Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9D0A	46448	2025-05-11	2024-08-06	3.1	2.47	3.18	2.2	0.003	0.53	0.0	0.04	14.27	0.00	2.264	7.74	0.00	4.3	95.7	0.0	-0.63	0.77	0.75	2.83	2.2	0.004	0.69	0.0	0.05	15.79	0.00	2.507	10.44	2.88	4.5	95.5	0.0	-0.04	0.50	0.76	0.74	1.63	8416	1083	5	0	0	0	0	logfile
✔	9J1P	61077	2025-05-12	2024-08-05	2.99	3.44	3.04	3.4	0.003	0.53	0.0	0.04	18.17	0.00	2.191	8.27	2.89	5.8	94.2	0.0	0.94	0.62	0.80	1.82	3.4	0.003	0.58	0.0	0.04	18.06	0.00	2.460	6.48	3.78	5.8	94.2	0.0	0.88	0.24	0.62	0.80	1.62	9385	1186	6	0	0	0	0	logfile
✔	9CZi	46417	2025-05-10	2024-08-05	3.0	3.03	2.87	3.0	0.021	1.92	0.0	0.10	9.10	0.01	2.435	0.79	0.00	7.0	93.0	0.0	-1.72	0.38	0.80	5.58	3.0	0.004	0.67	0.0	0.05	18.43	0.00	2.522	6.95	1.41	4.9	95.1	0.0	-2.15	1.28	0.47	0.87	4.72	5570	730	10	0	0	0	0	logfile
✔	9CZL	46420	2025-05-10	2024-08-05	2.9	3.25	2.66	3.2	0.023	1.95	0.0	0.09	9.53	0.01	2.463	0.52	0.00	5.6	94.4	0.0	-1.27	0.54	0.85	5.46	3.2	0.005	0.77	0.0	0.05	17.12	0.00	2.581	4.15	1.54	6.8	93.2	0.0	-1.73	1.67	0.45	0.84	5.31	5660	740	10	0	0	0	0	logfile
✔	9CZN	46422	2025-05-10	2024-08-05	2.6	2.70	2.55	2.7	0.020	1.90	0.0	0.12	13.57	0.01	2.563	0.00	0.00	4.7	95.3	0.0	-0.35	0.44	0.79	6.66	2.7	0.006	0.71	0.0	0.06	19.24	0.00	2.613	8.15	1.60	5.2	94.8	0.0	-1.20	3.21	0.56	0.88	5.45	5020	680	20	0	0	0	0	logfile
✔	9J1L	61075	2025-05-20	2024-08-05	3.28	3.58	3.52	3.5	0.004	0.61	0.0	0.04	18.18	0.00	2.090	17.79	0.27	6.0	93.4	0.6	-0.60	0.59	0.81	1.28	3.5	0.006	0.68	0.0	0.04	18.60	0.00	2.146	13.43	3.84	7.7	91.7	0.6	-0.92	0.42	0.60	0.82	1.41	20288	2598	17	0	2	0	0	logfile
✔	9J1J	61073	2025-05-20	2024-08-05	3.42	4.26	3.58	3.9	0.004	0.83	0.0	0.05	17.34	0.00	2.057	15.01	0.33	6.6	93.1	0.3	-1.07	0.84	0.85	1.27	3.9	0.004	0.74	0.0	0.05	17.82	0.00	2.528	10.75	2.92	6.9	92.8	0.3	-0.64	0.49	0.84	0.86	1.76	19944	2616	18	0	0	0	0	logfile
✔	9CZP	46424	2025-05-10	2024-08-05	3.3	3.59	3.28	3.5	0.021	2.01	0.0	0.11	10.68	0.01	2.402	0.40	0.00	7.0	93.0	0.0	-0.29	0.47	0.84	6.05	3.5	0.005	0.64	0.0	0.06	16.76	0.00	2.558	10.44	3.40	9.5	90.5	0.0	-1.43	1.61	0.42	0.84	4.71	5020	680	20	0	0	0	0	logfile
✔	9GD1	51241	2025-05-25	2024-08-04	4.0	5.21	—	3.9	0.006	0.82	0.0	0.06	25.61	0.01	2.052	7.21	0.39	1.4	98.6	0.0	-0.53	0.91	0.87	—	3.9	0.007	0.74	0.0	0.04	25.90	0.00	0.977	15.11	1.60	2.5	97.5	0.0	1.05	0.66	0.92	0.88	—	27555	2098	18	518	3	0	0	logfile
✔	9GD3	51247	2025-05-19	2024-08-04	3.0	3.49	2.92	3.1	0.006	0.85	0.0	0.06	24.31	0.01	2.176	1.23	0.07	2.2	97.8	0.0	-0.07	0.78	0.74	3.10	3.1	0.003	0.62	0.0	0.03	23.95	0.00	1.251	6.42	1.06	2.0	98.0	0.0	2.26	1.08	0.86	0.89	2.61	19030	1630	13	284	3	0	0	logfile
✔	9GD2	51244	2025-05-25	2024-08-04	4.2	6.40	—	3.9	0.006	0.86	0.0	0.06	25.64	0.01	2.148	7.94	0.94	1.7	98.3	0.0	-0.58	0.92	0.85	—	3.9	0.004	0.64	0.0	0.04	25.24	0.00	1.227	13.32	0.00	2.0	98.0	0.0	1.50	0.66	0.92	0.86	—	26638	2104	22	474	3	0	0	logfile
✔	9GD0	51238	2025-05-20	2024-08-04	2.8	3.26	—	3.0	0.006	0.84	0.0	0.05	27.26	0.01	2.229	4.41	0.00	0.5	99.5	0.0	-0.62	0.86	0.82	3.22	3.0	0.004	0.63	0.0	0.03	28.00	0.00	2.409	7.11	2.57	1.5	98.5	0.0	2.54	1.33	0.88	0.86	2.02	20207	1253	16	500	0	0	0	logfile
✔	9J12	61065	2025-05-11	2024-08-03	3.9	4.27	4.12	4.3	0.003	0.86	1.0	0.04	14.03	0.01	2.142	10.98	0.00	8.0	92.0	0.0	-2.39	0.57	0.76	1.08	4.3	0.003	0.76	0.0	0.04	15.47	0.00	2.488	8.65	3.42	5.6	94.4	0.0	-1.04	0.67	0.57	0.77	1.16	7441	1007	2	0	0	0	0	logfile
✔	9CZ3	46060	2025-05-10	2024-08-03	2.7	3.45	2.66	2.2	0.020	1.86	0.0	0.12	25.03	0.02	2.701	0.17	0.00	1.1	98.9	0.0	2.48	0.56	0.81	5.99	2.3	0.100	2.85	0.0	0.16	29.74	0.01	1.743	51.09	20.00	11.1	88.9	0.0	-1.37	3.79	0.58	0.82	3.60	5580	270	90	0	90	0	3150	logfile
✔	9J10	61064	2025-05-16	2024-08-03	2.43	3.10	2.37	2.7	0.007	1.16	0.0	0.06	14.36	0.01	1.057	10.98	0.00	4.1	95.9	0.0	-4.12	0.68	0.87	3.99	2.7	0.004	0.66	0.0	0.04	15.20	0.00	2.542	5.27	0.74	3.9	96.1	0.0	0.24	0.58	0.68	0.89	3.70	14816	1780	10	0	4	4	0	logfile
✔	9J16	61069	2025-05-11	2024-08-03	3.4	3.63	3.45	3.6	0.007	0.97	0.0	0.06	9.60	0.01	2.342	1.46	0.00	8.2	91.8	0.0	-6.55	0.61	0.83	2.92	3.6	0.002	0.66	0.0	0.04	14.66	0.00	2.545	3.72	1.52	6.1	93.9	0.0	-0.24	0.70	0.63	0.85	1.91	7458	1008	6	2	0	2	0	logfile
✔	9J17	61070	2025-05-10	2024-08-03	3.4	3.79	3.56	3.9	0.003	1.11	8.0	0.09	15.66	0.00	1.191	10.78	0.54	9.4	90.6	0.0	-1.32	0.56	0.79	2.07	3.9	0.003	0.60	0.0	0.04	16.53	0.00	2.469	5.60	3.49	9.4	90.6	0.0	-0.33	0.38	0.59	0.81	2.48	7052	944	4	0	2	0	0	logfile
✔	9J0Y	61062	2025-05-13	2024-08-03	3.14	3.39	3.13	3.4	0.006	0.99	0.0	0.06	14.83	0.01	1.596	4.14	0.00	8.2	91.8	0.0	-5.36	0.62	0.86	3.58	3.4	0.003	0.70	0.0	0.04	16.05	0.00	2.503	6.24	1.98	7.5	92.5	0.0	-0.81	0.61	0.61	0.87	2.75	10936	1300	5	0	4	0	0	logfile
✔	9J0X	61061	2025-05-21	2024-08-03	3.0	3.56	3.04	3.5	0.005	1.03	4.0	0.06	13.89	0.01	1.217	8.65	0.00	9.1	90.9	0.0	-4.85	0.70	0.83	2.71	3.5	0.003	0.75	0.0	0.04	15.85	0.00	2.394	8.06	1.88	8.2	91.8	0.0	-1.17	0.62	0.70	0.85	2.41	22042	2714	6	0	4	0	0	logfile
✔	9J14	61067	2025-05-11	2024-08-03	3.49	3.71	3.52	3.8	0.004	0.81	0.0	0.04	16.00	0.00	1.674	9.86	0.26	10.9	89.1	0.0	-0.73	0.62	0.82	1.41	3.8	0.003	0.63	0.0	0.04	16.11	0.00	2.454	5.07	3.66	11.1	88.9	0.0	-0.09	0.55	0.65	0.84	2.16	7218	970	4	0	2	0	0	logfile

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