Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9L7M	62874	2025-05-17	2024-12-26	3.48	3.59	3.39	3.6	0.026	1.54	0.0	0.08	19.06	0.01	1.616	27.17	6.83	17.9	81.5	0.6	-6.00	0.62	0.74	1.49	3.5	0.004	1.11	2.0	0.04	18.13	0.00	1.935	8.32	2.68	3.8	96.1	0.0	-1.31	1.71	0.65	0.81	2.24	16181	2047	9	0	8	0	0	logfile
✔	9HVC	52431	2025-05-09	2024-12-26	2.24	2.61	2.27	2.8	0.006	1.61	0.0	0.04	19.50	0.01	2.184	4.45	0.00	0.0	100.0	0.0	2.75	0.18	0.58	1.04	2.6	0.003	0.42	0.0	0.04	17.42	0.00	2.617	5.34	1.96	0.0	100.0	0.0	3.79	1.00	0.25	0.85	3.53	578	69	2	0	1	31	0	logfile
✘	9MNY	48443	2025-05-10	2024-12-24	2.78	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	5332	675	7	0	1	0	0	logfile
✔	9MNZ	48444	2025-05-10	2024-12-24	2.73	2.24	2.80	2.0	0.020	1.50	0.0	0.09	14.22	0.01	2.151	11.27	0.70	11.5	88.5	0.0	-3.42	0.77	0.76	3.58	2.1	0.002	0.65	0.0	0.04	15.99	0.00	1.970	4.89	1.58	4.3	95.7	0.0	-0.85	0.39	0.78	0.78	2.86	5382	682	7	0	1	0	0	logfile
✔	9MNX	48442	2025-05-10	2024-12-24	3.11	2.25	3.05	2.0	0.021	1.47	0.0	0.09	14.42	0.01	2.195	12.07	0.54	13.6	86.4	0.0	-4.29	0.77	0.78	3.33	2.1	0.005	0.73	0.0	0.04	15.17	0.01	1.951	7.92	0.36	6.0	94.0	0.0	-2.37	0.34	0.76	0.80	2.61	5240	663	7	0	1	0	0	logfile
✔	9L6C	62852	2025-05-12	2024-12-24	3.33	2.45	3.21	2.2	0.002	0.58	0.0	0.04	15.30	0.00	2.255	6.93	0.27	5.5	94.2	0.3	-1.01	0.69	0.74	2.79	2.1	0.006	1.05	1.0	0.05	15.94	0.01	2.532	7.24	3.16	7.3	92.4	0.2	-1.12	0.32	0.70	0.77	3.27	6766	874	8	0	2	0	0	logfile
✘	9MNH	48423	2025-05-13	2024-12-21	4.03	4.35	3.39	4.1	0.005	1.08	0.0	0.06	13.65	0.01	2.267	3.96	0.16	7.5	92.4	0.1	-2.41	0.84	0.83	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10875	1383	12	0	30	0	0	logfile
✔	9MMV	48404	2025-05-10	2024-12-20	3.79	2.98	3.74	1.4	0.004	0.82	0.0	0.05	15.10	0.01	1.340	10.87	1.08	3.5	96.2	0.2	1.43	0.89	0.84	2.37	1.5	0.005	0.70	0.0	0.04	15.19	0.00	2.530	7.05	6.20	4.9	95.0	0.1	0.70	0.61	0.90	0.84	2.28	4968	837	4	0	0	0	0	logfile
✔	9L3W	62793	2025-05-11	2024-12-19	3.5	2.25	—	1.6	0.002	0.51	0.0	0.04	12.79	0.00	2.121	6.73	0.00	3.0	97.0	0.0	0.72	0.71	0.73	2.13	1.6	0.003	0.55	0.0	0.04	15.21	0.00	2.607	6.31	2.89	3.5	96.5	0.0	0.55	0.41	0.72	0.74	2.18	7262	983	5	0	0	0	0	logfile
✔	9L3Z	62799	2025-05-10	2024-12-19	3.9	2.91	3.66	4.0	0.003	0.54	0.0	0.04	14.17	0.00	1.337	6.84	0.21	6.1	93.9	0.0	-0.34	0.69	0.71	1.68	4.0	0.003	0.67	0.0	0.04	15.87	0.01	2.547	8.08	5.29	6.4	93.6	0.0	0.42	1.24	0.71	0.74	1.96	5147	733	5	0	1	0	0	logfile
✔	9L3Y	62798	2025-05-11	2024-12-19	3.6	2.31	—	1.7	0.002	0.57	0.0	0.04	12.95	0.00	2.172	8.54	0.00	7.3	92.6	0.1	0.06	0.72	0.70	1.85	1.7	0.003	0.64	0.0	0.04	15.63	0.00	2.592	6.93	2.74	8.2	91.7	0.1	-0.17	0.45	0.73	0.73	2.39	7383	993	5	0	0	0	0	logfile
✔	9L2E	62773	2025-05-12	2024-12-17	2.46	2.57	2.45	2.6	0.003	0.58	0.0	0.04	20.56	0.00	2.047	14.23	1.81	2.2	97.8	0.0	1.27	0.64	0.78	2.26	2.6	0.003	0.54	0.0	0.04	20.61	0.00	2.503	9.68	3.43	1.6	98.4	0.0	1.84	0.31	0.66	0.80	2.33	9064	1112	8	0	0	0	0	logfile
✔	9MK9	48323	2025-05-10	2024-12-16	3.22	3.42	3.26	3.4	0.005	0.73	0.0	0.04	16.38	0.00	2.201	6.92	2.34	3.7	96.3	0.0	0.35	0.76	0.84	1.54	3.4	0.003	0.59	0.0	0.04	18.02	0.00	2.510	5.80	1.65	4.0	96.0	0.0	1.64	1.83	0.75	0.84	0.90	6751	822	2	0	0	0	0	logfile
✔	9L1S	62753	2025-05-11	2024-12-15	3.0	3.20	3.21	3.2	0.003	0.66	0.0	0.04	14.05	0.01	1.945	9.32	0.24	6.6	93.4	0.0	-2.12	0.71	0.75	2.11	3.2	0.004	0.75	0.0	0.05	16.78	0.00	2.550	8.92	2.59	7.1	92.9	0.0	-1.41	0.60	0.73	0.79	2.42	7584	989	3	0	0	0	0	logfile
✔	9MJ5	48312	2025-05-14	2024-12-13	3.5	4.13	—	3.9	0.005	0.70	0.0	0.04	19.13	0.00	1.915	5.91	0.73	3.8	96.1	0.1	0.76	0.83	0.83	1.75	3.9	0.003	0.62	0.0	0.04	19.61	0.00	1.887	6.76	3.56	4.8	95.2	0.1	0.64	0.31	0.84	0.83	1.73	11919	1378	8	42	3	0	0	logfile
✔	9L0F	62699	2025-05-13	2024-12-12	4.1	4.77	3.60	4.0	0.004	0.61	0.0	0.05	15.82	0.00	2.336	5.68	0.36	6.1	93.6	0.3	-0.84	0.65	0.72	—	4.1	0.003	0.58	0.0	0.05	13.15	0.00	2.585	8.52	0.00	5.9	93.9	0.2	-1.26	1.46	0.72	0.91	—	9954	1302	6	0	0	0	0	logfile
✔	9L0E	62698	2025-05-14	2024-12-12	3.6	3.53	3.31	3.5	0.003	0.69	0.0	0.05	15.97	0.00	2.212	5.79	0.70	5.2	94.8	0.0	-0.68	0.70	0.82	2.86	3.4	0.003	0.63	0.0	0.05	16.63	0.00	2.519	4.66	2.90	6.6	93.4	0.0	0.23	1.52	0.72	0.90	2.98	12096	1512	12	0	0	0	0	logfile
✘	9L0D	62697	2025-05-16	2024-12-12	3.41	3.46	3.30	3.5	0.005	0.79	0.0	0.05	18.36	0.00	2.002	16.67	8.00	6.5	93.3	0.1	-3.75	0.64	0.71	1.68	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13894	1718	4	0	0	0	0	logfile
✔	9HNP	52311	2025-05-14	2024-12-11	2.53	2.08	2.55	1.9	0.014	1.86	0.0	0.11	13.61	0.04	2.429	4.73	0.34	0.8	99.2	0.0	-0.45	0.77	0.78	5.12	1.9	0.004	0.62	0.0	0.04	14.18	0.01	2.498	4.48	1.53	1.0	99.0	0.0	1.95	1.24	0.78	0.80	3.57	11864	766	4	0	4	0	5940	logfile
✔	9MHD	48274	2025-05-12	2024-12-11	2.92	3.33	3.08	3.3	0.003	0.50	0.0	0.04	25.77	0.00	2.045	4.37	4.36	2.3	97.7	0.0	1.67	0.63	0.82	3.41	3.3	0.003	0.50	0.0	0.04	18.62	0.00	1.980	3.37	2.13	2.6	97.4	0.0	1.76	1.22	0.57	0.78	3.21	8923	1068	9	0	7	6	0	logfile

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