Table showing results for April 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9K23	61988	2025-04-26	2024-10-17	2.6	2.16	2.06	3.0	0.005	0.56	0.0	0.05	13.00	0.00	2.225	5.47	0.00	4.7	95.3	0.0	-3.85	0.43	0.88	6.96	3.0	0.006	0.60	0.0	0.05	17.74	0.00	2.583	3.35	4.17	6.2	93.8	0.0	-2.92	0.37	0.44	0.88	6.72	2772	396	6	0	0	0	0	logfile
✔	9K24	61989	2025-04-26	2024-10-17	3.6	2.93	2.70	4.0	0.002	0.59	0.0	0.05	17.48	0.00	2.503	11.79	0.00	12.9	87.1	0.0	-2.81	0.34	0.65	4.11	3.7	0.005	0.88	0.0	0.05	18.56	0.00	2.591	11.79	2.90	17.5	82.5	0.0	-3.68	1.18	0.36	0.72	3.65	2682	384	6	0	0	0	0	logfile
✔	9K1C	61971	2025-04-27	2024-10-16	3.2	3.44	3.16	3.5	0.002	0.92	0.0	0.04	13.74	0.00	2.213	5.89	0.00	2.2	97.8	0.0	2.36	0.64	0.76	2.57	3.5	0.003	0.58	0.0	0.04	15.39	0.00	2.384	6.34	1.33	2.7	97.3	0.0	1.66	0.39	0.59	0.78	2.40	6611	871	5	0	1	0	0	logfile
✔	9K1D	61972	2025-04-28	2024-10-16	3.34	3.51	3.17	3.5	0.020	0.72	0.0	0.07	16.97	0.00	2.183	12.57	0.27	2.5	97.5	0.0	0.87	0.69	0.81	0.92	3.5	0.004	0.65	0.0	0.04	16.81	0.00	2.412	7.07	3.41	2.7	97.3	0.0	0.80	0.38	0.71	0.85	1.31	6892	858	5	0	6	0	0	logfile
✔	9DZ2	47323	2025-04-30	2024-10-15	3.31	3.93	3.33	3.7	0.004	0.74	0.0	0.05	14.55	0.01	2.174	10.10	0.49	6.3	93.2	0.6	-2.10	0.78	0.73	3.18	3.8	0.003	0.69	0.0	0.04	15.43	0.00	2.346	6.15	2.14	6.7	92.7	0.6	-1.60	0.74	0.76	0.79	2.97	9523	1207	8	0	0	0	0	logfile
✔	9JVG	61838	2025-04-29	2024-10-09	2.76	3.38	2.79	3.2	0.008	0.79	2.0	0.05	12.56	0.00	1.644	10.65	0.38	5.6	94.4	0.0	-0.72	0.69	0.75	2.63	3.2	0.003	0.67	0.0	0.04	15.99	0.00	2.444	8.35	2.64	2.8	97.2	0.0	0.27	0.61	0.67	0.76	2.50	8396	1151	5	0	0	0	0	logfile
✔	9DWN	47258	2025-04-27	2024-10-09	3.2	2.91	3.15	3.3	0.004	0.63	0.0	0.04	14.43	0.00	2.165	6.64	0.45	2.6	97.4	0.0	2.60	0.56	0.80	3.93	3.3	0.003	0.50	0.0	0.04	14.66	0.00	2.522	6.52	1.57	2.4	97.6	0.0	4.12	0.26	0.54	0.82	3.73	4325	540	6	0	9	2	0	logfile
✔	9JVM	61840	2025-04-26	2024-10-09	2.36	2.47	2.27	3.0	0.009	1.11	0.0	0.05	12.65	0.01	2.211	12.67	0.00	11.2	88.4	0.4	-1.75	0.65	0.61	4.04	3.1	0.004	0.85	0.0	0.04	14.34	0.01	2.647	5.76	0.00	5.0	95.0	0.0	1.44	0.90	0.65	0.62	2.37	1800	267	1	0	0	0	0	logfile
✔	9JVH	61839	2025-04-26	2024-10-09	2.76	2.39	2.77	2.8	0.005	0.81	1.0	0.05	12.93	0.00	2.375	8.50	0.00	8.9	91.1	0.0	-1.37	0.71	0.73	4.42	2.9	0.003	0.62	0.0	0.04	15.28	0.00	2.620	5.43	1.94	4.5	95.5	0.0	0.50	0.50	0.73	0.75	2.28	2180	294	1	0	0	0	0	logfile
✔	9JUK	61828	2025-04-30	2024-10-08	3.3	2.84	3.64	3.3	0.004	0.64	0.0	0.04	16.73	0.01	2.036	14.03	0.11	4.9	95.1	0.0	0.83	0.54	0.70	1.78	3.3	0.003	0.59	0.0	0.04	16.99	0.00	2.004	11.61	2.32	5.4	94.6	0.0	1.09	0.41	0.54	0.72	1.72	9035	1165	2	0	4	0	0	logfile
✔	9JUN	61831	2025-04-29	2024-10-08	3.4	3.25	3.71	3.4	0.003	0.57	0.0	0.04	14.49	0.00	2.212	11.17	0.00	5.8	94.2	0.0	1.31	0.56	0.74	1.09	3.3	0.003	0.63	0.0	0.04	16.63	0.00	2.516	10.23	1.69	5.4	94.6	0.0	1.18	0.77	0.62	0.81	1.74	8971	1165	1	0	0	0	0	logfile
✘	9JUL	61829	2025-04-29	2024-10-08	3.1	3.11	3.25	3.2	0.005	0.76	0.0	0.05	14.49	0.01	2.238	12.44	0.74	5.3	94.7	0.0	0.64	0.65	0.81	2.08	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9005	1165	2	0	1	0	0	logfile
✔	9JUo	61832	2025-04-29	2024-10-08	3.1	2.82	3.07	3.2	0.005	0.70	0.0	0.05	16.18	0.00	2.047	13.24	0.43	5.3	94.7	0.0	0.76	0.65	0.81	1.94	3.2	0.003	0.62	0.0	0.04	16.32	0.00	1.972	8.81	2.26	4.7	95.3	0.0	1.40	0.43	0.67	0.83	1.77	8858	1144	2	0	4	0	0	logfile
✔	9JUM	61830	2025-04-30	2024-10-08	3.1	3.55	3.61	3.4	0.005	0.76	0.0	0.05	15.66	0.01	1.922	15.77	0.00	4.1	95.9	0.0	0.83	0.70	0.83	1.75	3.4	0.003	0.69	0.0	0.04	16.09	0.00	2.010	13.04	1.69	4.7	95.3	0.0	1.70	0.48	0.71	0.85	1.60	9069	1165	2	0	5	0	0	logfile
✔	9JUJ	61827	2025-04-29	2024-10-08	3.4	3.22	3.39	3.5	0.005	0.76	0.0	0.05	14.45	0.00	2.215	14.60	0.21	4.7	95.3	0.0	0.13	0.52	0.66	0.35	3.4	0.004	0.68	0.0	0.04	17.15	0.00	2.497	12.83	2.21	5.1	94.9	0.0	0.54	1.29	0.57	0.75	1.20	8971	1165	1	0	0	0	0	logfile
✔	9JUP	61833	2025-04-29	2024-10-08	3.1	2.60	3.37	3.0	0.004	0.57	0.0	0.04	16.34	0.00	1.964	8.84	0.00	4.0	96.0	0.0	1.64	0.56	0.76	2.56	3.0	0.004	0.61	0.0	0.04	16.97	0.00	1.913	9.70	3.41	4.6	95.3	0.1	1.27	0.37	0.59	0.80	2.51	8656	1118	2	0	4	0	0	logfile
✔	9DW5	47236	2025-04-30	2024-10-08	3.8	4.25	3.96	4.1	0.005	0.76	0.0	0.04	14.41	0.00	2.012	6.90	2.49	2.8	97.2	0.1	0.83	0.63	0.78	1.61	4.1	0.003	0.67	0.0	0.04	14.81	0.00	1.963	7.74	4.53	3.7	96.3	0.0	0.92	0.74	0.62	0.78	1.27	9748	1464	3	0	3	0	0	logfile
✔	9JUB	61826	2025-04-27	2024-10-07	3.1	3.29	3.10	3.3	0.022	1.26	1.0	0.06	11.95	0.01	1.934	17.05	0.56	7.6	92.3	0.1	-1.75	0.55	0.67	3.19	3.3	0.004	0.72	0.0	0.05	13.92	0.00	2.506	6.86	1.81	5.6	94.4	0.0	-1.14	0.58	0.62	0.75	2.89	6479	829	5	0	5	0	0	logfile
✔	9GZY	51737	2025-04-26	2024-10-04	3.0	3.12	2.93	3.1	0.008	0.80	0.0	0.05	11.92	0.00	2.446	7.26	0.00	0.0	100.0	0.0	-2.35	0.51	0.81	6.20	3.1	0.061	0.69	0.0	0.05	13.61	0.00	2.430	1.89	0.26	0.3	99.7	0.0	-3.64	0.62	0.45	0.85	6.12	3276	444	36	0	12	0	0	logfile
✔	9GZS	51733	2025-04-26	2024-10-04	3.1	3.24	3.07	3.3	0.009	0.83	0.0	0.07	11.05	0.00	2.658	8.18	3.45	0.0	100.0	0.0	-2.04	0.41	0.84	5.31	3.3	0.043	0.66	0.0	0.05	11.52	0.00	1.863	1.74	2.30	2.2	97.8	0.0	-3.94	1.17	0.44	0.86	6.67	3000	402	30	0	12	0	0	logfile

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