Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8Y5Z	38960	2025-05-11	2024-02-01	3.35	3.68	3.40	3.7	0.003	0.61	0.0	0.04	13.09	0.01	2.201	8.65	0.00	4.7	95.3	0.0	1.63	0.65	0.84	2.63	3.7	0.002	0.57	0.0	0.04	15.38	0.01	2.282	6.66	1.62	4.8	95.2	0.0	1.85	0.92	0.65	0.85	1.98	7918	1016	4	0	4	0	0	logfile
✔	8RVN	19525	2025-05-14	2024-02-01	3.5	3.62	3.48	3.5	0.004	0.80	0.0	0.05	13.59	0.02	1.949	4.85	0.30	3.8	96.2	0.0	-0.44	0.78	0.85	2.25	3.5	0.003	0.59	0.0	0.05	15.05	0.00	2.427	3.72	1.94	4.2	95.8	0.0	-0.14	1.16	0.78	0.85	2.00	11924	1540	8	0	12	0	0	logfile
✔	8Y56	38930	2025-05-10	2024-01-31	2.83	3.24	2.97	3.1	0.006	0.73	2.0	0.04	15.56	0.00	2.279	12.30	0.98	3.1	96.9	0.0	0.73	0.59	0.76	3.30	3.2	0.004	0.61	0.0	0.04	15.48	0.00	2.521	9.66	1.96	3.6	96.4	0.0	2.33	1.91	0.54	0.75	3.31	4796	586	2	0	7	5	0	logfile
✔	8RUQ	19514	2025-05-21	2024-01-31	2.29	3.29	2.31	2.8	0.004	0.57	0.0	0.04	28.43	0.00	2.076	2.34	0.64	1.7	98.3	0.0	2.96	0.91	0.88	3.99	2.8	0.005	0.59	0.0	0.04	28.27	0.00	2.431	2.06	1.11	2.1	97.9	0.0	2.98	0.17	0.89	0.89	4.10	21818	784	11	294	0	0	9671	logfile
✔	8VW3	43575	2025-05-12	2024-01-31	3.47	3.56	3.37	3.5	0.002	0.38	0.0	0.03	12.88	0.00	2.141	5.39	0.00	2.0	98.0	0.0	2.82	0.56	0.84	1.74	3.5	0.003	0.51	0.0	0.04	15.58	0.00	2.484	7.67	1.63	2.7	97.3	0.0	2.58	1.63	0.59	0.87	1.73	8856	1104	6	0	0	0	0	logfile
✔	8Y5J	38937	2025-05-23	2024-01-31	2.94	4.00	3.10	3.5	0.004	0.66	0.0	0.05	13.62	0.01	2.216	6.70	0.08	6.5	93.2	0.2	-0.78	0.87	0.87	2.60	3.5	0.002	0.61	0.0	0.04	14.75	0.00	2.445	5.44	1.13	5.9	94.0	0.2	-0.62	1.01	0.86	0.87	2.28	24146	3018	10	0	35	0	0	logfile
✔	8Y5H	38935	2025-05-14	2024-01-31	3.1	2.41	3.18	2.1	0.007	0.85	1.0	0.05	14.34	0.01	2.206	8.39	0.52	7.0	93.0	0.0	-1.85	0.79	0.79	3.24	2.1	0.004	0.66	0.0	0.04	16.97	0.01	2.137	5.47	3.02	5.2	94.8	0.0	-0.07	0.44	0.81	0.81	2.03	12405	1562	7	0	1	1	0	logfile
✔	8VVi	43560	2025-05-11	2024-01-31	2.8	3.04	2.78	3.1	0.002	0.44	0.0	0.04	13.85	0.00	2.197	7.21	0.00	3.9	96.1	0.0	-0.11	0.63	0.80	3.25	3.1	0.004	0.59	0.0	0.04	16.83	0.00	2.429	7.15	1.65	4.1	95.9	0.0	1.26	1.69	0.67	0.84	3.02	7762	968	7	0	0	0	0	logfile
✔	8VVF	43557	2025-05-12	2024-01-31	3.0	2.62	—	3.1	0.003	0.67	0.0	0.05	12.63	0.00	2.229	5.99	0.00	4.7	95.3	0.0	-1.37	0.77	0.75	1.34	3.1	0.004	0.69	0.0	0.04	15.76	0.00	2.321	11.86	2.67	5.1	94.9	0.0	-0.17	0.56	0.78	0.77	1.76	8581	1135	6	0	1	0	0	logfile
✔	8VVH	43559	2025-05-11	2024-01-31	3.95	4.19	3.93	4.1	0.002	0.61	0.0	0.04	17.03	0.00	2.220	9.03	0.88	7.1	92.7	0.2	-1.64	0.68	0.80	1.58	4.1	0.003	0.66	0.0	0.04	17.00	0.00	2.522	6.33	6.31	7.7	92.2	0.1	-1.35	0.30	0.69	0.80	1.55	6877	941	4	0	0	0	0	logfile
✔	8VVZ	43573	2025-05-12	2024-01-31	3.41	3.62	3.43	3.6	0.001	0.37	0.0	0.03	14.14	0.00	2.257	6.73	0.00	2.2	97.8	0.0	2.19	0.53	0.80	1.35	3.6	0.003	0.51	0.0	0.04	16.63	0.00	2.394	6.51	1.52	2.6	97.4	0.0	2.73	3.07	0.59	0.85	1.69	8856	1104	6	0	0	0	0	logfile
✔	8VVN	43563	2025-05-15	2024-01-31	2.2	2.40	—	2.4	0.004	0.60	0.0	0.04	13.90	0.00	2.098	10.00	0.00	3.1	96.9	0.1	0.25	0.66	0.82	3.74	2.4	0.003	0.53	0.0	0.04	16.39	0.00	2.219	5.99	0.72	2.5	97.4	0.1	1.65	0.33	0.66	0.84	3.12	12935	1610	16	0	2	140	0	logfile
✔	8RUP	19513	2025-05-25	2024-01-31	2.42	2.13	—	1.6	0.006	0.69	0.0	0.04	27.44	0.01	2.215	5.85	0.73	2.0	98.0	0.0	1.21	0.76	0.71	2.15	1.6	0.004	0.63	0.0	0.04	27.28	0.01	2.277	5.02	3.06	3.1	96.9	0.0	2.19	1.04	0.76	0.73	2.23	25466	1021	14	294	1	0	11444	logfile
✔	8VVY	43572	2025-05-16	2024-01-31	3.49	3.69	3.51	3.6	0.003	0.61	0.0	0.04	14.71	0.00	2.243	8.96	0.18	4.8	95.2	0.1	0.80	0.71	0.78	1.16	3.7	0.004	0.64	0.0	0.04	16.25	0.00	2.564	6.95	1.58	4.4	95.6	0.0	1.43	0.36	0.71	0.80	0.95	14950	1901	2	0	0	0	0	logfile
✔	8Y51	38927	2025-05-12	2024-01-31	3.3	4.02	3.23	3.7	0.002	0.43	0.0	0.04	8.23	0.00	2.053	5.64	0.21	0.8	99.1	0.1	-0.93	0.69	0.74	1.74	3.6	0.004	0.75	0.0	0.04	14.27	0.00	2.489	9.75	2.77	2.3	97.7	0.0	1.12	2.10	0.70	0.83	1.81	8883	1130	5	0	0	0	0	logfile
✔	8Y52	38928	2025-05-11	2024-01-31	2.9	4.04	2.89	3.5	0.004	0.62	2.0	0.04	7.69	0.00	2.056	5.55	0.25	1.5	98.5	0.0	-1.50	0.65	0.74	1.75	3.5	0.008	0.99	1.0	0.05	12.83	0.01	1.843	31.23	1.98	2.2	97.8	0.0	-0.90	3.24	0.67	0.83	1.62	7380	931	5	0	1	0	0	logfile
✔	8RV2	19522	2025-05-18	2024-01-31	3.41	3.57	3.38	3.5	0.002	0.47	0.0	0.04	17.14	0.00	2.017	6.10	0.05	1.8	98.2	0.0	-0.02	0.78	0.81	2.27	3.5	0.003	0.59	0.0	0.04	17.24	0.00	1.979	7.06	2.36	2.5	97.5	0.0	0.43	1.33	0.78	0.81	1.78	17248	2178	10	0	9	0	0	logfile
✔	8VVW	43571	2025-05-11	2024-01-31	3.29	3.42	3.24	3.4	0.003	0.42	0.0	0.03	13.09	0.00	2.296	5.47	0.00	2.3	97.7	0.0	2.54	0.59	0.86	1.97	3.4	0.003	0.54	0.0	0.04	16.09	0.00	2.234	6.81	2.20	2.9	97.1	0.0	2.88	1.48	0.59	0.87	2.12	7380	920	5	0	0	0	0	logfile
✔	8Y5F	38933	2025-05-13	2024-01-31	3.13	2.36	3.22	2.2	0.003	0.66	1.0	0.05	17.96	0.01	2.255	6.71	1.84	4.3	95.5	0.2	0.71	0.78	0.79	2.17	2.1	0.003	0.64	0.0	0.04	17.87	0.01	2.418	4.86	3.23	4.1	95.8	0.1	0.79	0.86	0.79	0.81	1.71	9846	1240	4	0	0	0	0	logfile
✔	8VV3	43548	2025-05-14	2024-01-30	2.61	2.94	2.67	2.9	0.004	0.52	0.0	0.04	14.37	0.00	2.233	8.42	0.00	4.2	95.8	0.0	2.23	0.61	0.75	1.70	2.9	0.003	0.59	0.0	0.04	16.78	0.00	2.478	9.51	3.99	4.2	95.8	0.0	2.82	1.59	0.59	0.75	2.04	12172	1548	8	0	4	0	0	logfile

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