Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9J18	61071	2025-05-10	2024-08-03	3.5	3.78	3.57	3.9	0.005	0.93	4.0	0.06	15.23	0.00	2.105	10.02	0.55	10.8	89.2	0.0	-1.88	0.58	0.80	1.48	3.9	0.002	0.68	0.0	0.04	15.59	0.00	2.360	5.12	3.01	10.1	89.9	0.0	-0.79	1.18	0.56	0.78	1.02	6944	930	4	0	2	0	0	logfile
✔	9J14	61067	2025-05-11	2024-08-03	3.49	3.71	3.52	3.8	0.004	0.81	0.0	0.04	16.00	0.00	1.674	9.86	0.26	10.9	89.1	0.0	-0.73	0.62	0.82	1.41	3.8	0.003	0.63	0.0	0.04	16.11	0.00	2.454	5.07	3.66	11.1	88.9	0.0	-0.09	0.55	0.65	0.84	2.16	7218	970	4	0	2	0	0	logfile
✔	9J0Y	61062	2025-05-13	2024-08-03	3.14	3.39	3.13	3.4	0.006	0.99	0.0	0.06	14.83	0.01	1.596	4.14	0.00	8.2	91.8	0.0	-5.36	0.62	0.86	3.58	3.4	0.003	0.70	0.0	0.04	16.05	0.00	2.503	6.24	1.98	7.5	92.5	0.0	-0.81	0.61	0.61	0.87	2.75	10936	1300	5	0	4	0	0	logfile
✔	9J10	61064	2025-05-16	2024-08-03	2.43	3.10	2.37	2.7	0.007	1.16	0.0	0.06	14.36	0.01	1.057	10.98	0.00	4.1	95.9	0.0	-4.12	0.68	0.87	3.99	2.7	0.004	0.66	0.0	0.04	15.20	0.00	2.542	5.27	0.74	3.9	96.1	0.0	0.24	0.58	0.68	0.89	3.70	14816	1780	10	0	4	4	0	logfile
✔	9CYT	46049	2025-05-30	2024-08-02	3.7	3.06	3.50	3.0	0.004	0.63	0.0	0.05	14.10	0.01	2.137	6.34	0.21	4.0	96.0	0.0	-0.18	0.41	0.78	2.33	3.0	0.005	0.61	0.0	0.05	15.80	0.01	2.419	4.92	1.62	4.3	95.7	0.0	-0.18	0.30	0.41	0.78	1.96	33991	4390	10	0	0	0	0	logfile
✔	9GCK	51231	2025-05-14	2024-08-02	3.7	4.29	3.77	3.0	0.015	1.89	4.0	0.12	21.02	0.01	1.954	10.65	0.77	5.0	94.7	0.2	-2.69	0.82	0.70	0.99	2.8	0.006	0.83	0.0	0.05	21.25	0.01	2.466	23.40	1.96	5.1	94.8	0.1	-0.75	3.54	0.80	0.63	0.45	12298	1287	6	90	0	0	0	logfile
✔	9GCM	51234	2025-05-10	2024-08-02	3.1	3.68	3.12	3.3	0.004	0.65	0.0	0.03	20.80	0.01	2.142	16.26	0.93	3.2	96.2	0.5	-0.05	0.80	0.79	2.49	3.3	0.004	0.69	0.0	0.04	20.56	0.00	2.197	11.92	2.48	4.3	95.1	0.5	0.30	0.51	0.80	0.80	2.15	4466	377	4	66	0	0	0	logfile
✔	9GCU	51237	2025-05-20	2024-08-02	2.8	3.33	2.68	3.1	0.003	0.67	0.0	0.04	13.27	0.00	2.040	12.45	0.09	2.0	98.0	0.0	0.35	0.86	0.85	2.65	3.1	0.004	0.92	1.0	0.06	15.70	0.00	1.635	11.39	1.21	2.0	97.9	0.0	0.62	0.50	0.87	0.88	2.59	20023	2508	16	0	10	83	0	logfile
✔	9iZW	61044	2025-05-16	2024-08-01	3.12	3.31	3.20	3.3	0.003	0.53	1.0	0.04	14.73	0.00	1.895	3.90	1.34	4.6	95.4	0.0	-3.87	0.61	0.62	1.15	3.3	0.003	0.69	0.0	0.04	16.65	0.00	2.466	9.40	3.65	6.2	93.8	0.0	-1.24	0.69	0.72	0.81	1.53	15196	1996	4	0	0	0	0	logfile
✔	9iZX	61045	2025-05-16	2024-08-01	3.0	4.21	3.05	3.5	0.002	0.51	0.0	0.04	8.95	0.00	1.332	4.11	0.46	2.3	97.6	0.1	-0.23	0.85	0.69	1.91	3.6	0.004	0.82	0.0	0.05	13.79	0.00	2.522	11.48	2.23	3.5	96.4	0.1	1.03	2.61	0.90	0.86	1.77	14152	1857	4	0	0	0	0	logfile
✔	9iZV	61043	2025-05-16	2024-08-01	3.02	4.37	3.10	3.6	0.002	0.48	0.0	0.04	8.21	0.00	1.991	5.46	0.20	2.0	98.0	0.0	-0.72	0.81	0.62	1.19	3.7	0.003	0.78	0.0	0.05	14.00	0.00	2.366	12.29	2.50	4.1	95.9	0.0	0.40	1.22	0.90	0.82	1.11	14118	1857	4	0	0	0	0	logfile
✔	9GC3	51228	2025-05-16	2024-08-01	2.46	3.18	2.52	2.9	0.013	1.54	3.0	0.11	18.38	0.01	2.311	1.26	0.00	2.2	97.8	0.0	-0.68	0.92	0.93	5.50	2.9	0.003	0.55	0.0	0.04	18.10	0.00	2.510	4.15	0.73	1.3	98.7	0.0	0.75	1.01	0.88	0.90	4.15	15046	1673	5	80	0	0	0	logfile
✔	9iZU	61042	2025-05-10	2024-08-01	3.7	4.91	3.67	3.8	0.002	0.45	0.0	0.04	7.95	0.00	2.095	5.25	0.13	1.4	98.6	0.0	-0.47	0.51	0.15	0.72	3.9	0.004	0.83	0.0	0.05	13.67	0.01	2.546	19.17	1.70	5.6	94.4	0.0	-0.41	2.90	0.69	0.48	-0.07	7105	933	2	0	0	0	0	logfile
✔	9CY4	46006	2025-05-10	2024-08-01	3.41	3.58	3.45	3.6	0.006	1.21	5.0	0.09	15.13	0.01	2.310	3.97	0.00	3.9	96.1	0.0	-3.09	0.58	0.73	1.85	3.6	0.004	0.73	1.0	0.05	16.43	0.01	2.574	10.65	2.73	4.5	95.5	0.0	0.84	1.25	0.62	0.78	1.23	5183	672	3	0	1	0	0	logfile
✔	9CY3	46005	2025-05-10	2024-08-01	3.2	3.35	3.19	3.3	0.005	0.96	0.0	0.06	14.28	0.01	2.331	3.67	0.00	3.1	96.9	0.0	-1.30	0.59	0.70	1.72	3.3	0.002	0.60	0.0	0.04	15.66	0.00	2.494	8.13	1.48	3.3	96.7	0.0	1.25	1.24	0.62	0.74	1.59	5078	653	3	0	1	0	0	logfile
✔	9CY1	46004	2025-05-10	2024-08-01	3.15	3.48	3.25	3.4	0.005	0.91	0.0	0.05	13.40	0.01	2.269	3.69	0.00	2.7	97.3	0.0	-0.80	0.61	0.78	2.30	3.4	0.003	0.53	0.0	0.04	15.45	0.00	2.557	5.99	2.57	3.3	96.7	0.0	1.53	0.52	0.60	0.81	2.70	5026	649	2	0	0	0	0	logfile
✘	9CXB	45984	2025-05-16	2024-07-31	3.33	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14479	1749	16	0	22	0	0	logfile
✔	9iZ0	61006	2025-05-29	2024-07-31	3.63	3.94	3.73	3.8	0.004	0.73	1.0	0.04	17.04	0.00	2.148	13.83	1.29	5.9	93.8	0.2	0.48	0.70	0.62	0.81	3.8	0.010	0.74	0.0	0.04	16.78	0.00	2.432	10.68	4.42	5.9	94.1	0.1	0.56	1.13	0.71	0.63	0.49	32048	4862	5	0	2	0	0	logfile
✔	9CXJ	45993	2025-05-13	2024-07-31	3.1	3.43	3.22	3.5	0.006	0.75	0.0	0.05	14.80	0.01	1.970	5.94	1.42	3.0	97.0	0.0	-0.11	0.65	0.76	3.21	3.5	0.003	0.61	0.0	0.04	16.55	0.00	1.998	9.14	2.04	3.2	96.8	0.0	1.56	1.22	0.65	0.75	2.01	10227	1237	6	0	4	0	0	logfile
✔	9GBV	51222	2025-05-29	2024-07-31	2.32	3.81	—	1.7	0.002	0.44	0.0	0.04	18.69	0.00	2.243	3.96	0.18	2.6	97.4	0.0	0.74	0.92	0.84	3.84	1.8	0.004	0.53	0.0	0.04	19.56	0.00	2.331	3.73	0.18	3.6	96.4	0.0	0.88	0.25	0.93	0.88	3.48	31890	3236	8	318	2	0	0	logfile

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