Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9DYM	47309	2025-05-17	2024-10-14	2.67	3.00	2.77	3.1	0.013	1.31	0.0	0.08	15.93	0.01	2.088	6.53	2.12	1.5	98.5	0.0	1.40	0.68	0.92	4.06	3.1	0.003	0.51	0.0	0.04	16.64	0.00	2.271	5.34	1.89	1.5	98.5	0.0	1.39	0.29	0.61	0.88	3.54	15629	1880	12	0	10	2	0	logfile
✔	9DYo	47311	2025-05-17	2024-10-14	2.57	2.82	2.58	2.9	0.003	0.45	0.0	0.03	15.83	0.00	1.984	16.88	0.86	1.2	98.8	0.0	1.52	0.65	0.88	4.00	2.9	0.003	0.49	0.0	0.04	16.46	0.00	2.332	6.94	0.98	1.8	98.2	0.0	1.33	0.24	0.62	0.87	3.48	15451	1880	10	0	6	0	0	logfile
✔	9DYL	47308	2025-05-17	2024-10-14	2.6	3.05	2.71	3.0	0.013	1.25	0.0	0.07	14.40	0.01	2.211	13.34	0.00	3.2	96.8	0.0	1.22	0.70	0.92	4.80	3.0	0.003	0.51	0.0	0.04	16.56	0.00	2.271	5.78	1.18	1.2	98.8	0.0	1.67	0.39	0.59	0.86	3.18	15645	1880	10	0	10	0	0	logfile
✔	9DYH	47304	2025-05-16	2024-10-14	3.15	3.50	3.22	3.5	0.012	1.37	0.0	0.07	15.27	0.01	1.993	8.17	1.64	1.8	98.2	0.0	1.20	0.55	0.79	3.21	3.5	0.003	0.64	0.0	0.04	16.56	0.00	2.267	11.09	1.18	3.0	97.0	0.0	1.35	1.77	0.57	0.79	2.28	14340	1735	10	0	5	0	0	logfile
✘	9DYN	47310	2025-05-16	2024-10-14	2.44	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14391	1735	10	0	11	0	0	logfile
✔	9DYK	47307	2025-05-17	2024-10-14	2.27	2.50	2.38	2.6	0.002	0.53	0.0	0.04	14.11	0.00	2.240	5.29	0.06	0.9	99.1	0.0	1.18	0.68	0.88	5.19	2.6	0.003	0.50	0.0	0.04	14.78	0.00	2.333	5.29	0.98	1.1	98.9	0.0	1.38	0.19	0.64	0.88	5.05	15486	1880	10	0	6	0	0	logfile
✘	9DYJ	47306	2025-05-16	2024-10-14	2.31	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14391	1735	10	0	11	0	0	logfile
✔	9DXA	47283	2025-05-17	2024-10-11	3.4	3.75	3.47	3.7	0.009	0.80	0.0	0.04	15.02	0.00	2.281	4.71	0.23	2.4	97.6	0.0	1.98	0.63	0.79	1.86	3.7	0.003	0.55	0.0	0.04	15.28	0.00	2.296	7.79	3.25	2.8	97.2	0.0	2.30	1.29	0.61	0.80	1.22	16291	1880	12	0	18	0	0	logfile
✔	9DXS	47297	2025-05-17	2024-10-11	3.55	4.09	3.67	4.0	0.011	1.52	0.0	0.19	20.28	0.01	2.217	4.35	0.39	11.0	88.4	0.6	-5.80	0.60	0.82	3.26	4.0	0.004	0.99	0.0	0.07	18.39	0.00	2.181	10.30	4.97	10.2	89.8	0.1	-0.63	3.16	0.63	0.85	2.01	15294	1784	14	0	43	0	0	logfile
✔	9DXM	47291	2025-05-20	2024-10-11	3.2	3.82	3.26	3.6	0.006	0.60	0.0	0.04	11.97	0.00	1.965	3.86	0.00	2.4	97.6	0.0	1.29	0.85	0.87	3.31	3.6	0.002	0.51	0.0	0.04	13.54	0.00	1.905	3.91	0.00	1.6	98.4	0.0	2.56	0.45	0.84	0.85	2.49	20203	1224	3	0	2	0	10147	logfile
✔	9DX7	47282	2025-05-17	2024-10-10	3.3	3.69	3.40	3.7	0.010	0.79	0.0	0.04	12.83	0.00	2.254	4.50	0.17	2.0	98.0	0.0	1.85	0.63	0.81	2.53	3.7	0.003	0.54	0.0	0.04	15.21	0.00	2.455	7.84	3.21	2.6	97.4	0.0	2.24	1.63	0.60	0.79	1.97	16238	1873	12	0	18	0	0	logfile
✔	9JWG	61852	2025-05-14	2024-10-10	3.47	3.90	3.74	3.8	0.007	0.99	8.0	0.06	16.67	0.01	2.010	14.53	1.68	9.0	90.6	0.4	-1.58	0.70	0.77	1.54	3.8	0.003	0.72	0.0	0.04	17.39	0.00	2.497	10.21	2.91	7.4	92.4	0.1	-0.46	0.48	0.69	0.79	1.28	11647	1456	2	0	0	0	0	logfile
✔	9DWG	47243	2025-05-16	2024-10-09	3.3	4.11	—	3.7	0.005	0.77	2.0	0.05	26.77	0.01	2.268	7.94	0.89	3.5	96.5	0.0	1.04	0.86	0.86	1.52	3.6	0.003	0.58	0.0	0.03	26.97	0.00	2.505	9.86	1.88	3.1	96.9	0.0	2.04	0.59	0.86	0.85	1.44	14535	1074	12	293	0	0	0	logfile
✔	9DWQ	47260	2025-05-28	2024-10-09	2.76	2.93	2.81	3.0	0.002	0.49	0.0	0.04	16.03	0.00	2.308	1.78	1.29	1.8	98.2	0.0	2.06	0.61	0.85	3.27	3.0	0.003	0.48	0.0	0.04	16.48	0.00	2.404	2.04	1.35	2.0	98.0	0.0	1.92	0.70	0.60	0.86	3.26	30925	1880	5	0	1	0	15384	logfile
✔	9DWH	47246	2025-05-19	2024-10-09	3.3	3.99	—	3.6	0.004	0.66	1.0	0.04	26.10	0.01	2.246	5.57	0.22	2.1	97.9	0.0	1.85	0.88	0.86	1.36	3.6	0.003	0.58	0.0	0.03	26.41	0.00	2.498	7.31	1.20	3.1	96.9	0.0	2.63	1.01	0.88	0.88	1.20	14653	1085	12	293	0	0	0	logfile
✔	9JVG	61838	2025-05-11	2024-10-09	2.76	3.38	2.79	3.2	0.008	0.79	2.0	0.05	12.56	0.00	1.644	10.65	0.38	5.6	94.4	0.0	-0.72	0.69	0.75	2.63	3.2	0.003	0.67	0.0	0.04	15.83	0.00	2.453	8.60	2.39	3.0	97.0	0.0	0.23	0.60	0.67	0.76	2.67	8396	1151	5	0	0	0	0	logfile
✘	9DWE	47241	2025-05-18	2024-10-09	2.8	3.10	2.94	3.1	0.005	0.83	0.0	0.05	14.21	0.01	1.485	3.75	0.00	2.8	97.2	0.0	-0.83	0.72	0.87	4.41	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	17400	2187	15	0	21	0	3	logfile
✔	9DWF	47242	2025-05-17	2024-10-09	3.1	3.23	3.16	3.2	0.004	0.62	0.0	0.04	27.53	0.00	2.230	4.33	0.00	1.2	98.8	0.0	1.00	0.80	0.86	3.75	3.2	0.004	0.56	0.0	0.03	28.29	0.00	2.541	6.84	1.93	1.9	98.1	0.0	2.52	0.56	0.82	0.90	3.40	11949	749	11	293	0	0	0	logfile
✔	9DWN	47258	2025-05-09	2024-10-09	3.2	2.91	3.15	3.3	0.004	0.63	0.0	0.04	14.43	0.00	2.165	6.64	0.45	2.6	97.4	0.0	2.60	0.56	0.80	3.93	3.3	0.003	0.49	0.0	0.04	14.66	0.00	2.521	6.17	1.35	2.4	97.6	0.0	4.11	0.26	0.54	0.82	3.79	4325	540	6	0	9	2	0	logfile
✔	9DWL	47254	2025-05-17	2024-10-09	3.9	4.63	4.02	4.0	0.005	0.73	0.0	0.04	27.70	0.01	2.297	7.08	0.65	1.7	98.3	0.0	1.14	0.89	0.86	2.02	4.0	0.005	0.68	0.0	0.03	28.00	0.00	2.094	12.14	3.08	3.4	96.6	0.0	2.17	0.52	0.90	0.87	1.37	11877	742	11	293	0	0	0	logfile

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