Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9H5G	51884	2025-05-09	2024-10-22	2.48	2.59	2.46	2.7	0.012	1.99	0.0	0.09	10.88	0.01	2.550	0.00	0.00	6.0	94.0	0.0	-1.90	0.44	0.85	6.35	2.6	0.005	0.91	0.0	0.05	16.89	0.00	2.599	2.68	4.23	6.4	93.6	0.0	-2.79	0.65	0.45	0.89	4.11	3300	432	6	0	0	0	0	logfile
✔	9K6L	62129	2025-05-12	2024-10-22	2.77	2.29	2.78	2.1	0.004	0.77	0.0	0.05	16.44	0.01	2.090	16.17	0.31	3.3	96.7	0.0	0.62	0.73	0.75	2.26	2.0	0.004	0.66	0.0	0.04	17.41	0.00	2.448	12.73	4.29	2.5	97.5	0.0	0.57	0.41	0.77	0.78	2.12	8914	1127	6	0	1	0	0	logfile
✔	9H5J	51886	2025-05-09	2024-10-22	2.72	2.79	2.74	2.9	0.012	1.96	0.0	0.08	11.32	0.02	2.556	0.00	0.00	6.2	92.1	1.7	-2.25	0.43	0.87	6.55	2.9	0.004	0.78	0.0	0.05	17.38	0.01	2.595	4.02	2.91	5.5	94.5	0.0	-3.05	0.83	0.45	0.91	5.20	3300	432	6	0	0	0	0	logfile
✘	9E26	47439	2025-05-19	2024-10-21	2.8	3.57	—	3.3	0.005	0.53	0.0	0.05	14.68	0.00	1.886	5.82	1.07	2.9	97.1	0.0	1.74	0.83	0.69	0.71	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	18444	2532	10	0	8	0	0	logfile
✔	9E1T	47420	2025-05-13	2024-10-21	3.0	3.15	3.04	3.1	0.002	0.38	0.0	0.04	10.62	0.00	2.108	5.74	0.00	2.7	97.3	0.0	0.55	0.72	0.79	3.41	3.1	0.004	0.65	0.0	0.04	15.81	0.00	2.033	8.85	1.76	4.4	95.6	0.0	0.03	2.75	0.74	0.80	3.18	10032	1204	4	2	2	0	0	logfile
✔	9E25	47436	2025-05-19	2024-10-21	3.2	3.94	—	3.7	0.003	0.46	0.0	0.04	13.78	0.00	1.991	5.24	0.06	4.1	95.9	0.0	1.28	0.84	0.70	-0.08	3.7	0.003	0.70	0.0	0.05	15.88	0.00	2.384	11.14	2.36	2.7	97.3	0.0	1.13	1.40	0.91	0.87	1.34	18180	2532	6	0	0	0	0	logfile
✔	9E24	47433	2025-05-19	2024-10-21	3.4	4.22	—	3.9	0.003	0.50	0.0	0.04	13.40	0.00	2.008	6.55	0.06	2.6	97.4	0.0	1.00	0.88	0.74	-0.32	3.8	0.004	0.77	0.0	0.05	15.62	0.00	2.476	12.48	3.66	3.3	96.7	0.0	0.61	1.40	0.92	0.86	1.83	18324	2532	6	0	0	0	0	logfile
✘	9E29	47446	2025-05-19	2024-10-21	3.3	4.22	—	3.9	0.004	0.59	0.0	0.05	15.01	0.00	1.765	10.24	0.17	5.0	95.0	0.0	0.33	0.86	0.68	0.72	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	18498	2532	12	0	12	0	0	logfile
✔	9E27	47442	2025-05-19	2024-10-21	3.2	3.80	—	3.6	0.003	0.53	0.0	0.05	14.22	0.00	1.923	8.53	0.11	4.2	95.8	0.0	1.35	0.89	0.83	2.46	3.6	0.004	0.81	1.0	0.05	15.59	0.00	2.029	8.86	2.48	3.3	96.7	0.0	0.95	0.50	0.92	0.87	2.02	18496	2532	12	0	12	0	0	logfile
✔	9K3A	62011	2025-05-17	2024-10-18	3.6	3.41	3.41	3.6	0.008	1.11	14.0	0.08	16.14	0.01	1.754	14.90	0.40	4.0	96.0	0.0	1.17	0.30	0.81	2.04	3.6	0.005	0.67	0.0	0.04	17.03	0.01	2.474	7.39	2.78	4.2	95.8	0.0	1.36	1.59	0.31	0.83	1.79	16122	2044	2	0	0	0	0	logfile
✔	9K26	61991	2025-05-12	2024-10-17	3.0	3.96	3.34	3.9	0.004	0.71	0.0	0.05	13.77	0.00	1.994	11.88	0.72	7.9	92.0	0.1	-1.03	0.64	0.64	0.07	3.8	0.004	0.89	0.0	0.04	17.01	0.00	2.327	10.15	4.55	7.0	93.0	0.0	-0.77	1.55	0.65	0.77	1.92	8967	1147	7	0	1	0	0	logfile
✔	9K27	61992	2025-05-12	2024-10-17	2.68	3.81	3.15	3.6	0.004	0.68	0.0	0.04	13.89	0.00	1.835	9.30	0.10	6.3	93.7	0.0	-0.54	0.75	0.86	2.98	3.6	0.003	0.75	0.0	0.04	16.44	0.00	2.467	7.72	2.09	5.9	94.1	0.0	0.14	1.50	0.67	0.81	2.55	9213	1167	7	0	1	0	0	logfile
✔	9K23	61988	2025-05-09	2024-10-17	2.6	2.16	2.06	3.0	0.005	0.56	0.0	0.05	13.00	0.00	2.225	5.47	0.00	4.7	95.3	0.0	-3.85	0.43	0.88	6.96	3.0	0.008	0.67	0.0	0.05	17.91	0.00	2.528	3.53	4.51	7.0	93.0	0.0	-2.94	0.38	0.44	0.88	6.86	2772	396	6	0	0	0	0	logfile
✔	9DZV	47339	2025-05-14	2024-10-17	3.27	2.56	3.33	2.1	0.003	0.57	0.0	0.04	14.17	0.00	2.235	12.36	4.33	9.7	90.3	0.0	-0.56	0.80	0.79	2.68	2.1	0.004	0.74	0.0	0.05	14.67	0.00	2.024	12.14	3.68	10.5	89.5	0.0	-1.00	0.47	0.79	0.79	2.13	11502	1431	7	0	12	0	0	logfile
✔	9K24	61989	2025-05-09	2024-10-17	3.6	2.93	2.70	4.0	0.002	0.59	0.0	0.05	17.48	0.00	2.503	11.79	0.00	12.9	87.1	0.0	-2.81	0.34	0.65	4.11	3.7	0.003	0.81	0.0	0.05	18.25	0.00	2.609	8.71	2.90	15.6	84.4	0.0	-3.47	1.49	0.38	0.71	4.38	2682	384	6	0	0	0	0	logfile
✔	9K1C	61971	2025-05-10	2024-10-16	3.2	3.44	3.16	3.5	0.002	0.92	0.0	0.04	13.74	0.00	2.213	5.89	0.00	2.2	97.8	0.0	2.36	0.64	0.76	2.57	3.5	0.003	0.57	0.0	0.04	15.40	0.00	2.463	6.04	2.36	2.7	97.3	0.0	1.60	0.41	0.59	0.78	2.33	6611	871	5	0	1	0	0	logfile
✘	9K1D	61972	2025-05-10	2024-10-16	3.34	3.51	3.17	3.5	0.020	0.72	0.0	0.07	16.97	0.00	2.183	12.57	0.27	2.5	97.5	0.0	0.87	0.69	0.81	0.92	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6892	858	5	0	6	0	0	logfile
✔	9DZ2	47323	2025-05-13	2024-10-15	3.31	3.93	3.33	3.7	0.004	0.74	0.0	0.05	14.55	0.01	2.174	10.10	0.49	6.3	93.2	0.6	-2.10	0.78	0.73	3.18	3.8	0.003	0.68	0.0	0.04	15.34	0.00	2.333	6.25	2.14	7.1	92.3	0.6	-1.61	0.73	0.76	0.79	2.92	9523	1207	8	0	0	0	0	logfile
✔	9DZ6	47325	2025-05-20	2024-10-15	3.1	3.74	3.18	3.5	0.004	0.49	0.0	0.04	11.85	0.01	1.821	5.04	0.26	2.3	97.6	0.1	2.01	0.82	0.82	3.19	3.5	0.003	0.78	0.0	0.04	13.66	0.00	1.777	3.65	0.71	1.7	98.2	0.1	2.78	0.43	0.82	0.83	2.63	20204	1226	3	0	2	0	10125	logfile
✘	9DYN	47310	2025-05-16	2024-10-14	2.44	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14391	1735	10	0	11	0	0	logfile

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