Table showing results for April 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9M0S	63562	2025-04-26	2025-02-25	3.5	3.73	3.47	3.7	0.010	1.18	0.0	0.07	13.21	0.01	2.279	5.66	0.00	3.3	96.7	0.0	-3.69	0.46	0.77	2.61	3.7	0.003	0.61	0.0	0.04	15.28	0.00	2.508	7.98	2.19	2.4	97.6	0.0	1.26	0.43	0.42	0.75	0.83	3413	424	2	0	1	0	0	logfile
✔	9M0D	63543	2025-04-27	2025-02-24	3.41	3.65	3.38	3.6	0.005	0.66	0.0	0.04	12.64	0.01	2.064	6.57	0.58	6.0	94.0	0.0	-1.04	0.64	0.74	2.91	3.6	0.006	0.69	0.0	0.04	13.13	0.00	2.492	7.49	4.39	9.4	90.5	0.1	-0.36	0.92	0.66	0.79	2.75	6312	1044	4	0	0	0	0	logfile
✔	9iHC	52864	2025-04-27	2025-02-21	2.95	3.58	3.00	3.4	0.003	0.58	0.0	0.04	14.94	0.00	2.349	5.33	0.62	2.0	98.0	0.0	0.55	0.84	0.88	3.98	3.4	0.005	0.56	0.0	0.04	16.20	0.00	2.602	6.05	1.87	1.8	98.2	0.0	0.95	0.35	0.83	0.87	4.15	4288	560	3	0	0	0	0	logfile
✔	9LYP	63514	2025-04-27	2025-02-20	3.6	3.97	3.62	3.7	0.004	0.88	0.0	0.05	11.36	0.01	2.150	8.36	0.00	8.1	91.9	0.0	-0.89	0.82	0.76	2.48	3.7	0.003	0.74	0.0	0.04	14.07	0.00	2.427	8.04	2.21	6.5	93.5	0.0	-0.11	1.03	0.85	0.81	2.95	4882	635	4	0	2	0	0	logfile
✔	9LYB	63525	2025-04-28	2025-02-19	3.16	2.28	3.00	2.2	0.003	0.60	0.0	0.04	12.56	0.00	2.109	9.11	0.00	2.8	97.2	0.0	0.50	0.72	0.72	1.95	2.0	0.002	0.58	0.0	0.04	15.66	0.00	2.584	5.97	2.35	2.5	97.4	0.1	1.44	1.25	0.79	0.79	2.09	8003	1037	5	0	0	0	0	logfile
✔	9LYC	63523	2025-04-30	2025-02-19	3.06	2.38	3.19	2.1	0.004	0.68	0.0	0.04	15.52	0.01	2.034	12.59	0.75	3.8	96.2	0.0	0.99	0.73	0.74	1.64	2.1	0.003	0.67	0.0	0.04	16.86	0.00	2.453	9.11	3.84	4.1	95.9	0.0	1.11	0.66	0.75	0.78	1.70	10056	1312	6	0	0	0	0	logfile
✔	9LYD	63522	2025-04-27	2025-02-19	3.66	2.79	3.59	2.8	0.004	0.81	0.0	0.04	16.60	0.01	2.188	12.83	0.17	4.0	96.0	0.0	1.24	0.72	0.74	0.54	2.8	0.003	0.78	0.0	0.04	17.14	0.00	2.507	10.49	4.29	4.2	95.6	0.1	1.40	0.41	0.72	0.74	0.75	5636	746	2	0	0	0	0	logfile
✔	9LX5	63466	2025-04-28	2025-02-17	3.6	3.83	3.56	3.8	0.004	0.59	0.0	0.05	17.83	0.00	2.230	7.68	4.22	11.4	88.6	0.0	-1.51	0.66	0.80	1.94	3.8	0.003	0.64	0.0	0.05	18.03	0.00	2.215	6.79	7.89	11.0	89.0	0.0	-1.73	0.25	0.66	0.80	2.14	7519	981	6	0	6	0	0	logfile
✔	9iAH	52781	2025-04-26	2025-02-10	3.17	3.15	2.12	3.2	0.008	0.78	0.0	0.05	11.66	0.00	2.501	1.54	0.00	0.0	100.0	0.0	-1.94	0.50	0.87	5.54	3.2	0.003	0.54	0.0	0.04	14.08	0.00	2.633	4.25	1.48	3.1	96.9	0.0	-2.61	0.33	0.46	0.84	5.54	1260	170	5	0	0	0	0	logfile
✔	9LU9	63392	2025-04-30	2025-02-08	3.3	3.70	3.51	3.7	0.009	1.43	3.0	0.15	19.98	0.03	2.265	8.31	11.48	1.7	98.3	0.0	-0.36	0.66	0.88	2.21	3.7	0.003	0.59	0.0	0.04	17.61	0.00	2.449	5.47	2.30	1.7	98.3	0.0	3.59	0.81	0.59	0.82	1.72	9858	1281	8	0	1	0	0	logfile
✔	9LUB	63393	2025-04-30	2025-02-08	3.3	3.69	3.45	3.7	0.009	1.41	3.0	0.09	17.48	0.03	2.121	9.42	10.75	2.1	97.9	0.0	-0.89	0.67	0.89	2.09	3.7	0.003	0.61	0.0	0.04	16.91	0.00	2.570	5.44	2.69	1.4	98.6	0.0	3.47	1.44	0.66	0.86	1.64	10113	1326	7	0	0	0	0	logfile
✔	9LUC	63394	2025-04-30	2025-02-08	3.5	3.84	3.62	3.9	0.010	1.49	2.0	0.09	17.83	0.03	2.239	8.46	11.92	2.6	97.3	0.1	-1.36	0.67	0.89	2.13	3.9	0.003	0.62	0.0	0.04	17.69	0.00	2.514	5.33	2.81	1.6	98.3	0.1	3.17	0.81	0.64	0.85	1.22	9584	1249	7	0	0	0	0	logfile
✔	9LSK	63358	2025-04-27	2025-02-04	2.9	3.78	3.03	3.6	0.004	0.68	1.0	0.05	11.95	0.00	2.185	9.35	0.31	2.1	97.9	0.0	1.52	0.69	0.88	2.76	3.6	0.003	0.61	0.0	0.04	14.36	0.00	2.616	7.60	2.14	2.2	97.8	0.0	2.15	0.39	0.66	0.87	1.68	6422	858	4	0	3	0	0	logfile
✔	9N49	48871	2025-04-27	2025-02-02	3.0	3.90	3.06	5.2	0.007	1.16	0.0	0.07	14.03	0.01	2.368	6.09	0.17	4.2	95.8	0.0	1.06	0.31	0.26	0.66	3.5	0.006	1.10	0.0	0.05	17.04	0.01	2.339	14.97	3.45	4.5	95.5	0.0	0.86	2.13	0.45	0.79	1.28	6509	925	6	0	0	0	0	logfile
✘	9i65	52650	2025-04-29	2025-01-29	4.1	4.36	3.98	4.4	0.003	0.66	0.0	0.05	11.38	0.00	2.162	11.35	0.00	11.3	88.2	0.5	-1.25	0.69	0.75	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8433	1215	9	0	0	0	0	logfile
✔	9LoN	63250	2025-04-26	2025-01-23	3.0	2.99	2.19	3.1	0.009	0.65	0.0	0.05	13.10	0.00	2.359	2.29	0.00	4.7	95.3	0.0	-3.50	0.45	0.92	6.73	3.1	0.003	0.44	0.0	0.05	14.94	0.00	2.626	0.88	0.69	2.6	97.4	0.0	-1.37	0.90	0.44	0.92	6.58	2772	396	6	0	0	0	0	logfile
✔	9MX3	48708	2025-04-27	2025-01-17	3.0	3.93	3.03	3.5	0.003	0.63	0.0	0.04	17.07	0.00	2.208	6.38	1.68	3.8	96.2	0.0	1.64	0.86	0.83	1.60	3.5	0.002	0.60	0.0	0.04	17.24	0.00	2.242	5.00	2.52	3.9	96.1	0.0	2.14	0.33	0.86	0.82	1.24	5929	641	4	33	1	0	0	logfile
✔	9MW8	48697	2025-04-27	2025-01-17	3.3	4.53	3.31	4.0	0.002	0.63	0.0	0.04	18.27	0.00	2.077	13.98	1.33	3.3	96.6	0.2	1.50	0.85	0.75	0.46	4.0	0.002	0.64	0.0	0.04	18.43	0.00	2.491	9.78	1.83	2.8	96.9	0.3	1.69	1.30	0.85	0.76	0.43	6419	647	4	54	2	0	0	logfile
✔	9MX5	48710	2025-04-27	2025-01-17	3.1	3.96	3.22	3.7	0.003	0.56	0.0	0.04	18.21	0.00	2.169	8.83	1.32	4.2	95.7	0.2	2.06	0.84	0.85	1.94	3.7	0.005	0.72	0.0	0.04	18.22	0.00	2.396	7.95	1.49	4.9	94.9	0.2	1.74	0.99	0.84	0.86	1.68	6463	652	4	54	3	0	0	logfile
✔	9MW7	48691	2025-04-27	2025-01-16	3.4	4.43	3.48	3.9	0.008	0.62	0.0	0.04	18.41	0.00	2.138	15.61	1.01	9.2	90.6	0.2	-1.07	0.83	0.66	0.86	3.9	0.003	0.66	0.0	0.04	18.77	0.00	1.895	13.33	1.22	9.2	90.4	0.4	-1.39	1.00	0.84	0.67	1.05	5504	535	4	54	2	0	0	logfile

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