Table showing results for April 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9JRK	61758	2025-04-26	2024-09-29	3.44	3.67	3.43	3.6	0.006	0.86	1.0	0.04	16.86	0.00	2.299	8.65	0.00	4.5	95.5	0.0	0.28	0.56	0.79	2.03	3.6	0.003	0.59	1.0	0.04	16.93	0.00	2.570	7.86	3.31	3.4	96.6	0.0	1.43	0.32	0.52	0.77	1.47	3139	386	2	0	1	0	0	logfile
✔	9JR2	61746	2025-04-30	2024-09-29	2.8	2.91	—	98.0	0.003	0.51	0.0	0.04	14.04	0.00	2.142	3.21	0.31	2.8	97.2	0.0	0.54	0.26	0.61	3.01	98.0	0.003	0.57	0.0	0.04	15.81	0.00	2.505	6.79	2.70	3.0	97.0	0.0	1.19	0.65	0.49	0.76	2.58	9418	1225	8	0	1	1	0	logfile
✔	9JR3	61747	2025-04-30	2024-09-29	2.8	2.91	—	98.0	0.003	0.49	0.0	0.04	13.98	0.00	2.136	3.69	0.62	2.3	97.6	0.1	0.36	0.27	0.63	2.72	98.0	0.005	0.66	0.0	0.04	15.67	0.00	2.516	8.08	3.01	3.2	96.7	0.1	0.80	0.90	0.49	0.77	2.26	9455	1228	9	0	3	1	0	logfile
✔	9JRM	61760	2025-04-26	2024-09-29	3.34	3.55	3.32	3.5	0.007	1.01	0.0	0.06	17.94	0.00	2.229	8.23	0.00	4.0	96.0	0.0	0.97	0.59	0.78	2.18	3.5	0.003	0.59	0.0	0.04	16.22	0.00	2.629	9.65	5.15	4.5	95.5	0.0	1.84	0.27	0.54	0.76	1.72	3134	384	2	0	1	0	0	logfile
✔	9JRL	61759	2025-04-26	2024-09-29	3.25	3.45	3.24	3.4	0.005	0.69	0.0	0.04	17.25	0.01	2.251	8.32	1.51	3.7	96.3	0.0	0.55	0.52	0.78	1.41	3.4	0.003	0.53	0.0	0.04	17.43	0.00	2.577	8.00	4.22	3.2	96.8	0.0	2.09	0.34	0.51	0.79	1.35	3145	386	2	0	1	0	0	logfile
✔	9GXA	51645	2025-04-30	2024-09-29	4.01	4.77	4.07	4.0	0.004	0.65	0.0	0.04	29.32	0.00	1.931	15.93	0.00	1.6	98.4	0.0	1.51	0.85	0.76	—	4.0	0.005	0.73	0.0	0.04	30.23	0.00	2.333	16.41	0.00	2.3	97.7	0.0	1.32	1.56	0.88	0.85	—	9215	574	10	224	0	0	0	logfile
✔	9DSo	47148	2025-04-29	2024-09-28	2.85	3.10	2.88	3.2	0.004	0.54	0.0	0.04	13.12	0.00	2.209	6.26	0.00	1.5	98.5	0.0	1.43	0.63	0.83	3.69	3.2	0.005	0.56	0.0	0.04	15.98	0.00	2.312	6.04	2.07	1.7	98.3	0.0	1.85	0.90	0.63	0.84	3.59	8975	1115	4	0	1	0	0	logfile
✔	9JQT	61741	2025-04-27	2024-09-28	2.7	3.06	2.80	3.1	0.005	0.72	0.0	0.05	13.51	0.01	2.209	8.55	0.31	2.0	98.0	0.0	0.51	0.41	0.62	3.55	3.1	0.003	0.54	0.0	0.04	15.19	0.00	2.618	6.84	2.83	1.8	98.2	0.0	0.55	0.33	0.54	0.79	3.25	5669	720	4	0	0	0	0	logfile
✔	9GVK	51637	2025-04-30	2024-09-25	3.5	3.08	3.16	3.2	0.004	0.71	0.0	0.05	18.62	0.00	2.026	8.11	0.39	5.7	94.3	0.0	-0.64	0.72	0.83	1.37	3.2	0.003	0.62	0.0	0.04	18.40	0.00	2.035	7.19	3.00	6.2	93.8	0.0	0.11	1.06	0.71	0.81	1.35	9673	1256	6	0	4	0	0	logfile
✔	9JoZ	61690	2025-04-26	2024-09-25	2.94	3.15	2.95	3.1	0.003	0.51	0.0	0.04	16.76	0.01	2.299	8.62	0.89	3.9	96.1	0.0	1.34	0.56	0.80	2.25	3.1	0.003	0.47	0.0	0.04	16.85	0.00	2.548	7.99	2.38	3.4	96.6	0.0	2.18	0.35	0.55	0.80	1.84	3143	390	1	0	0	0	0	logfile
✘	9JLN	61591	2025-04-27	2024-09-19	2.84	3.29	2.98	3.3	0.004	0.66	0.0	0.04	16.02	0.00	2.219	6.62	0.00	3.1	96.9	0.0	1.28	0.55	0.74	2.82	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4295	521	2	0	9	0	0	logfile
✔	9DNM	47042	2025-04-27	2024-09-17	3.47	2.46	3.46	2.1	0.004	0.63	0.0	0.04	16.43	0.01	2.222	7.96	0.18	4.7	95.3	0.0	-0.32	0.74	0.75	2.76	2.1	0.004	0.64	0.0	0.04	16.36	0.01	2.557	5.37	2.99	6.0	94.0	0.0	0.23	0.32	0.74	0.77	2.76	5235	668	4	0	1	0	0	logfile
✔	9DNG	47040	2025-04-27	2024-09-17	3.52	2.45	3.46	2.0	0.003	0.63	0.0	0.04	16.58	0.00	2.221	7.46	0.35	6.1	93.9	0.0	-0.93	0.71	0.71	2.28	2.0	0.004	0.68	0.0	0.05	17.25	0.00	2.504	7.46	3.50	5.4	94.6	0.0	-0.56	0.35	0.71	0.71	1.99	5252	675	3	0	0	0	0	logfile
✔	9DMY	47020	2025-04-27	2024-09-16	2.8	2.57	2.75	2.5	0.002	0.48	0.0	0.05	13.08	0.00	2.331	10.31	0.00	1.5	98.5	0.0	-3.48	0.44	0.78	3.76	2.5	0.003	0.68	0.0	0.05	18.24	0.00	2.635	13.66	2.56	6.0	94.0	0.0	-4.11	1.35	0.45	0.80	3.42	5550	690	5	0	0	0	0	logfile
✔	9JKQ	61567	2025-04-29	2024-09-16	2.66	2.84	2.68	2.9	0.003	0.53	0.0	0.04	13.25	0.00	2.097	5.82	0.00	2.9	97.1	0.0	0.84	0.67	0.82	3.46	2.9	0.003	0.54	0.0	0.04	15.85	0.00	2.584	4.68	2.08	2.8	97.2	0.0	1.23	0.91	0.67	0.84	2.92	8386	1055	6	0	1	0	0	logfile
✔	9GSJ	51550	2025-04-29	2024-09-16	3.6	3.94	3.69	3.9	0.003	0.73	0.0	0.04	16.58	0.00	2.108	13.67	2.49	6.8	92.7	0.4	0.30	0.62	0.80	0.84	3.8	0.003	0.71	0.0	0.04	17.22	0.00	2.365	9.52	3.94	6.9	92.8	0.3	1.37	0.48	0.62	0.80	0.73	8870	1144	4	0	2	0	0	logfile
✔	9JKB	61550	2025-04-30	2024-09-15	3.93	4.21	3.97	4.1	0.003	0.67	0.0	0.04	15.64	0.01	2.253	7.81	0.19	4.6	95.4	0.0	-0.64	0.78	0.81	0.96	4.1	0.003	0.72	0.0	0.04	17.41	0.00	2.522	13.35	2.47	4.3	95.7	0.0	0.35	1.32	0.79	0.82	1.08	9532	1179	5	0	0	0	0	logfile
✔	9JJi	61528	2025-04-30	2024-09-13	3.4	2.52	3.40	2.2	0.005	0.60	0.0	0.05	12.41	0.00	2.221	4.62	0.00	2.6	97.4	0.0	-0.45	0.60	0.80	3.64	2.1	0.003	0.63	0.0	0.05	14.85	0.00	2.529	4.36	2.49	2.3	97.7	0.0	-0.56	2.00	0.61	0.81	3.20	10021	1332	4	0	0	0	0	logfile
✔	9JJ6	61517	2025-04-27	2024-09-13	2.94	3.09	2.94	3.1	0.007	0.66	0.0	0.04	28.52	0.00	2.241	8.01	0.73	2.2	97.8	0.0	0.54	0.70	0.86	2.93	3.1	0.002	0.54	0.0	0.04	16.84	0.00	2.541	6.55	1.61	2.1	97.9	0.0	1.38	0.79	0.70	0.86	3.25	6314	771	3	0	6	0	0	logfile
✔	9DME	47002	2025-04-26	2024-09-13	3.2	3.04	2.64	3.3	0.035	0.82	0.0	0.07	8.68	0.01	2.273	17.68	0.00	0.0	100.0	0.0	-0.67	0.34	0.70	5.54	3.3	0.062	0.77	0.0	0.07	10.99	0.01	2.381	11.19	0.74	2.1	97.9	0.0	-1.59	1.22	0.33	0.70	5.88	2475	315	45	0	45	0	0	logfile

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