Table showing results for May 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9BH6	44534	2024-05-13	2024-04-19	3.3	2.41	3.32	3.3	0.003	0.61	0.0	0.04	12.64	0.01	2.304	1.35	0.00	0.5	99.4	0.1	-1.51	0.84	0.81	3.48	3.3	0.002	0.56	0.0	0.04	15.22	0.00	2.193	5.66	1.38	1.5	98.5	0.0	1.76	1.36	0.85	0.81	2.27	24388	3096	4	0	0	0	0	logfile
✔	9BH9	44537	2024-05-09	2024-04-19	3.5	3.53	3.42	3.5	0.003	0.68	0.0	0.05	15.03	0.01	2.362	1.75	0.07	0.6	99.4	0.0	-2.11	0.72	0.76	2.80	3.5	0.003	0.64	0.0	0.04	17.61	0.00	2.205	7.95	1.92	2.2	97.8	0.0	0.82	1.87	0.74	0.77	1.48	13155	1574	4	50	0	0	0	logfile
✔	9BHA	44538	2024-05-09	2024-04-19	3.5	3.62	3.42	3.6	0.003	0.65	0.0	0.04	15.47	0.01	2.343	1.70	0.00	0.5	99.4	0.1	-1.83	0.72	0.77	2.78	3.6	0.006	0.73	0.0	0.04	18.04	0.00	2.164	8.91	2.20	3.1	96.9	0.0	0.33	0.81	0.74	0.79	2.13	13264	1586	4	49	0	0	0	logfile
✔	9BH7	44535	2024-05-09	2024-04-19	3.5	3.43	3.54	3.6	0.003	0.64	0.0	0.04	12.66	0.01	2.370	1.58	0.00	0.7	99.2	0.1	-1.16	0.83	0.78	2.21	3.6	0.003	0.59	0.0	0.04	15.81	0.00	2.192	7.98	2.32	2.1	97.9	0.0	2.05	2.05	0.83	0.78	0.89	12166	1544	2	0	0	0	0	logfile
✔	9BH8	44536	2024-05-09	2024-04-19	3.6	3.61	3.50	3.5	0.003	0.64	0.0	0.04	15.49	0.01	2.310	1.53	0.15	0.7	99.3	0.0	-2.28	0.74	0.75	2.34	3.5	0.003	0.67	0.0	0.04	17.54	0.00	2.156	9.76	1.84	2.2	97.8	0.0	0.84	1.23	0.76	0.76	1.46	13051	1574	4	44	0	0	0	logfile
✔	9BEi	44479	2024-05-07	2024-04-15	4.16	4.77	4.14	4.2	0.003	0.78	0.0	0.05	14.43	0.01	2.016	21.15	0.00	9.2	90.7	0.1	-1.93	0.85	0.73	—	4.2	0.005	0.81	0.0	0.05	14.48	0.01	2.094	30.93	0.00	11.7	88.3	0.0	-1.86	0.48	0.85	0.74	—	6649	862	5	0	0	0	0	logfile
✔	9EWX	50025	2024-05-13	2024-04-05	3.17	2.84	3.08	3.0	0.002	0.42	0.0	0.04	17.57	0.00	2.318	3.78	0.88	0.7	99.3	0.0	2.80	0.68	0.88	2.05	3.0	0.003	0.50	0.0	0.05	16.62	0.00	2.164	6.49	3.39	1.9	98.1	0.0	2.89	0.95	0.67	0.89	1.89	23989	3289	23	0	0	0	0	logfile
✔	9EWQ	50022	2024-05-09	2024-04-04	3.0	3.34	3.05	3.3	0.004	0.57	0.0	0.05	13.59	0.00	2.141	4.88	0.08	5.2	94.8	0.0	-1.34	0.82	0.88	4.02	3.3	0.004	0.83	1.0	0.05	15.11	0.00	2.141	6.08	2.11	3.8	96.2	0.0	-1.07	0.24	0.77	0.88	3.27	11904	1540	4	0	0	0	0	logfile
✘	9AYG	43991	2024-05-07	2024-03-07	3.0	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8822	1055	2	0	12	0	0	logfile
✔	9AYF	43990	2024-05-11	2024-03-07	3.6	2.18	—	2.0	0.004	0.67	0.0	0.05	14.71	0.01	2.191	5.85	0.00	2.5	97.5	0.0	0.19	0.79	0.77	2.69	1.9	0.003	0.54	0.0	0.04	15.38	0.00	2.168	6.08	2.66	3.2	96.8	0.0	0.40	0.32	0.80	0.78	2.96	19630	2441	14	0	27	0	0	logfile
✔	9AXF	43966	2024-05-12	2024-03-06	3.5	2.15	—	2.9	0.005	0.78	0.0	0.06	13.15	0.00	2.162	5.78	0.00	2.4	97.6	0.0	0.13	0.80	0.80	4.05	2.9	0.005	0.58	0.0	0.04	14.19	0.00	2.126	5.38	2.45	3.3	96.7	0.0	0.58	0.33	0.81	0.80	3.70	21342	2607	15	0	40	0	0	logfile
✔	8YJY	39353	2024-05-06	2024-03-03	3.3	3.57	3.37	3.6	0.004	0.74	0.0	0.04	17.28	0.01	2.175	9.73	0.22	3.8	96.2	0.0	1.48	0.66	0.74	2.15	3.6	0.003	0.65	0.0	0.04	17.77	0.00	2.231	8.66	4.18	4.0	96.0	0.0	1.64	0.84	0.66	0.74	1.71	4254	530	2	0	0	0	0	logfile
✔	9AUC	43877	2024-05-08	2024-02-28	2.4	2.09	2.10	2.6	0.003	0.48	3.0	0.04	13.24	0.00	2.239	4.66	0.91	0.9	99.1	0.0	-3.20	0.64	0.80	3.68	2.5	0.004	0.61	0.0	0.04	16.42	0.00	2.198	6.46	1.65	2.5	97.5	0.0	0.93	0.66	0.64	0.83	3.76	10369	1275	11	0	10	16	0	logfile
✔	8S5K	19738	2024-05-15	2024-02-23	3.8	3.96	3.75	3.9	0.004	0.75	0.0	0.04	14.70	0.01	1.967	7.13	0.15	3.0	96.8	0.1	0.58	0.76	0.72	1.58	3.8	0.007	0.68	0.0	0.04	15.24	0.00	1.939	12.72	1.49	6.1	93.9	0.0	-0.08	1.02	0.79	0.79	1.33	63696	4056	16	0	8	0	31792	logfile
✔	8S5L	19739	2024-05-14	2024-02-23	3.8	4.03	3.83	4.0	0.006	0.78	0.0	0.04	15.68	0.01	1.962	8.71	0.14	5.6	94.2	0.2	-0.18	0.81	0.80	2.00	3.9	0.005	0.61	0.0	0.04	15.91	0.00	1.991	11.37	2.19	6.2	93.6	0.2	-0.33	1.35	0.81	0.80	1.83	27253	1740	8	0	6	0	13567	logfile
✔	8S5H	19735	2024-05-15	2024-02-23	3.7	4.00	3.77	3.8	0.004	0.66	0.0	0.04	14.76	0.01	2.035	6.20	0.00	1.6	98.2	0.2	0.92	0.74	0.74	0.97	3.8	0.005	0.69	0.0	0.04	15.21	0.00	1.936	10.55	1.75	3.5	96.4	0.1	0.59	1.26	0.76	0.79	0.97	63696	4056	16	0	8	0	31792	logfile
✔	8S55	19726	2024-05-17	2024-02-22	3.4	4.14	—	4.0	0.005	0.82	0.0	0.08	15.61	0.01	1.747	11.88	0.00	5.7	94.2	0.0	0.29	0.72	0.75	1.65	3.9	0.003	0.66	0.0	0.04	17.47	0.00	2.029	12.63	2.05	5.5	94.5	0.0	0.30	0.50	0.73	0.79	1.58	38148	4514	27	95	10	0	0	logfile
✔	8S54	19720	2024-05-17	2024-02-22	3.4	4.12	3.33	3.9	0.005	0.99	1.0	0.08	15.63	0.01	1.522	6.84	0.03	5.3	94.6	0.0	-1.66	0.72	0.77	1.54	3.9	0.003	0.69	0.0	0.04	17.31	0.00	1.945	13.68	2.08	5.0	95.0	0.0	-0.06	1.15	0.73	0.79	1.53	36745	4343	26	95	10	0	0	logfile
✔	8S3E	19691	2024-05-15	2024-02-20	2.39	2.88	2.50	2.8	0.003	0.76	0.0	0.07	16.61	0.00	2.107	7.04	1.81	2.4	97.6	0.0	0.94	0.65	0.78	2.68	2.8	0.004	0.80	0.0	0.07	16.74	0.00	2.193	9.51	2.38	2.7	97.3	0.0	0.71	0.33	0.60	0.75	2.71	31585	3800	16	0	68	13	0	logfile
✔	8W2L	43751	2024-05-17	2024-02-20	2.45	2.62	2.46	2.6	0.009	1.18	0.0	0.05	20.38	0.01	1.970	2.72	0.11	7.2	92.2	0.6	-4.03	0.67	0.76	4.28	2.7	0.002	0.63	0.0	0.04	18.64	0.00	2.163	8.74	1.28	6.1	93.7	0.2	1.24	0.74	0.73	0.85	2.72	35797	4056	12	0	65	164	0	logfile

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