Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9CXJ	45993	2025-05-13	2024-07-31	3.1	3.43	3.22	3.5	0.006	0.75	0.0	0.05	14.80	0.01	1.970	5.94	1.42	3.0	97.0	0.0	-0.11	0.65	0.76	3.21	3.5	0.003	0.61	0.0	0.04	16.55	0.00	1.998	9.14	2.04	3.2	96.8	0.0	1.56	1.22	0.65	0.75	2.01	10227	1237	6	0	4	0	0	logfile
✔	9iYX	61003	2025-05-09	2024-07-31	3.6	3.14	2.42	3.2	0.005	0.79	1.0	0.04	12.81	0.01	2.132	11.46	0.40	2.7	97.3	0.0	1.26	0.44	0.67	2.43	3.2	0.003	0.65	0.0	0.04	14.99	0.01	2.612	6.52	4.35	1.8	98.2	0.0	3.30	1.64	0.45	0.70	2.22	2626	351	4	0	2	0	0	logfile
✔	9CX9	45982	2025-05-10	2024-07-31	3.34	3.58	3.32	3.5	0.003	0.67	0.0	0.04	14.88	0.00	2.285	7.59	0.21	2.7	97.3	0.0	-0.81	0.77	0.77	2.41	3.5	0.004	0.67	0.0	0.05	16.30	0.00	2.567	6.27	6.50	4.0	96.0	0.0	-0.97	0.47	0.80	0.81	2.17	4631	609	5	0	0	0	0	logfile
✔	9iZ0	61006	2025-05-29	2024-07-31	3.63	3.94	3.73	3.8	0.004	0.73	1.0	0.04	17.04	0.00	2.148	13.83	1.29	5.9	93.8	0.2	0.48	0.70	0.62	0.81	3.8	0.010	0.74	0.0	0.04	16.78	0.00	2.432	10.68	4.42	5.9	94.1	0.1	0.56	1.13	0.71	0.63	0.49	32048	4862	5	0	2	0	0	logfile
✔	9CX3	45977	2025-05-10	2024-07-30	3.47	3.60	3.42	3.5	0.005	0.71	0.0	0.04	15.76	0.00	2.201	11.22	0.16	5.2	94.8	0.0	-1.54	0.72	0.67	1.75	3.5	0.004	0.72	0.0	0.04	16.97	0.00	2.498	12.66	5.09	5.9	94.1	0.0	-1.80	0.55	0.74	0.71	2.22	5626	720	6	0	0	0	0	logfile
✔	9iY8	60990	2025-05-12	2024-07-30	3.01	2.61	3.04	3.1	0.003	0.79	0.0	0.05	16.61	0.01	2.102	16.87	0.30	4.4	95.6	0.0	0.01	0.82	0.83	1.96	3.1	0.004	0.75	0.0	0.05	17.08	0.00	2.482	12.46	4.92	4.7	95.3	0.0	0.06	0.41	0.82	0.83	1.93	9014	1141	5	0	0	0	0	logfile
✔	9iXM	60973	2025-05-21	2024-07-29	3.26	3.36	—	3.2	0.004	0.95	14.0	0.06	20.10	0.01	1.655	16.20	1.97	4.6	94.7	0.7	-0.47	0.86	0.82	1.88	3.2	0.004	0.57	0.0	0.04	19.97	0.00	2.009	7.82	1.93	4.0	95.7	0.3	0.68	0.51	0.88	0.86	2.39	20925	2403	7	75	1	0	0	logfile
✔	9iXX	60980	2025-05-12	2024-07-29	3.15	3.09	2.95	3.2	0.008	0.65	0.0	0.04	9.06	0.00	1.977	7.09	0.30	1.6	98.4	0.0	-1.89	0.41	0.57	1.04	3.2	0.003	0.61	0.0	0.04	14.00	0.00	2.483	6.98	3.15	3.1	96.9	0.0	0.26	0.96	0.58	0.80	2.49	9036	1141	6	0	1	0	0	logfile
✔	9CVC	45959	2025-05-15	2024-07-29	3.5	3.85	3.64	3.7	0.004	0.69	0.0	0.04	14.29	0.01	2.041	14.29	0.00	7.4	92.3	0.3	-0.15	0.70	0.69	1.41	3.7	0.003	0.69	0.0	0.04	16.50	0.00	2.501	8.76	1.30	5.1	94.9	0.0	0.80	0.64	0.71	0.73	1.29	12564	1572	5	0	0	0	0	logfile
✔	9CV6	45956	2025-05-14	2024-07-28	3.12	3.70	3.15	3.6	0.004	0.85	0.0	0.06	11.33	0.01	2.314	3.62	0.00	2.3	97.7	0.0	-1.51	0.87	0.87	4.36	3.5	0.003	0.58	0.0	0.04	13.70	0.00	2.511	4.29	0.79	2.8	97.2	0.0	0.98	1.13	0.84	0.88	3.17	12030	1520	2	0	0	0	0	logfile
✔	9GA3	51170	2025-05-19	2024-07-26	4.3	8.47	4.38	4.2	0.004	0.72	0.0	0.04	19.76	0.01	2.224	15.69	1.97	8.4	91.6	0.0	-1.90	0.90	0.78	—	4.3	0.004	0.79	0.0	0.05	18.65	0.01	2.359	31.01	0.00	8.5	91.5	0.0	-1.39	1.73	0.90	0.78	—	18691	2207	7	79	7	0	0	logfile
✔	9GA4	51173	2025-05-24	2024-07-26	3.7	4.90	—	3.6	0.007	0.91	0.0	0.04	19.30	0.01	2.261	19.55	0.16	6.0	94.0	0.0	-1.38	0.77	0.52	0.31	3.6	0.004	0.84	0.0	0.05	19.94	0.01	2.196	32.03	4.89	9.0	90.9	0.1	-2.13	1.10	0.79	0.60	0.12	24900	3005	8	74	4	0	0	logfile
✔	9CUi	45934	2025-05-22	2024-07-26	3.42	3.67	3.48	3.7	0.011	1.43	1.0	0.06	15.90	0.01	2.183	5.04	0.39	11.3	88.2	0.5	-6.40	0.71	0.79	2.59	3.7	0.003	0.74	0.0	0.04	16.13	0.00	1.859	8.22	2.00	10.8	89.2	0.0	-1.28	0.73	0.72	0.82	1.88	22713	2650	10	0	62	0	0	logfile
✔	9CUK	45936	2025-05-22	2024-07-26	3.26	3.55	3.38	3.6	0.013	1.37	0.0	0.06	16.40	0.01	2.269	4.36	0.44	10.0	89.7	0.3	-6.36	0.64	0.82	3.52	3.6	0.003	0.70	0.0	0.04	16.01	0.00	2.219	6.43	2.10	9.0	90.9	0.2	-0.08	1.14	0.65	0.85	2.47	22531	2635	11	0	62	1	0	logfile
✔	9iX4	60964	2025-05-20	2024-07-26	2.96	3.46	2.99	3.3	0.006	0.73	1.0	0.05	17.46	0.00	2.214	11.95	1.02	5.4	94.2	0.4	-0.28	0.81	0.83	2.95	3.3	0.003	0.61	0.0	0.04	18.36	0.00	2.443	7.69	1.02	3.9	96.1	0.0	0.72	1.41	0.80	0.84	2.41	19997	2348	8	45	2	0	0	logfile
✔	9GA2	51169	2025-05-13	2024-07-26	4.9	9.45	6.14	8.0	0.003	0.75	0.0	0.05	14.55	0.00	2.525	15.89	1.64	4.8	95.2	0.0	-0.08	0.89	0.77	—	8.1	0.002	0.61	0.0	0.04	13.24	0.00	2.414	17.40	0.09	4.8	95.2	0.0	0.05	1.07	0.91	0.80	—	10239	1343	4	0	3	0	0	logfile
✔	9GA5	51174	2025-05-16	2024-07-26	3.2	4.30	3.30	3.6	0.004	0.84	1.0	0.05	20.06	0.00	1.844	17.70	0.23	5.6	94.4	0.0	-0.04	0.91	0.86	1.31	3.6	0.004	0.73	0.0	0.04	20.62	0.00	2.468	11.22	2.07	5.8	94.2	0.0	0.16	0.36	0.91	0.87	1.15	13715	1594	6	71	6	0	0	logfile
✘	9CUJ	45935	2025-05-21	2024-07-26	2.78	2.95	2.81	3.0	0.011	1.39	0.0	0.05	17.60	0.01	2.291	5.23	1.51	4.3	95.7	0.0	-5.66	0.60	0.82	4.84	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21557	2440	12	0	65	72	0	logfile
✔	9CUH	45933	2025-05-21	2024-07-26	3.03	3.20	3.01	3.2	0.014	1.53	0.0	0.06	17.81	0.01	2.295	4.45	1.16	6.3	93.5	0.2	-5.89	0.68	0.83	4.17	3.2	0.002	0.62	0.0	0.04	16.05	0.00	2.429	6.21	1.11	3.9	96.1	0.0	0.47	0.59	0.73	0.86	2.47	20877	2376	12	0	49	72	0	logfile
✘	9CTQ	45915	2025-05-17	2024-07-25	2.41	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15630	1880	10	0	10	0	0	logfile

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