Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8VUZ	43545	2025-05-10	2024-01-30	3.95	4.14	3.94	4.1	0.012	0.81	0.0	0.04	17.38	0.01	2.050	13.66	0.13	6.8	93.1	0.1	-0.21	0.74	0.85	2.04	4.1	0.004	0.74	0.0	0.04	17.48	0.00	2.468	11.07	4.61	6.3	93.7	0.0	0.15	0.95	0.75	0.84	1.41	6626	869	4	0	0	0	0	logfile
✔	8VVC	43550	2025-05-15	2024-01-30	4.32	4.77	4.36	4.4	0.003	0.75	0.0	0.05	14.07	0.00	2.196	13.22	0.25	7.7	92.2	0.1	-0.65	0.60	0.80	—	4.4	0.003	0.73	0.0	0.04	14.10	0.00	2.336	11.73	0.00	6.5	93.4	0.1	0.02	0.52	0.60	0.81	—	10989	1390	1	0	0	0	0	logfile
✔	8VUY	43544	2025-05-26	2024-01-30	3.81	4.09	3.86	4.0	0.003	0.62	0.0	0.04	16.77	0.00	2.099	7.67	0.22	7.3	92.5	0.1	-0.85	0.74	0.77	1.39	4.0	0.007	0.78	0.0	0.05	17.12	0.00	2.417	7.86	5.29	10.2	89.7	0.1	-0.97	1.25	0.74	0.77	1.51	25643	3610	8	0	0	0	0	logfile
✔	8Y4C	38915	2025-05-28	2024-01-30	3.75	4.00	3.78	3.8	0.006	0.81	0.0	0.05	16.28	0.01	2.035	16.64	0.51	8.4	91.3	0.3	-1.60	0.79	0.81	1.57	3.8	0.004	0.73	0.0	0.05	16.26	0.00	2.450	10.25	3.00	8.1	91.6	0.3	-1.41	0.42	0.79	0.80	1.52	31050	3900	12	0	54	0	0	logfile
✔	8Y48	38910	2025-05-14	2024-01-30	3.26	4.13	3.17	3.6	0.003	0.51	0.0	0.04	15.02	0.00	2.298	6.70	0.00	5.6	94.4	0.0	-0.61	0.89	0.89	2.07	3.6	0.010	0.68	0.0	0.04	15.48	0.00	2.541	4.68	3.27	7.8	92.2	0.0	-0.94	0.92	0.89	0.88	2.36	12051	1674	3	0	0	0	0	logfile
✘	8VV0	43546	2025-05-15	2024-01-30	3.1	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13250	1580	15	0	30	0	0	logfile
✔	8Y4A	38914	2025-05-27	2024-01-30	3.4	3.68	3.49	3.6	0.005	0.83	1.0	0.05	19.32	0.01	2.203	9.29	0.82	7.7	91.9	0.4	-1.76	0.73	0.80	1.80	3.6	0.003	0.67	0.0	0.05	16.39	0.00	2.461	6.40	3.61	8.0	91.9	0.1	-1.19	0.55	0.74	0.83	2.00	29416	3649	24	0	68	0	0	logfile
✔	8VUT	43539	2025-05-26	2024-01-29	3.7	3.95	3.75	3.9	0.004	0.63	0.0	0.04	16.55	0.00	2.087	8.94	0.40	12.2	87.3	0.5	-1.03	0.72	0.73	1.00	3.9	0.002	0.60	0.0	0.04	16.88	0.00	2.494	6.41	5.23	10.1	89.4	0.5	-0.52	0.29	0.74	0.82	0.85	28819	3998	8	0	0	0	0	logfile
✔	8Y3o	38893	2025-05-18	2024-01-29	2.75	3.08	2.94	3.1	0.003	0.75	0.0	0.05	13.07	0.01	2.217	6.58	0.00	4.1	95.9	0.0	-1.28	0.64	0.76	3.15	3.1	0.004	0.63	0.0	0.05	16.01	0.00	2.529	8.99	2.08	4.5	95.5	0.0	-1.09	0.36	0.62	0.77	3.05	17058	2163	9	0	0	0	0	logfile
✔	8VUQ	43536	2025-05-12	2024-01-29	3.85	4.17	3.92	4.1	0.003	0.62	0.0	0.04	17.33	0.01	2.133	8.08	0.66	12.1	87.5	0.4	-1.68	0.71	0.83	1.47	4.1	0.004	0.66	0.0	0.04	17.44	0.00	2.485	6.78	6.39	12.1	87.3	0.5	-1.58	0.31	0.70	0.82	1.11	8657	1161	4	0	0	0	0	logfile
✔	8Y3F	38880	2025-05-20	2024-01-29	4.54	4.30	4.42	4.1	0.004	0.75	0.0	0.04	29.36	0.01	1.966	17.14	0.00	1.1	98.9	0.0	1.03	0.78	0.63	—	4.1	0.005	0.74	0.0	0.04	29.91	0.01	2.011	18.31	0.00	2.8	97.2	0.0	0.63	1.77	0.85	0.77	—	20173	1247	16	500	0	0	0	logfile
✔	8VUU	43540	2025-05-26	2024-01-29	4.05	4.36	4.13	4.2	0.010	0.97	0.0	0.04	16.68	0.01	2.047	14.52	0.19	9.4	90.3	0.3	-1.91	0.68	0.68	—	4.2	0.005	0.73	0.0	0.05	13.48	0.01	2.299	10.21	0.00	10.3	89.5	0.3	-1.63	0.97	0.69	0.70	—	28618	4026	8	0	0	0	0	logfile
✔	8Y3V	38900	2025-05-09	2024-01-29	3.46	3.65	2.21	3.6	0.006	0.73	0.0	0.05	12.74	0.01	2.342	6.61	0.00	11.1	88.9	0.0	-2.06	0.48	0.85	4.09	3.7	0.003	0.63	0.0	0.05	15.12	0.00	2.572	5.29	1.70	7.9	92.1	0.0	-0.73	0.28	0.45	0.84	3.52	3785	513	4	0	0	0	0	logfile
✔	8VUL	43532	2025-05-11	2024-01-29	3.83	4.04	6.72	4.0	0.004	0.68	0.0	0.04	16.80	0.01	2.218	7.73	0.27	8.8	90.9	0.3	-1.67	0.75	0.82	1.77	4.0	0.004	0.69	0.0	0.04	17.22	0.00	2.427	6.01	3.41	9.7	89.9	0.3	-1.43	0.30	0.74	0.82	1.70	7158	963	4	0	0	0	0	logfile
✔	8Y3Q	38895	2025-05-17	2024-01-29	2.98	3.14	2.96	3.2	0.003	0.55	0.0	0.04	12.96	0.00	2.176	4.85	0.00	3.3	96.7	0.0	-0.01	0.67	0.78	3.59	3.2	0.003	0.56	0.0	0.04	15.40	0.00	2.575	4.17	2.85	3.4	96.6	0.0	0.53	0.51	0.72	0.84	3.09	15738	2016	9	0	0	0	0	logfile
✔	8VUJ	43531	2025-05-24	2024-01-29	3.92	4.21	3.99	4.1	0.002	0.58	0.0	0.04	16.85	0.00	2.190	8.16	0.40	11.1	88.6	0.3	-1.13	0.77	0.83	1.10	4.1	0.003	0.63	0.0	0.04	17.00	0.00	2.512	5.94	4.31	11.2	88.5	0.3	-0.97	0.25	0.77	0.83	1.12	25184	3588	8	0	0	0	0	logfile
✘	8Y3P	38894	2025-05-18	2024-01-29	3.48	3.68	3.57	3.6	0.004	0.76	0.0	0.05	13.55	0.01	2.296	6.88	0.00	4.8	95.2	0.0	-1.81	0.71	0.79	2.80	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	17028	2163	9	0	0	0	0	logfile
✔	8VUN	43534	2025-05-26	2024-01-29	4.01	4.40	4.14	4.2	0.004	0.72	0.0	0.04	16.75	0.00	2.175	13.89	0.47	13.1	86.6	0.4	-1.46	0.74	0.78	—	4.2	0.004	0.72	0.0	0.04	13.20	0.00	2.507	10.87	0.00	12.9	86.8	0.3	-1.52	0.50	0.74	0.78	—	28765	3998	8	0	0	0	0	logfile
✔	8Y3W	38902	2025-05-30	2024-01-29	3.49	3.27	—	2.2	0.006	1.14	0.0	0.06	11.85	0.01	2.146	6.46	0.49	9.4	90.0	0.6	-4.65	0.76	0.58	0.59	2.2	0.003	0.74	0.0	0.04	15.07	0.00	2.398	10.78	0.78	7.2	92.5	0.3	-0.75	1.65	0.80	0.68	1.22	33586	4034	6	0	0	0	0	logfile
✔	8VUH	43530	2025-05-24	2024-01-29	4.42	4.85	4.53	4.4	0.010	0.73	0.0	0.04	13.20	0.01	2.020	19.56	0.05	13.0	86.7	0.3	-1.76	0.62	0.47	—	4.4	0.003	0.68	0.0	0.04	12.82	0.00	2.351	11.39	0.00	11.0	88.7	0.3	-1.33	0.95	0.66	0.66	—	25161	3587	8	0	0	0	0	logfile

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