Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8Y3Q	38895	2025-05-17	2024-01-29	2.98	3.14	2.96	3.2	0.003	0.55	0.0	0.04	12.96	0.00	2.176	4.85	0.00	3.3	96.7	0.0	-0.01	0.67	0.78	3.59	3.2	0.003	0.56	0.0	0.04	15.40	0.00	2.575	4.17	2.85	3.4	96.6	0.0	0.53	0.51	0.72	0.84	3.09	15738	2016	9	0	0	0	0	logfile
✔	8Y3N	38892	2025-05-09	2024-01-29	3.8	4.11	3.76	4.1	0.007	0.82	0.0	0.05	13.36	0.01	2.382	11.92	0.00	11.9	88.1	0.0	-3.00	0.45	0.80	3.56	4.1	0.005	0.71	0.0	0.05	15.55	0.01	2.590	8.67	1.97	10.5	89.5	0.0	-1.61	1.03	0.43	0.79	3.15	3694	494	4	0	0	0	0	logfile
✔	8VUS	43538	2025-05-24	2024-01-29	3.99	4.28	4.05	4.1	0.004	0.67	0.0	0.04	16.76	0.00	2.100	12.56	0.34	13.2	86.4	0.4	-2.35	0.82	0.81	1.49	4.1	0.011	0.97	0.0	0.05	17.23	0.01	2.449	14.84	6.58	17.5	81.9	0.6	-2.80	0.92	0.83	0.82	1.38	25006	3475	8	0	0	0	0	logfile
✔	8VUN	43534	2025-05-26	2024-01-29	4.01	4.40	4.14	4.2	0.004	0.72	0.0	0.04	16.75	0.00	2.175	13.89	0.47	13.1	86.6	0.4	-1.46	0.74	0.78	—	4.2	0.004	0.72	0.0	0.04	13.20	0.00	2.507	10.87	0.00	12.9	86.8	0.3	-1.52	0.50	0.74	0.78	—	28765	3998	8	0	0	0	0	logfile
✔	8VUU	43540	2025-05-26	2024-01-29	4.05	4.36	4.13	4.2	0.010	0.97	0.0	0.04	16.68	0.01	2.047	14.52	0.19	9.4	90.3	0.3	-1.91	0.68	0.68	—	4.2	0.005	0.73	0.0	0.05	13.48	0.01	2.299	10.21	0.00	10.3	89.5	0.3	-1.63	0.97	0.69	0.70	—	28618	4026	8	0	0	0	0	logfile
✘	8Y3P	38894	2025-05-18	2024-01-29	3.48	3.68	3.57	3.6	0.004	0.76	0.0	0.05	13.55	0.01	2.296	6.88	0.00	4.8	95.2	0.0	-1.81	0.71	0.79	2.80	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	17028	2163	9	0	0	0	0	logfile
✔	8Y3Y	38907	2025-05-30	2024-01-29	3.33	2.99	—	2.2	0.007	1.11	0.0	0.06	11.18	0.01	2.168	6.18	0.67	8.4	91.2	0.4	-4.50	0.71	0.48	0.56	2.1	0.003	0.74	1.0	0.04	14.77	0.00	2.361	12.16	1.24	8.2	91.8	0.0	-1.15	1.95	0.79	0.66	1.03	33586	4034	6	0	0	0	0	logfile
✔	8VUR	43537	2025-05-24	2024-01-29	3.84	4.14	3.91	4.1	0.003	0.61	0.0	0.04	16.37	0.00	2.140	8.53	0.42	11.6	88.0	0.4	-1.26	0.75	0.81	1.36	4.1	0.003	0.63	0.0	0.04	16.60	0.00	2.488	6.37	5.47	10.5	89.2	0.3	-0.77	0.28	0.75	0.83	0.98	24978	3587	6	0	0	0	0	logfile
✔	8VUJ	43531	2025-05-24	2024-01-29	3.92	4.21	3.99	4.1	0.002	0.58	0.0	0.04	16.85	0.00	2.190	8.16	0.40	11.1	88.6	0.3	-1.13	0.77	0.83	1.10	4.1	0.003	0.63	0.0	0.04	17.00	0.00	2.512	5.94	4.31	11.2	88.5	0.3	-0.97	0.25	0.77	0.83	1.12	25184	3588	8	0	0	0	0	logfile
✔	8Y3o	38893	2025-05-18	2024-01-29	2.75	3.08	2.94	3.1	0.003	0.75	0.0	0.05	13.07	0.01	2.217	6.58	0.00	4.1	95.9	0.0	-1.28	0.64	0.76	3.15	3.1	0.004	0.63	0.0	0.05	16.01	0.00	2.529	8.99	2.08	4.5	95.5	0.0	-1.09	0.36	0.62	0.77	3.05	17058	2163	9	0	0	0	0	logfile
✔	8VUH	43530	2025-05-24	2024-01-29	4.42	4.85	4.53	4.4	0.010	0.73	0.0	0.04	13.20	0.01	2.020	19.56	0.05	13.0	86.7	0.3	-1.76	0.62	0.47	—	4.4	0.003	0.68	0.0	0.04	12.82	0.00	2.351	11.39	0.00	11.0	88.7	0.3	-1.33	0.95	0.66	0.66	—	25161	3587	8	0	0	0	0	logfile
✔	8VUV	43541	2025-05-12	2024-01-29	3.69	3.94	3.73	3.9	0.003	0.63	0.0	0.04	17.33	0.00	2.159	8.86	0.11	7.7	92.1	0.2	-1.24	0.68	0.74	1.50	3.9	0.005	0.70	0.0	0.05	17.74	0.00	2.536	6.65	5.20	9.3	90.6	0.2	-1.27	0.32	0.68	0.74	1.61	8586	1154	4	0	0	0	0	logfile
✔	8RU2	19503	2025-05-16	2024-01-29	3.49	3.82	3.54	3.7	0.002	0.55	0.0	0.04	18.07	0.00	1.974	9.72	0.37	3.5	96.4	0.2	-0.23	0.71	0.73	1.08	3.7	0.003	0.63	0.0	0.04	18.19	0.00	1.975	10.19	3.05	3.9	96.0	0.1	0.24	1.33	0.72	0.76	0.84	14773	1849	8	0	6	0	0	logfile
✔	8RU0	19501	2025-05-14	2024-01-29	3.08	3.41	3.21	3.4	0.002	0.49	0.0	0.04	16.57	0.00	2.068	6.05	0.24	2.1	97.8	0.1	-0.20	0.64	0.83	2.63	3.4	0.004	0.86	1.0	0.05	16.36	0.00	1.986	5.45	2.73	3.2	96.7	0.1	0.31	1.31	0.64	0.83	2.31	11660	1476	8	0	11	0	0	logfile
✔	8VU5	43526	2025-05-10	2024-01-28	3.39	3.60	3.36	3.6	0.005	0.81	1.0	0.05	17.68	0.01	2.195	16.26	1.44	7.6	92.4	0.0	-1.20	0.67	0.73	1.46	3.6	0.005	0.70	0.0	0.04	18.04	0.01	2.510	15.08	4.49	6.9	93.1	0.0	-1.09	0.30	0.67	0.74	1.93	5616	719	3	0	0	0	0	logfile
✔	8Y32	38866	2025-05-10	2024-01-28	4.13	3.53	3.36	3.5	0.004	0.75	0.0	0.05	21.05	0.01	2.120	9.81	0.72	6.5	93.3	0.3	-1.08	0.63	0.72	—	3.5	0.003	0.65	0.0	0.04	14.62	0.00	2.453	5.69	0.14	5.3	94.4	0.3	-0.68	0.57	0.63	0.70	—	6571	791	4	0	8	0	0	logfile
✔	8Y2Q	38863	2025-05-09	2024-01-27	2.8	2.79	2.51	2.8	0.006	0.61	0.0	0.05	10.80	0.00	2.276	6.21	0.00	5.7	94.3	0.0	-2.99	0.45	0.84	7.18	2.8	0.004	0.57	0.0	0.05	14.30	0.00	2.606	4.21	6.31	5.0	95.0	0.0	-1.77	0.29	0.45	0.85	7.85	2214	330	6	0	0	0	0	logfile
✔	8Y2P	38862	2025-05-09	2024-01-27	3.2	2.83	2.78	3.2	0.011	0.84	0.0	0.06	10.62	0.00	2.214	7.54	0.00	3.8	96.2	0.0	-2.66	0.46	0.87	5.28	3.2	0.002	0.52	0.0	0.05	14.40	0.00	2.653	5.10	3.15	2.5	97.5	0.0	-1.02	0.97	0.43	0.87	3.74	2214	330	6	0	0	0	0	logfile
✔	8Y2N	38858	2025-05-11	2024-01-26	3.19	3.51	3.23	3.5	0.011	1.21	2.0	0.10	15.98	0.01	1.998	17.33	2.96	6.8	91.7	1.6	-0.68	0.56	0.74	3.61	3.5	0.003	0.61	0.0	0.04	17.19	0.00	2.326	7.82	3.33	4.7	95.0	0.2	0.62	1.24	0.59	0.78	2.42	7714	896	8	0	8	0	0	logfile
✔	8Y2i	38856	2025-05-12	2024-01-26	2.92	3.09	2.92	3.1	0.006	0.79	1.0	0.05	21.15	0.01	2.219	11.22	0.71	12.5	87.5	0.0	-2.35	0.64	0.69	1.65	3.1	0.003	0.62	0.0	0.03	21.80	0.00	2.551	9.03	2.49	9.3	90.7	0.0	-0.86	1.23	0.66	0.71	1.32	8676	723	4	143	0	0	0	logfile

• ← previous
• Page 104 of 680
• next →