Table showing results for April 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9Ei2	48074	2025-04-26	2024-11-25	2.8	2.23	3.03	1.9	0.004	0.58	0.0	0.04	19.85	0.00	2.155	11.31	4.96	7.6	91.6	0.8	-0.10	0.54	0.77	2.52	1.9	0.004	0.59	0.0	0.04	19.62	0.00	2.585	8.77	4.96	6.8	92.4	0.8	0.11	0.25	0.54	0.79	2.38	2182	267	2	0	0	0	0	logfile
✔	9KQE	62501	2025-04-26	2024-11-25	3.0	3.27	3.03	3.2	0.008	0.87	0.0	0.05	13.46	0.01	2.237	9.43	1.68	3.3	96.7	0.0	-2.23	0.53	0.78	2.13	3.2	0.004	0.81	0.0	0.04	16.83	0.00	2.579	11.17	2.35	1.4	98.6	0.0	1.57	1.48	0.55	0.80	1.15	2795	373	2	0	1	0	0	logfile
✔	9KQF	62503	2025-04-28	2024-11-25	3.25	3.45	3.34	3.5	0.005	0.62	0.0	0.04	26.74	0.00	2.176	11.57	0.29	4.0	96.0	0.0	0.73	0.55	0.80	3.54	3.5	0.003	0.55	0.0	0.04	20.71	0.00	2.536	8.99	5.16	2.9	97.1	0.0	2.95	1.11	0.54	0.79	3.20	7066	754	4	0	20	0	0	logfile
✔	9KQA	62498	2025-04-26	2024-11-25	3.28	3.78	3.25	3.7	0.005	0.79	0.0	0.04	17.32	0.01	2.211	11.22	0.35	5.7	94.3	0.0	-2.72	0.46	0.72	1.02	3.7	0.003	0.71	0.0	0.04	17.55	0.00	2.510	6.23	2.80	3.2	96.8	0.0	1.60	0.55	0.47	0.73	0.81	2783	377	2	0	1	0	0	logfile
✔	9KPF	62486	2025-04-29	2024-11-22	3.15	2.28	3.24	2.1	0.003	0.64	0.0	0.04	16.07	0.00	2.208	9.92	0.10	4.6	95.4	0.0	0.89	0.76	0.74	2.42	2.1	0.003	0.63	0.0	0.04	16.91	0.00	2.465	5.86	4.39	4.3	95.7	0.0	0.94	0.33	0.75	0.74	2.25	8914	1127	6	0	1	0	0	logfile
✔	9KPE	62485	2025-04-29	2024-11-22	3.35	2.36	3.59	2.1	0.004	0.76	0.0	0.05	15.54	0.00	2.151	20.23	0.00	5.9	94.1	0.0	-0.21	0.72	0.71	2.13	2.1	0.004	0.70	0.0	0.05	16.34	0.00	2.464	14.76	4.29	5.6	94.4	0.0	0.09	1.50	0.72	0.71	2.04	8916	1127	6	0	1	0	0	logfile
✔	9HHQ	52173	2025-04-26	2024-11-22	3.5	4.08	3.44	3.9	0.003	0.72	0.0	0.05	14.16	0.01	2.283	7.67	0.00	3.3	96.7	0.0	-0.94	0.54	0.75	1.70	3.9	0.005	0.90	0.0	0.05	17.14	0.01	2.473	18.64	3.62	4.4	95.6	0.0	-0.24	2.25	0.56	0.77	0.64	2818	369	1	0	0	0	0	logfile
✔	9KPD	62484	2025-04-29	2024-11-22	2.84	2.22	3.01	2.0	0.012	1.09	3.0	0.08	16.05	0.01	2.003	26.15	2.56	4.3	95.2	0.5	0.01	0.75	0.75	2.97	2.0	0.005	0.66	0.0	0.04	16.63	0.00	2.539	10.24	2.89	3.4	96.5	0.1	0.67	0.46	0.77	0.78	2.84	8237	1035	6	0	1	0	0	logfile
✔	9HGR	52165	2025-04-26	2024-11-20	2.7	2.06	2.31	2.7	0.003	0.47	0.0	0.05	14.29	0.00	2.569	2.04	0.00	3.0	97.0	0.0	-3.44	0.27	0.76	6.46	2.7	0.004	0.52	0.0	0.05	16.15	0.00	2.627	0.51	5.32	8.2	91.8	0.0	-3.74	0.41	0.27	0.77	6.92	960	142	2	0	0	0	0	logfile
✔	9HGS	52166	2025-04-26	2024-11-20	3.0	2.93	2.85	3.2	0.010	0.99	0.0	0.08	18.25	0.01	2.341	0.92	1.89	11.3	88.7	0.0	-4.52	0.26	0.73	2.80	3.2	0.002	0.45	0.0	0.05	18.09	0.00	2.666	1.85	3.77	9.9	90.1	0.0	-4.19	0.48	0.26	0.76	4.30	526	75	1	0	0	0	0	logfile
✔	9KoM	62478	2025-04-26	2024-11-20	3.2	3.48	3.34	3.5	0.004	0.79	0.0	0.04	17.93	0.00	2.245	6.15	0.81	4.6	95.4	0.0	0.32	0.26	0.66	1.35	3.5	0.003	0.56	0.0	0.04	18.53	0.00	2.623	4.61	5.24	2.5	97.5	0.0	1.67	1.24	0.40	0.83	0.94	2268	291	1	0	0	0	0	logfile
✔	9HH1	52168	2025-04-26	2024-11-20	3.9	4.10	1.62	4.0	0.015	1.45	0.0	0.08	10.77	0.01	1.889	13.25	0.56	2.5	97.5	0.0	-1.27	0.59	0.43	1.23	4.0	0.003	0.86	0.0	0.05	15.53	0.00	2.455	17.37	4.17	2.9	97.1	0.0	-0.56	2.34	0.69	0.63	1.54	3300	412	2	0	0	0	0	logfile
✔	9KNW	62464	2025-04-26	2024-11-19	3.41	3.70	3.47	3.7	0.009	0.93	0.0	0.04	19.17	0.00	2.299	14.27	1.48	2.1	97.9	0.0	-1.35	0.53	0.77	1.61	3.8	0.004	1.40	1.0	0.05	17.67	0.00	2.417	9.93	3.70	1.2	98.8	0.0	1.77	0.97	0.51	0.77	1.62	2747	333	5	0	2	0	0	logfile
✔	9KNY	62466	2025-04-26	2024-11-19	3.4	3.70	3.34	3.7	0.009	0.93	0.0	0.04	19.44	0.00	2.299	12.28	4.44	2.1	97.9	0.0	-1.33	0.53	0.77	1.61	3.7	0.004	1.37	0.0	0.04	17.98	0.00	2.294	9.39	5.19	1.2	98.8	0.0	1.62	0.77	0.51	0.77	1.24	2747	333	5	0	2	0	0	logfile
✔	9EF0	40857	2025-04-27	2024-11-19	3.33	3.49	3.32	3.5	0.004	0.59	0.0	0.04	16.92	0.00	2.198	10.63	0.96	3.6	96.4	0.0	-0.60	0.70	0.79	1.99	3.5	0.004	0.67	0.0	0.04	17.98	0.00	2.485	10.63	3.25	5.4	94.6	0.0	-0.64	0.83	0.70	0.80	2.41	4993	613	2	0	2	0	0	logfile
✔	9KNX	62465	2025-04-26	2024-11-19	3.72	4.01	3.77	4.0	0.011	1.06	0.0	0.06	16.42	0.01	2.250	9.84	0.38	3.7	96.3	0.0	-1.45	0.48	0.70	1.20	4.0	0.003	0.55	0.0	0.04	16.50	0.00	2.474	8.17	2.26	1.9	98.1	0.0	2.30	0.73	0.46	0.72	0.65	2675	329	4	0	1	0	0	logfile
✔	9EDC	47944	2025-04-27	2024-11-16	4.18	5.14	4.40	5.9	0.005	0.88	0.0	0.05	13.87	0.01	2.263	2.91	0.00	2.5	97.3	0.2	-1.43	0.70	0.54	—	5.8	0.004	0.78	0.0	0.05	14.00	0.00	2.372	16.09	0.24	4.5	95.3	0.2	-0.23	1.81	0.73	0.61	—	4062	498	3	0	1	0	0	logfile
✔	9KJU	62377	2025-04-28	2024-11-12	2.7	2.86	2.87	2.8	0.008	1.06	0.0	0.06	15.87	0.01	2.298	3.90	0.51	8.5	91.0	0.5	-3.15	0.57	0.64	1.90	2.8	0.003	0.71	0.0	0.04	14.95	0.00	2.498	5.92	1.79	7.8	92.1	0.1	1.08	0.68	0.68	0.88	1.58	7398	936	8	0	8	1	0	logfile
✔	9EAJ	47833	2025-04-27	2024-11-11	3.2	3.44	3.19	3.4	0.004	0.51	0.0	0.04	12.00	0.00	2.136	7.55	1.78	4.2	95.8	0.0	0.76	0.56	0.81	3.46	3.4	0.003	0.55	0.0	0.04	14.28	0.00	2.560	7.55	2.67	3.3	96.7	0.0	1.23	0.89	0.60	0.82	2.94	5246	662	4	0	0	0	0	logfile
✔	9EAH	47831	2025-04-27	2024-11-11	3.1	3.37	3.11	3.3	0.002	0.45	0.0	0.04	10.95	0.00	2.254	5.72	0.68	3.6	96.4	0.0	-0.11	0.55	0.82	4.02	3.3	0.003	0.50	0.0	0.04	13.40	0.00	2.591	5.45	1.19	4.4	95.6	0.0	1.09	0.87	0.55	0.82	3.18	5606	702	5	0	2	0	0	logfile

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