Table showing results for April 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9GRC	51520	2025-04-30	2024-09-11	3.5	4.03	3.54	15.0	0.002	0.66	0.0	0.04	13.80	0.00	2.197	7.46	0.00	3.9	96.1	0.0	-1.19	0.41	0.06	0.59	9.8	0.003	0.75	0.0	0.04	16.15	0.00	2.512	13.54	1.44	6.1	93.9	0.0	-0.95	1.58	0.48	0.19	0.85	9717	1263	6	0	2	0	0	logfile
✔	9JHP	61489	2025-04-29	2024-09-10	3.35	2.39	3.49	2.1	0.003	0.68	0.0	0.04	14.73	0.01	2.204	10.68	0.00	4.0	96.0	0.0	-0.79	0.75	0.74	1.77	2.1	0.003	0.65	0.0	0.04	16.09	0.00	2.385	5.75	3.48	4.2	95.8	0.0	0.11	0.47	0.75	0.75	1.63	8683	1129	5	0	0	0	0	logfile
✔	9GQo	51510	2025-04-28	2024-09-09	3.46	4.74	3.51	3.6	0.003	0.71	0.0	0.04	18.40	0.01	2.090	14.91	0.41	6.2	93.8	0.0	-1.32	0.77	0.70	0.13	3.6	0.003	0.81	0.0	0.04	18.37	0.00	1.979	17.49	3.18	6.1	93.9	0.0	-0.88	0.59	0.82	0.81	0.34	6716	880	2	0	3	0	0	logfile
✔	9JHJ	61484	2025-04-28	2024-09-09	3.2	3.66	3.24	1.8	0.005	0.77	1.0	0.05	13.23	0.00	2.208	8.68	0.15	5.2	94.8	0.0	-0.60	0.89	0.88	2.66	1.5	0.003	0.59	0.0	0.04	14.36	0.00	2.360	6.78	1.65	4.5	95.5	0.0	0.29	0.89	0.89	0.89	2.37	7761	1105	6	0	1	0	0	logfile
✔	9DK8	46946	2025-04-27	2024-09-08	3.3	3.83	3.42	3.8	0.003	0.56	0.0	0.04	14.36	0.00	2.207	9.10	0.00	6.4	93.6	0.0	-0.16	0.61	0.83	2.88	3.8	0.003	0.64	0.0	0.04	17.09	0.01	2.400	7.75	1.49	5.3	94.7	0.0	-0.09	0.42	0.61	0.83	2.18	6678	858	6	0	0	0	0	logfile
✔	9JG0	61446	2025-04-28	2024-09-05	2.91	3.16	2.93	3.2	0.003	0.51	0.0	0.04	14.67	0.00	2.239	8.63	0.13	1.9	98.1	0.0	0.72	0.56	0.64	2.97	3.2	0.005	0.68	0.0	0.04	16.58	0.00	2.589	8.63	4.53	2.1	97.9	0.0	1.12	1.69	0.63	0.79	2.71	7271	950	4	0	0	0	0	logfile
✔	9JFZ	61445	2025-04-28	2024-09-05	2.9	2.20	2.96	2.1	0.003	0.69	1.0	0.04	16.11	0.01	2.203	8.85	0.57	4.4	95.6	0.0	0.21	0.75	0.75	2.61	2.1	0.002	0.58	0.0	0.04	16.82	0.00	2.482	4.27	2.07	3.0	97.0	0.0	0.56	0.44	0.78	0.77	2.76	8198	1049	5	0	0	0	0	logfile
✔	9DiL	46912	2025-04-30	2024-09-05	3.3	3.74	3.09	3.5	0.003	0.52	0.0	0.04	10.16	0.00	2.211	4.20	1.55	3.8	96.2	0.0	2.06	0.69	0.88	2.33	3.5	0.003	0.63	0.0	0.04	13.80	0.00	2.484	4.71	1.26	3.8	96.1	0.1	2.04	0.61	0.68	0.89	2.03	9783	1236	5	0	4	0	0	logfile
✔	9JFV	61441	2025-04-28	2024-09-05	2.67	2.24	2.67	1.8	0.005	0.84	2.0	0.05	16.64	0.00	2.199	16.88	0.83	5.4	94.2	0.4	-0.54	0.67	0.67	1.00	1.8	0.004	0.67	0.0	0.05	17.61	0.00	2.550	12.01	3.99	5.5	94.5	0.0	-0.11	1.26	0.67	0.67	1.58	7035	920	4	0	0	0	0	logfile
✔	9DiG	46905	2025-04-27	2024-09-05	3.22	3.49	3.26	4.0	0.007	0.76	0.0	0.03	25.27	0.00	2.126	19.21	0.00	0.0	0.0	0.0	—	0.83	0.83	—	4.0	0.008	0.77	0.0	0.04	24.78	0.00	2.121	19.04	0.00	0.0	0.0	0.0	—	0.95	0.83	0.85	—	4066	0	4	192	6	0	0	logfile
✔	9JFX	61443	2025-04-28	2024-09-05	2.87	2.19	2.93	2.0	0.005	0.76	0.0	0.05	16.45	0.01	2.245	5.82	1.52	5.0	94.6	0.4	-0.14	0.76	0.77	2.43	2.0	0.003	0.59	0.0	0.04	17.34	0.00	2.526	3.88	4.79	3.1	96.9	0.0	0.73	0.40	0.79	0.79	2.32	8154	1053	5	0	0	0	0	logfile
✔	9Dii	46906	2025-04-27	2024-09-05	4.0	4.29	4.06	4.1	0.008	0.89	0.0	0.04	27.18	0.00	2.190	46.50	0.00	0.0	0.0	0.0	—	0.83	0.84	—	4.1	0.008	0.93	0.0	0.04	26.46	0.01	2.456	30.04	0.00	0.0	0.0	0.0	—	0.93	0.84	0.85	—	3894	0	2	184	0	0	0	logfile
✔	9JFY	61444	2025-04-29	2024-09-05	3.21	3.44	3.23	3.5	0.003	0.46	0.0	0.04	15.56	0.00	2.208	5.40	0.00	1.9	98.1	0.0	1.40	0.58	0.66	1.94	3.5	0.003	0.58	0.0	0.04	16.57	0.00	2.286	5.91	1.91	1.5	98.5	0.0	1.27	0.72	0.64	0.78	1.87	8805	1133	7	0	1	0	0	logfile
✔	9JFW	61442	2025-04-28	2024-09-05	3.13	2.26	3.17	2.1	0.003	0.62	1.0	0.04	16.74	0.00	2.156	10.42	0.48	4.8	95.2	0.0	-0.38	0.75	0.74	2.09	2.0	0.004	0.63	0.0	0.04	17.14	0.00	2.524	9.14	4.09	4.4	95.6	0.0	-0.19	0.49	0.77	0.76	1.91	7990	1037	5	0	0	0	0	logfile
✔	9JF8	61430	2025-04-26	2024-09-04	3.05	3.21	2.98	3.2	0.005	1.05	2.0	0.07	13.51	0.01	1.759	3.98	0.00	8.7	91.3	0.0	-6.51	0.54	0.82	3.74	3.2	0.004	0.76	0.0	0.04	15.88	0.00	2.477	3.36	3.16	9.2	90.8	0.0	-0.48	0.96	0.52	0.82	3.51	3266	395	2	0	1	0	0	logfile
✔	9GNQ	51477	2025-04-30	2024-09-03	2.9	3.52	2.88	3.3	0.011	0.69	0.0	0.05	17.14	0.01	2.084	5.18	0.99	2.8	97.1	0.1	0.45	0.76	0.89	3.67	3.3	0.004	0.65	0.0	0.05	16.00	0.00	1.988	4.64	1.09	2.8	97.2	0.0	1.24	2.02	0.71	0.89	3.46	9309	1166	7	1	4	0	0	logfile
✔	9JDV	61399	2025-04-26	2024-09-01	3.32	3.91	3.55	3.9	0.013	0.71	0.0	0.03	13.99	0.00	2.150	9.73	2.03	2.8	97.2	0.0	-0.41	0.48	0.66	1.14	3.9	0.004	0.74	0.0	0.04	16.35	0.00	2.281	10.48	4.06	2.6	97.4	0.0	1.92	1.08	0.48	0.73	1.28	3311	435	2	0	1	1	0	logfile
✔	9JE0	61403	2025-04-26	2024-09-01	3.23	3.76	3.35	3.9	0.003	0.58	0.0	0.04	14.22	0.00	2.281	4.93	2.61	2.1	97.9	0.0	-0.32	0.44	0.66	1.06	3.8	0.003	0.70	0.0	0.04	15.99	0.00	2.607	8.81	2.03	2.6	97.4	0.0	2.02	0.63	0.44	0.71	1.00	3321	435	2	0	1	1	0	logfile
✔	9JDB	61387	2025-04-27	2024-08-31	2.64	2.91	2.73	2.9	0.008	1.10	0.0	0.04	18.08	0.00	2.250	4.26	1.41	2.0	98.0	0.0	0.01	0.70	0.87	4.46	2.9	0.003	0.66	0.0	0.04	17.75	0.00	2.608	3.80	1.27	1.6	98.4	0.0	0.36	0.20	0.70	0.86	3.95	6592	808	4	0	2	0	0	logfile
✔	9JCV	61377	2025-04-27	2024-08-30	3.41	3.78	3.49	3.7	0.003	0.63	0.0	0.04	13.63	0.00	2.250	10.37	0.00	2.4	97.6	0.0	1.09	0.50	0.73	1.41	3.7	0.003	0.68	0.0	0.04	15.40	0.00	2.618	9.76	0.69	2.0	98.0	0.0	1.15	1.04	0.51	0.74	0.67	4111	512	2	0	4	0	0	logfile

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