-2.82	0.37	0.64	3.73	4.2	0.004	0.66	0.0	0.07	18.06	0.01	2.203	12.01	3.17	7.3	92.7	0.0	-3.34	2.75	0.21	0.56	3.09	3429	405	6	0	12	0	0	logfile
✔	7U16	26279	2022-04-04	2022-02-19	2.7	3.30	—	3.5	0.003	0.55	0.0	0.05	14.72	0.00	2.310	8.58	0.00	6.8	93.2	0.0	-2.67	0.29	0.68	2.62	3.5	0.004	0.57	0.0	0.06	16.80	0.00	2.186	8.00	0.79	5.8	94.2	0.0	-2.64	1.73	0.37	0.80	4.99	3456	405	6	0	12	0	0	logfile
✔	7U14	26277	2022-04-04	2022-02-19	4.5	4.22	—	4.6	0.006	0.90	0.0	0.06	18.13	0.00	2.369	21.08	6.30	10.5	89.5	0.0	-3.07	0.30	0.52	—	4.4	0.006	0.96	0.0	0.07	15.68	0.00	2.175	21.08	0.00	14.8	85.2	0.0	-4.22	1.65	0.34	0.63	—	3456	405	6	0	12	0	0	logfile
✔	7U0Z	26268	2022-04-04	2022-02-19	4.2	3.55	—	4.3	0.004	0.75	0.0	0.05	11.44	0.00	2.146	12.81	0.00	1.9	98.1	0.0	-2.57	0.41	0.71	—	4.3	0.002	0.65	0.0	0.05	12.19	0.00	2.255	10.05	0.00	4.0	96.0	0.0	-3.01	0.66	0.37	0.70	—	2487	330	3	0	0	0	0	logfile
✔	7U11	26274	2022-04-04	2022-02-19	3.2	2.77	—	3.4	0.004	0.67	0.0	0.06	16.16	0.00	2.186	14.68	2.36	6.0	94.0	0.0	-2.79	0.29	0.64	3.31	3.3	0.005	0.74	0.0	0.06	17.39	0.00	2.138	11.48	0.26	10.0	90.0	0.0	-3.49	1.44	0.31	0.69	3.96	3456	405	6	0	12	0	0	logfile
✔	7YXY	14369	2022-04-05	2022-02-16	3.1	3.25	3.02	3.1	0.003	0.59	0.0	0.04	13.93	0.00	2.219	10.72	0.00	4.9	95.0	0.1	0.42	0.64	0.78	1.95	3.1	0.006	0.84	0.0	0.04	15.84	0.00	2.186	11.08	0.20	4.9	95.1	0.1	0.82	0.50	0.64	0.80	1.76	14031	1739	1	0	0	0	0	logfile
✔	7YXX	14368	2022-04-09	2022-02-16	3.3	3.86	3.20	3.1	0.003	0.63	0.0	0.04	14.01	0.00	2.196	12.37	0.26	5.1	94.7	0.2	-0.96	0.81	0.75	1.65	3.1	0.004	0.68	0.0	0.04	15.13	0.00	2.132	13.43	0.06	5.3	94.6	0.1	0.44	0.96	0.80	0.74	1.34	42357	5249	3	0	0	0	0	logfile
✔	7TZF	26208	2022-04-05	2022-02-15	2.4	2.00	2.39	2.3	0.004	0.52	0.0	0.04	14.53	0.00	2.252	4.74	1.43	1.0	99.0	0.0	-2.36	0.54	0.77	4.70	2.0	0.004	0.63	0.0	0.04	16.84	0.00	2.207	6.20	1.72	1.9	98.1	0.0	0.56	0.84	0.56	0.80	4.91	10342	1272	13	0	19	25	0	logfile
✔	7TYo	26190	2022-04-04	2022-02-14	2.7	2.09	2.60	2.4	0.002	0.46	0.0	0.04	12.83	0.00	2.176	5.44	1.37	2.0	98.0	0.0	-3.13	0.54	0.74	3.81	2.7	0.010	0.79	1.0	0.04	16.30	0.01	2.091	8.42	2.33	2.3	97.7	0.0	-0.03	1.06	0.55	0.76	3.60	9052	1141	6	0	4	0	0	logfile
✔	7TYY	26199	2022-04-05	2022-02-14	3.0	2.60	2.90	2.9	0.003	0.57	0.0	0.04	13.31	0.00	2.174	7.21	2.03	1.8	98.2	0.0	-3.39	0.59	0.78	3.16	2.9	0.003	0.59	0.0	0.04	16.24	0.00	2.132	12.53	2.95	2.7	97.3	0.0	-0.13	0.59	0.63	0.82	3.24	9802	1250	11	0	9	7	0	logfile
✔	7TYW	26196	2022-04-05	2022-02-14	3.0	2.92	2.97	3.1	0.004	0.67	1.0	0.04	13.08	0.00	2.199	5.38	1.41	1.9	98.1	0.0	-4.19	0.58	0.75	2.71	3.1	0.010	1.24	2.0	0.05	15.99	0.01	1.780	8.46	2.52	2.1	97.9	0.0	-0.14	0.57	0.61	0.79	2.49	9779	1256	10	0	7	1	0	logfile
✔	7TYF	26178	2022-04-05	2022-02-13	2.2	2.16	2.13	2.2	0.004	0.57	0.0	0.04	14.43	0.00	2.234	4.82	0.87	1.8	98.2	0.0	-1.73	0.64	0.82	5.12	2.2	0.002	0.60	0.0	0.05	15.92	0.00	2.183	6.50	1.36	1.5	98.5	0.0	0.75	0.50	0.66	0.84	4.40	10331	1266	12	0	16	83	0	logfile
✔	7TYL	26184	2022-04-04	2022-02-13	3.3	3.46	3.18	3.5	0.003	0.59	0.0	0.04	12.73	0.00	2.245	6.41	0.43	1.8	98.1	0.2	-2.52	0.61	0.67	2.72	3.5	0.003	0.57	0.0	0.04	14.85	0.00	2.204	8.28	0.32	3.1	96.9	0.0	-0.02	0.42	0.66	0.78	2.30	8978	1156	6	0	1	0	0	logfile

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