Table showing results for April 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9EAH	47831	2025-04-27	2024-11-11	3.1	3.37	3.11	3.3	0.002	0.45	0.0	0.04	10.95	0.00	2.254	5.72	0.68	3.6	96.4	0.0	-0.11	0.55	0.82	4.02	3.3	0.003	0.50	0.0	0.04	13.40	0.00	2.591	5.45	1.19	4.4	95.6	0.0	1.09	0.87	0.55	0.82	3.18	5606	702	5	0	2	0	0	logfile
✔	9KH5	62332	2025-04-26	2024-11-09	3.74	4.67	2.98	4.3	0.008	0.98	0.0	0.04	17.15	0.01	2.202	28.14	8.97	13.0	87.0	0.0	-4.34	0.48	0.79	0.82	4.3	0.004	0.90	0.0	0.05	16.56	0.01	2.477	16.24	4.75	7.3	92.7	0.0	-0.05	2.17	0.48	0.81	0.82	3526	455	1	0	0	0	0	logfile
✘	9HBR	52027	2025-04-27	2024-11-08	2.9	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	5236	625	5	22	0	0	0	logfile
✘	9HBV	52031	2025-04-27	2024-11-08	3.38	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	5405	629	5	30	0	0	0	logfile
✘	9HBY	52034	2025-04-28	2024-11-08	3.1	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7976	951	7	35	0	0	0	logfile
✘	9HBX	52033	2025-04-27	2024-11-08	3.04	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	5261	630	5	22	0	0	0	logfile
✘	9HBU	52030	2025-04-27	2024-11-08	3.51	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	5530	629	4	37	0	0	0	logfile
✔	9HBB	52014	2025-04-28	2024-11-06	3.0	3.19	2.92	3.2	0.011	1.88	0.0	0.09	10.83	0.01	2.495	0.28	0.00	7.2	92.8	0.0	-1.24	0.42	0.82	6.08	3.2	0.003	0.55	0.0	0.05	15.44	0.00	2.470	1.41	1.52	3.2	96.8	0.0	-1.56	1.40	0.43	0.85	4.86	7074	456	6	0	0	0	3606	logfile
✔	9E82	47700	2025-04-29	2024-11-04	3.4	3.55	3.27	3.5	0.003	0.53	1.0	0.04	9.81	0.00	2.068	10.34	3.04	7.2	92.8	0.0	-0.53	0.57	0.63	1.07	3.5	0.004	0.80	0.0	0.05	13.72	0.01	2.323	13.32	4.45	5.4	94.6	0.0	-0.50	1.38	0.58	0.64	1.07	8200	1034	6	0	1	0	0	logfile
✔	9KBF	62223	2025-04-27	2024-10-30	3.74	3.96	3.77	3.9	0.004	0.64	0.0	0.05	14.54	0.00	2.199	6.95	0.20	7.4	92.6	0.0	-1.16	0.71	0.80	1.76	3.9	0.004	0.63	0.0	0.04	16.71	0.00	2.469	13.12	1.96	5.3	94.7	0.0	0.01	0.76	0.72	0.81	1.53	4587	569	2	0	0	0	0	logfile
✔	9E6H	47565	2025-04-28	2024-10-30	2.84	3.49	2.79	3.2	0.014	0.99	0.0	0.05	19.32	0.00	2.087	3.06	0.00	1.6	98.4	0.0	0.47	0.80	0.77	4.47	3.2	0.004	0.87	0.0	0.05	14.65	0.00	2.083	4.85	0.36	2.1	97.9	0.0	0.69	1.07	0.83	0.86	5.43	8106	978	16	0	52	0	0	logfile
✔	9H76	51912	2025-04-27	2024-10-26	2.9	3.57	2.91	3.4	0.005	0.59	0.0	0.04	15.75	0.01	2.053	5.90	0.23	1.7	98.3	0.0	2.14	0.68	0.90	3.66	3.4	0.004	0.64	0.0	0.04	16.50	0.00	2.475	6.85	2.96	2.0	98.0	0.0	2.07	0.60	0.64	0.87	3.27	4157	547	3	0	0	0	0	logfile
✔	9K7N	62150	2025-04-27	2024-10-24	3.3	3.61	3.28	3.6	0.007	1.23	1.0	0.09	12.28	0.01	2.115	9.25	1.08	1.8	98.2	0.0	2.30	0.48	0.74	1.88	3.6	0.003	0.62	0.0	0.04	15.73	0.00	2.572	8.44	2.80	1.8	98.2	0.0	1.75	0.99	0.53	0.81	0.88	4332	545	2	0	2	0	0	logfile
✔	9K7B	62147	2025-04-27	2024-10-23	2.75	2.95	2.74	3.0	0.013	1.40	0.0	0.10	14.68	0.01	1.784	20.92	1.71	1.1	98.9	0.0	1.92	0.43	0.67	3.19	3.0	0.003	0.61	0.0	0.04	14.43	0.00	2.341	8.48	0.86	2.8	97.2	0.0	1.60	0.93	0.60	0.86	3.05	4522	544	2	0	11	19	0	logfile
✔	9H5J	51886	2025-04-26	2024-10-22	2.72	2.79	2.74	2.9	0.012	1.96	0.0	0.08	11.32	0.02	2.556	0.00	0.00	6.2	92.1	1.7	-2.25	0.43	0.87	6.55	2.9	0.003	0.75	0.0	0.05	17.33	0.01	2.599	4.32	3.70	6.2	93.8	0.0	-2.96	0.83	0.45	0.91	4.94	3300	432	6	0	0	0	0	logfile
✔	9K6L	62129	2025-04-29	2024-10-22	2.77	2.29	2.78	2.1	0.004	0.77	0.0	0.05	16.44	0.01	2.090	16.17	0.31	3.3	96.7	0.0	0.62	0.73	0.75	2.26	2.0	0.003	0.65	0.0	0.04	17.41	0.00	2.470	12.17	4.18	2.9	97.1	0.0	0.57	0.41	0.77	0.78	2.25	8914	1127	6	0	1	0	0	logfile
✔	9H5G	51884	2025-04-26	2024-10-22	2.48	2.59	2.46	2.7	0.012	1.99	0.0	0.09	10.88	0.01	2.550	0.00	0.00	6.0	94.0	0.0	-1.90	0.44	0.85	6.35	2.6	0.004	0.82	0.0	0.05	16.80	0.00	2.606	2.08	4.23	6.2	93.8	0.0	-2.64	0.66	0.45	0.89	3.87	3300	432	6	0	0	0	0	logfile
✔	9E1T	47420	2025-04-30	2024-10-21	3.0	3.15	3.04	3.1	0.002	0.38	0.0	0.04	10.62	0.00	2.108	5.74	0.00	2.7	97.3	0.0	0.55	0.72	0.79	3.41	3.1	0.003	0.62	0.0	0.04	15.81	0.00	2.099	8.75	1.11	4.4	95.6	0.0	0.26	2.75	0.74	0.80	3.16	10032	1204	4	2	2	0	0	logfile
✔	9K24	61989	2025-04-26	2024-10-17	3.6	2.93	2.70	4.0	0.002	0.59	0.0	0.05	17.48	0.00	2.503	11.79	0.00	12.9	87.1	0.0	-2.81	0.34	0.65	4.11	3.7	0.005	0.88	0.0	0.05	18.56	0.00	2.591	11.79	2.90	17.5	82.5	0.0	-3.68	1.18	0.36	0.72	3.65	2682	384	6	0	0	0	0	logfile
✔	9K27	61992	2025-04-30	2024-10-17	2.68	3.81	3.15	3.6	0.004	0.68	0.0	0.04	13.89	0.00	1.835	9.30	0.10	6.3	93.7	0.0	-0.54	0.75	0.86	2.98	3.6	0.003	0.75	0.0	0.04	16.38	0.00	2.488	7.23	1.69	5.4	94.6	0.0	0.21	1.50	0.67	0.81	2.74	9213	1167	7	0	1	0	0	logfile

• ← previous
• Page 5 of 244
• next →