Table showing results for May 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8SBB	40303	2023-05-03	2023-04-03	3.59	4.04	3.46	3.9	0.016	1.33	0.0	0.07	15.68	0.01	2.146	19.11	3.99	14.9	85.1	0.0	-5.32	0.64	0.80	2.32	3.9	0.003	0.75	0.0	0.04	15.91	0.01	2.162	7.69	0.23	5.1	94.9	0.0	-2.10	0.84	0.66	0.82	2.28	4049	499	3	0	3	0	0	logfile
✔	8oNT	17000	2023-05-03	2023-04-03	3.66	3.95	3.45	3.9	0.006	0.67	0.0	0.04	16.01	0.01	1.908	33.89	0.87	6.7	93.3	0.0	1.63	0.63	0.79	0.81	3.9	0.003	0.54	0.0	0.04	15.80	0.00	2.083	7.87	0.00	5.6	94.4	0.0	1.77	0.33	0.63	0.77	1.05	4316	558	3	0	1	1	0	logfile
✔	8SAX	40283	2023-05-08	2023-04-02	4.0	4.49	4.01	4.3	0.004	0.65	0.0	0.06	10.03	0.00	2.035	2.64	2.12	2.7	97.0	0.4	-0.49	0.77	0.75	—	4.3	0.003	0.67	0.0	0.04	13.54	0.00	2.116	7.17	0.33	4.0	95.6	0.4	-0.72	2.66	0.79	0.81	—	19860	2496	24	0	51	0	0	logfile
✔	8SAV	40281	2023-05-08	2023-04-02	4.0	4.33	3.51	4.2	0.005	0.92	0.0	0.05	13.89	0.00	2.003	3.04	0.14	6.6	93.2	0.2	-1.54	0.77	0.78	—	4.2	0.004	0.76	0.0	0.05	16.16	0.00	2.001	9.97	0.28	6.7	93.1	0.2	-1.40	0.47	0.77	0.80	—	20451	2514	30	0	54	0	0	logfile
✔	8SAW	40282	2023-05-15	2023-04-02	3.3	3.50	3.30	3.5	0.004	0.65	0.0	0.05	9.00	0.00	2.116	2.03	1.27	3.1	96.8	0.1	-0.32	0.66	0.73	2.34	3.5	0.003	0.56	0.0	0.04	13.31	0.00	2.122	6.00	0.38	3.7	96.1	0.2	-0.80	0.76	0.68	0.78	2.67	38332	2463	24	0	48	0	18589	logfile
✔	8SB2	40288	2023-05-08	2023-04-02	3.5	3.70	3.44	3.6	0.006	1.10	2.0	0.06	13.65	0.01	2.266	3.86	0.00	5.4	94.5	0.2	-2.09	0.74	0.77	2.54	3.6	0.004	0.73	0.0	0.05	15.42	0.00	2.025	8.33	0.42	5.6	94.1	0.3	-1.25	1.16	0.75	0.78	2.24	20186	2478	27	0	82	0	0	logfile
✔	8SB5	40291	2023-05-08	2023-04-02	3.9	4.10	3.92	4.1	0.006	1.00	1.0	0.05	13.78	0.01	2.103	2.80	0.00	5.2	94.4	0.4	-1.51	0.69	0.74	2.61	4.1	0.005	0.79	0.0	0.05	16.04	0.00	2.106	13.26	0.42	7.5	92.2	0.2	-0.75	1.18	0.71	0.77	1.96	20205	2489	24	0	74	0	0	logfile
✔	8SAY	40284	2023-05-08	2023-04-02	3.4	3.65	3.40	3.6	0.006	1.03	0.0	0.06	14.14	0.01	1.984	3.04	0.00	6.5	93.2	0.3	-2.14	0.70	0.74	2.38	3.6	0.003	0.73	0.0	0.04	16.36	0.00	2.160	9.59	0.33	5.8	93.9	0.2	-1.16	1.37	0.72	0.77	2.02	19902	2459	24	0	64	0	0	logfile
✔	8SB0	40286	2023-05-08	2023-04-02	4.2	4.27	3.94	4.2	0.006	0.95	0.0	0.05	13.58	0.01	2.050	2.37	0.05	6.4	93.3	0.2	-1.76	0.73	0.77	—	4.2	0.008	0.90	0.0	0.05	14.06	0.01	2.106	11.77	0.00	9.7	90.1	0.2	-1.98	0.66	0.75	0.79	—	19741	2445	24	0	57	0	0	logfile
✔	8SAU	40280	2023-05-08	2023-04-02	3.3	3.58	3.36	3.5	0.006	0.99	0.0	0.05	14.24	0.01	2.063	3.23	0.05	7.2	92.5	0.3	-2.22	0.69	0.74	2.37	3.6	0.003	0.70	0.0	0.04	16.33	0.00	2.173	7.12	0.28	5.1	94.6	0.2	-0.98	0.84	0.71	0.79	1.99	19884	2466	24	0	57	0	0	logfile
✔	8SB1	40287	2023-05-08	2023-04-02	4.3	4.23	4.16	4.2	0.007	1.00	0.0	0.05	13.81	0.01	2.035	3.18	0.00	7.1	92.7	0.2	-2.33	0.70	0.76	—	4.2	0.004	0.75	0.0	0.04	14.02	0.00	2.145	11.97	0.05	7.0	92.7	0.4	-1.69	0.54	0.69	0.76	—	19979	2466	24	0	67	0	0	logfile
✔	8SB4	40290	2023-05-08	2023-04-02	3.6	3.84	3.60	3.8	0.006	0.93	0.0	0.05	13.78	0.01	2.071	2.69	0.00	4.8	94.8	0.3	-1.55	0.69	0.76	2.46	3.8	0.003	0.72	0.0	0.04	15.96	0.00	2.145	7.43	0.37	3.9	95.8	0.4	-0.81	1.38	0.71	0.79	2.15	20041	2490	24	0	56	0	0	logfile
✔	8SAZ	40285	2023-05-08	2023-04-02	3.9	4.14	3.89	4.1	0.006	0.98	0.0	0.05	14.32	0.01	2.168	2.47	0.14	5.4	94.5	0.1	-1.89	0.72	0.76	2.12	4.1	0.003	0.79	0.0	0.04	16.20	0.00	2.107	9.04	0.52	5.2	94.7	0.2	-1.27	1.45	0.76	0.82	2.25	19960	2466	24	0	65	0	0	logfile
✔	8SB3	40289	2023-05-16	2023-04-02	4.1	4.41	4.14	4.2	0.007	1.04	0.0	0.05	14.16	0.01	2.138	2.68	0.00	7.6	91.9	0.5	-2.11	0.74	0.73	—	4.2	0.004	0.71	0.0	0.04	13.52	0.00	1.922	14.29	0.00	9.3	90.3	0.5	-2.28	1.35	0.77	0.78	—	38690	2460	24	0	79	0	18600	logfile
✔	8SAR	40277	2023-05-08	2023-04-01	3.82	3.32	3.81	3.2	0.006	1.11	0.0	0.06	14.50	0.01	2.247	4.44	0.00	7.4	92.2	0.4	-2.28	0.62	0.73	1.75	3.2	0.003	0.70	0.0	0.05	16.46	0.00	2.122	10.32	0.23	9.3	90.4	0.2	-1.81	0.45	0.62	0.74	1.36	19963	2465	27	0	63	0	0	logfile
✔	8SAQ	40275	2023-05-08	2023-04-01	3.9	4.17	3.91	4.1	0.005	0.88	0.0	0.05	12.51	0.01	1.985	5.03	0.05	7.7	92.0	0.2	-1.78	0.73	0.77	2.26	4.1	0.003	0.78	0.0	0.04	15.40	0.00	2.102	10.82	0.29	6.3	93.5	0.1	-1.33	1.17	0.74	0.79	1.77	18946	2364	21	0	36	0	0	logfile
✔	8SAN	40274	2023-05-08	2023-04-01	4.6	4.80	4.46	4.7	0.006	0.97	0.0	0.06	13.48	0.01	2.064	5.03	0.09	9.9	89.9	0.2	-2.24	0.68	0.75	—	4.7	0.003	0.81	0.0	0.05	13.97	0.00	2.083	15.37	0.05	9.4	90.4	0.2	-2.04	0.61	0.70	0.77	—	19908	2454	21	0	48	0	0	logfile
✔	8SAL	40273	2023-05-08	2023-04-01	4.9	5.54	4.74	5.0	0.005	0.89	0.0	0.05	13.67	0.01	2.065	4.56	0.00	8.4	91.4	0.1	-2.31	0.76	0.70	—	5.0	0.004	0.83	0.0	0.05	13.29	0.01	2.042	24.63	0.00	9.2	90.7	0.1	-1.99	2.48	0.79	0.77	—	18435	2343	12	0	0	0	0	logfile
✔	8SAS	40278	2023-05-08	2023-04-01	4.0	4.28	4.02	4.2	0.008	1.18	0.0	0.06	13.80	0.01	2.002	4.09	0.00	8.7	90.9	0.4	-3.16	0.69	0.72	—	4.2	0.005	0.88	0.0	0.05	16.52	0.00	2.037	14.56	0.98	8.4	91.3	0.3	-2.21	1.04	0.74	0.80	—	20028	2472	24	0	66	0	0	logfile
✘	8iTU	35328	2023-05-12	2023-03-23	3.68	3.82	3.61	3.7	0.004	0.58	0.0	0.05	13.18	0.00	2.203	9.40	0.00	3.8	96.1	0.1	-0.09	0.72	0.74	1.38	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	30144	3803	27	0	44	0	0	logfile

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