Table showing results for May 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	7o85	12761	2021-05-05	2021-04-14	3.3	3.50	—	3.5	0.002	0.49	0.0	0.04	13.51	0.00	1.470	7.40	0.00	3.3	96.7	0.0	-0.25	0.71	0.75	2.90	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	28525	3843	28	0	14	0	0	logfile
✔	7ME0	23786	2021-05-06	2021-04-06	2.48	2.69	2.55	2.6	0.006	0.55	0.0	0.05	14.32	0.00	2.135	5.75	4.96	2.0	98.0	0.0	-0.22	0.82	0.90	5.65	2.6	0.005	0.63	0.0	0.05	15.62	0.00	2.212	6.64	2.73	2.0	98.0	0.0	0.10	2.52	0.83	0.90	5.54	16386	2082	6	0	0	0	0	logfile
✔	7o1Q	12696	2021-05-06	2021-03-30	3.4	3.81	—	3.4	0.007	0.56	0.0	0.05	9.97	0.00	2.129	4.28	0.39	2.7	97.3	0.0	-0.21	0.85	0.81	4.50	3.5	0.004	0.54	0.0	0.05	13.28	0.00	1.987	6.63	0.17	3.6	96.4	0.0	0.27	2.18	0.81	0.81	4.10	32434	2051	7	0	0	0	15921	logfile
✔	7M4R	23665	2021-05-03	2021-03-22	3.65	4.49	—	4.2	0.007	0.85	0.0	0.05	14.71	0.01	2.259	8.94	0.00	14.2	85.6	0.2	-2.94	0.74	0.66	1.90	4.2	0.003	0.69	0.0	0.04	15.90	0.00	2.271	7.65	0.00	7.0	93.0	0.0	-1.06	0.66	0.87	0.83	1.52	5092	639	3	0	0	0	0	logfile
✘	7EFC	31083	2021-05-04	2021-03-21	1.7	1.76	1.83	1.9	0.033	3.25	80.0	0.10	14.95	0.00	0.000	2.92	2.15	2.5	96.6	0.8	-0.84	0.73	0.80	6.33	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20020	2400	20	0	20	780	0	logfile
✘	7EFD	31084	2021-05-04	2021-03-21	1.77	1.79	1.83	1.9	0.034	3.25	60.0	0.10	15.30	0.00	0.000	2.62	2.15	1.7	97.5	0.8	-0.54	0.71	0.78	5.66	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20020	2400	20	0	20	780	0	logfile
✔	7M17	23614	2021-05-04	2021-03-12	3.65	3.90	3.47	3.8	0.010	1.02	0.0	0.05	16.06	0.00	2.234	3.21	0.00	4.3	95.7	0.0	-1.06	0.68	0.80	1.78	3.8	0.004	0.63	0.0	0.04	16.27	0.00	2.148	7.79	0.63	4.4	95.6	0.0	0.83	1.22	0.68	0.80	1.53	16039	1878	12	0	19	0	0	logfile
✔	7M19	23616	2021-05-04	2021-03-12	3.69	3.92	3.50	3.8	0.010	1.03	0.0	0.05	16.06	0.00	2.231	3.80	0.06	3.9	96.1	0.0	-0.78	0.68	0.80	1.98	3.8	0.003	0.63	0.0	0.04	16.33	0.00	2.124	8.41	0.69	4.6	95.4	0.0	0.39	1.22	0.68	0.80	1.64	16039	1878	12	0	19	0	0	logfile
✔	7M0J	23612	2021-05-05	2021-03-11	3.52	3.78	—	3.7	0.013	1.87	1.0	0.10	13.97	0.01	2.528	0.13	1.68	7.4	92.2	0.5	-2.03	0.77	0.78	2.38	3.7	0.004	0.63	0.0	0.04	15.15	0.00	2.116	9.03	0.23	3.7	96.3	0.0	0.07	1.33	0.78	0.80	2.27	22827	2916	3	0	0	0	0	logfile
✘	7M05	23609	2021-05-07	2021-03-10	2.39	2.66	2.49	2.6	0.013	0.97	0.0	0.06	14.86	0.01	2.064	3.55	0.50	6.9	92.3	0.8	-3.01	0.75	0.81	4.52	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	57152	3636	12	0	4	0	28188	logfile
✔	7NTA	12586	2021-05-05	2021-03-09	3.5	3.71	3.63	3.6	0.024	1.28	0.0	0.05	14.11	0.00	2.050	6.96	0.00	4.1	95.9	0.0	-1.38	0.80	0.81	2.51	3.6	0.003	0.75	0.0	0.05	15.14	0.00	2.010	7.37	0.04	4.1	95.9	0.0	-0.61	1.16	0.77	0.81	2.29	26805	3261	34	0	80	89	0	logfile
✘	7NT9	12585	2021-05-05	2021-03-09	3.36	3.62	3.55	3.5	0.024	1.25	0.0	0.05	13.44	0.00	2.229	6.19	0.00	3.8	96.2	0.0	-0.98	0.78	0.81	2.31	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	26952	3261	39	0	87	132	0	logfile
✔	7NTC	12587	2021-05-05	2021-03-09	3.6	4.35	3.76	4.1	0.019	1.04	0.0	0.05	14.36	0.00	2.165	7.48	0.00	6.7	93.2	0.1	-0.97	0.84	0.83	1.67	4.1	0.005	0.74	0.0	0.04	15.66	0.00	2.153	8.31	0.03	5.9	94.0	0.1	-0.69	0.38	0.84	0.83	1.47	30005	3698	33	0	81	0	0	logfile
✔	7LYo	23597	2021-05-05	2021-03-07	3.32	3.53	—	3.5	0.012	1.74	6.0	0.10	12.46	0.02	2.509	0.58	0.47	5.9	93.7	0.4	-0.93	0.76	0.80	3.68	3.5	0.005	0.65	0.0	0.05	14.21	0.00	2.154	6.68	0.27	3.8	96.1	0.1	0.47	0.69	0.80	0.86	2.87	23649	2982	6	0	40	0	0	logfile
✔	7LYP	23598	2021-05-05	2021-03-07	4.05	4.38	—	4.1	0.012	1.72	5.0	0.09	12.77	0.02	1.562	0.95	1.02	6.8	92.4	0.7	-1.35	0.76	0.72	—	4.1	0.003	0.62	0.0	0.04	12.46	0.00	2.085	9.71	0.00	4.8	95.2	0.0	-0.03	0.75	0.83	0.82	—	23506	2985	6	0	28	0	0	logfile
✔	7LYL	23594	2021-05-05	2021-03-07	3.72	4.02	—	3.8	0.012	1.71	4.0	0.09	12.86	0.02	1.986	0.55	0.80	5.3	94.5	0.2	-0.96	0.77	0.76	2.37	3.8	0.003	0.62	0.0	0.04	14.25	0.00	2.180	7.38	0.31	3.5	96.5	0.0	0.41	1.28	0.81	0.84	1.92	23828	3003	6	0	28	0	0	logfile
✔	7LYN	23596	2021-05-05	2021-03-07	3.32	3.52	—	3.5	0.012	1.73	7.0	0.09	12.64	0.02	2.473	0.56	0.59	5.9	93.9	0.2	-1.03	0.76	0.79	3.64	3.5	0.004	0.60	0.0	0.04	14.24	0.00	2.156	5.89	0.08	3.4	96.6	0.0	0.55	0.68	0.80	0.86	2.95	23642	2985	6	0	38	0	0	logfile
✔	7LYK	23593	2021-05-05	2021-03-07	3.65	3.91	—	3.8	0.013	1.71	5.0	0.09	12.50	0.02	2.421	0.58	0.43	5.7	94.0	0.3	-0.96	0.77	0.74	2.88	3.8	0.003	0.58	0.0	0.04	13.87	0.00	2.156	6.35	0.04	3.3	96.7	0.0	0.64	1.24	0.81	0.82	2.10	23444	2983	6	0	25	0	0	logfile
✔	7LYQ	23599	2021-05-05	2021-03-07	3.34	3.59	—	3.6	0.013	1.74	3.0	0.09	12.49	0.02	2.256	0.39	0.55	5.8	93.7	0.4	-0.90	0.75	0.78	3.40	3.6	0.002	0.57	0.0	0.04	14.10	0.00	2.161	5.16	0.08	3.1	96.9	0.0	0.72	0.69	0.78	0.84	2.42	23642	2985	6	0	38	0	0	logfile
✔	7LYM	23595	2021-05-05	2021-03-07	3.57	3.82	—	3.7	0.012	1.71	2.0	0.09	12.55	0.02	2.532	0.21	0.57	5.5	94.3	0.2	-1.16	0.78	0.78	2.67	3.7	0.005	0.66	0.0	0.05	14.19	0.00	2.111	6.68	0.19	4.7	95.3	0.0	0.21	1.27	0.81	0.84	2.23	23912	3005	6	0	33	0	0	logfile

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