Table showing results for May 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8XJM	38401	2024-05-07	2023-12-21	2.85	3.04	2.79	3.0	0.003	0.42	0.0	0.04	10.25	0.00	2.256	4.68	1.05	1.3	98.7	0.0	1.55	0.67	0.82	4.65	3.0	0.003	0.55	0.0	0.04	14.72	0.00	2.198	7.31	2.43	1.9	98.1	0.0	2.00	1.19	0.68	0.83	4.09	8849	1140	6	0	1	0	0	logfile
✔	8XJo	38403	2024-05-07	2023-12-21	3.11	3.33	3.18	3.3	0.006	0.62	0.0	0.15	8.84	0.00	2.213	5.30	1.06	1.2	98.8	0.0	1.07	0.65	0.80	3.29	3.3	0.004	0.59	0.0	0.04	14.07	0.00	2.108	7.62	3.70	1.7	98.3	0.0	1.36	0.60	0.65	0.81	2.63	8950	1164	6	0	1	0	0	logfile
✔	8RJL	19251	2024-05-17	2023-12-21	3.34	3.79	3.44	3.8	0.012	1.32	12.0	0.07	16.84	0.01	1.607	10.76	4.59	12.5	86.4	1.1	-5.23	0.66	0.76	1.32	3.8	0.003	0.79	0.0	0.04	17.00	0.00	2.025	4.52	2.34	4.4	95.6	0.0	0.17	0.64	0.62	0.73	0.77	36300	4575	18	0	0	0	0	logfile
✔	8XJL	38400	2024-05-07	2023-12-21	2.77	2.89	2.74	2.9	0.004	0.48	0.0	0.04	10.36	0.00	2.225	5.03	1.05	1.1	98.9	0.0	1.28	0.70	0.80	3.93	2.9	0.003	0.53	0.0	0.04	14.80	0.00	2.174	6.91	1.05	1.7	98.3	0.0	1.83	0.59	0.68	0.80	3.27	8846	1140	6	0	1	0	0	logfile
✔	8XJ7	38395	2024-05-11	2023-12-20	2.74	3.10	2.92	3.0	0.005	0.73	1.0	0.04	17.62	0.00	2.027	8.63	1.55	5.1	94.6	0.3	-0.64	0.74	0.84	3.38	3.0	0.005	0.87	2.0	0.05	16.89	0.01	1.835	10.84	2.62	5.8	93.9	0.3	-0.71	0.32	0.75	0.85	3.48	19595	2420	13	6	9	0	0	logfile
✔	8XJ6	38394	2024-05-12	2023-12-20	3.32	3.84	3.59	3.7	0.005	0.75	0.0	0.05	14.55	0.00	2.196	12.87	0.40	3.7	95.8	0.5	-0.25	0.76	0.78	1.67	3.7	0.003	0.61	0.0	0.04	15.17	0.00	2.093	13.82	1.39	4.2	95.4	0.3	-0.14	0.59	0.76	0.80	1.45	22688	2807	12	0	8	0	0	logfile
✔	8XJ4	38393	2024-05-06	2023-12-20	3.19	3.42	3.49	3.7	0.005	0.80	0.0	0.05	19.96	0.02	2.221	6.60	1.57	2.8	97.2	0.0	1.21	0.73	0.81	3.19	3.7	0.003	0.69	0.0	0.04	17.63	0.01	2.278	5.47	1.26	3.8	96.2	0.0	1.68	1.19	0.69	0.79	2.39	5820	693	6	0	12	0	0	logfile
✔	8XJ8	38396	2024-05-10	2023-12-20	2.67	2.90	2.75	3.2	0.004	0.73	0.0	0.04	17.64	0.00	2.015	5.62	2.00	4.0	95.3	0.7	-0.63	0.40	0.36	0.23	2.9	0.002	0.58	0.0	0.04	17.71	0.00	2.051	6.15	1.77	3.6	96.0	0.4	0.07	2.12	0.75	0.86	2.87	15904	1957	10	6	6	0	0	logfile
✔	8Ri9	19184	2024-05-06	2023-12-18	3.3	3.49	2.64	3.5	0.011	1.88	0.0	0.08	12.25	0.01	2.613	3.55	2.38	3.6	96.4	0.0	-1.61	0.44	0.71	6.15	3.7	0.002	0.48	0.0	0.05	11.26	0.00	2.207	4.50	1.90	11.3	88.7	0.0	-1.22	0.62	0.29	0.63	5.87	4230	295	5	0	0	0	2180	logfile
✔	8VE0	43160	2024-05-06	2023-12-18	3.1	2.92	2.99	3.1	0.006	0.62	0.0	0.05	13.41	0.00	2.234	5.96	0.57	0.2	99.8	0.0	1.74	0.73	0.79	4.26	3.1	0.002	0.54	0.0	0.05	14.87	0.00	2.195	7.99	1.71	1.5	98.5	0.0	1.32	0.36	0.74	0.81	3.46	3527	466	6	0	2	0	0	logfile
✔	8RHZ	19179	2024-05-10	2023-12-17	3.37	2.52	3.41	2.2	0.007	0.62	0.0	0.04	12.49	0.00	1.789	4.92	0.12	6.5	93.5	0.0	-1.29	0.76	0.78	2.52	2.2	0.003	0.53	0.0	0.04	13.27	0.00	2.047	3.10	1.31	3.2	96.8	0.0	3.18	0.90	0.76	0.80	2.12	15223	2439	6	0	6	0	0	logfile
✔	8RHN	19177	2024-05-17	2023-12-15	4.5	4.44	4.58	4.1	0.006	0.80	2.0	0.05	14.00	0.01	1.290	11.68	0.00	12.9	87.0	0.1	-4.53	0.80	0.73	—	4.1	0.003	0.70	0.0	0.04	14.12	0.00	2.034	4.83	0.00	7.4	92.6	0.0	-0.39	1.25	0.80	0.72	—	38368	4976	16	0	0	0	0	logfile
✔	8XGR	38330	2024-05-08	2023-12-15	3.2	3.95	3.21	3.7	0.003	0.56	0.0	0.04	13.83	0.00	2.126	7.33	0.22	3.7	96.3	0.0	-2.13	0.69	0.74	2.11	3.8	0.004	0.78	0.0	0.05	16.33	0.00	2.167	16.00	4.12	4.6	95.4	0.0	-0.84	3.07	0.68	0.79	1.00	8206	1049	5	0	0	0	0	logfile
✔	8RGT	19148	2024-05-16	2023-12-14	3.1	3.41	—	3.1	0.006	0.87	0.0	1.03	15.62	0.01	2.192	6.14	0.00	3.8	96.2	0.0	-0.03	0.92	0.90	2.87	3.1	0.008	1.57	0.0	0.31	16.30	0.00	2.067	10.75	1.52	3.4	96.6	0.0	1.37	0.32	0.92	0.90	2.68	67123	8151	67	0	43	0	0	logfile
✘	8VDE	43147	2024-05-18	2023-12-14	3.4	3.79	3.62	3.7	0.006	0.86	0.0	0.05	13.48	0.01	2.235	1.81	0.09	3.4	96.6	0.0	-1.45	0.59	0.79	2.60	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	70177	8643	27	0	0	0	0	logfile
✔	8RGQ	19146	2024-05-16	2023-12-14	3.0	3.59	—	3.0	0.006	0.85	0.0	1.03	14.91	0.01	2.151	6.59	0.01	3.7	96.3	0.0	0.03	0.93	0.90	3.06	3.0	0.009	1.61	1.0	0.31	16.18	0.00	2.007	13.40	1.27	3.4	96.6	0.0	1.39	2.16	0.93	0.90	2.87	67118	8151	67	0	43	0	0	logfile
✔	8RGP	19145	2024-05-17	2023-12-14	3.0	3.32	—	2.9	0.007	0.81	0.0	1.02	14.65	0.01	1.897	6.02	2.76	6.0	94.0	0.0	-0.42	0.93	0.91	3.47	3.0	0.008	1.59	0.0	0.31	15.92	0.00	1.984	11.09	2.32	5.7	94.3	0.0	0.78	0.37	0.93	0.90	3.02	67868	8222	69	0	45	0	0	logfile
✔	8RGR	19147	2024-05-17	2023-12-14	2.9	3.44	—	2.9	0.006	0.75	0.0	1.02	14.30	0.01	2.134	5.33	1.62	3.5	96.5	0.0	0.22	0.93	0.91	3.84	2.9	0.008	1.59	1.0	0.31	15.46	0.00	1.992	11.52	1.41	3.3	96.7	0.0	1.44	0.36	0.93	0.90	3.22	68141	8236	69	0	49	0	0	logfile
✔	8VC2	43130	2024-05-09	2023-12-13	3.98	4.39	3.99	4.4	0.006	0.84	0.0	0.04	14.09	0.01	2.353	2.91	0.31	2.4	97.6	0.0	-0.98	0.57	0.71	1.08	4.4	0.004	0.96	1.0	0.04	16.35	0.01	2.236	10.63	4.64	2.7	97.3	0.0	1.52	2.23	0.56	0.73	1.08	11796	1516	8	0	4	0	0	logfile
✔	8RGH	19133	2024-05-08	2023-12-13	3.9	4.34	3.89	4.0	0.012	1.88	4.0	0.10	14.04	0.02	2.504	0.53	0.00	4.7	95.3	0.0	-1.05	0.82	0.66	1.27	4.0	0.003	0.67	0.0	0.04	15.90	0.00	2.129	12.82	1.05	3.4	96.6	0.0	0.82	1.22	0.84	0.69	1.02	9682	1287	6	0	0	0	0	logfile

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