Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	9HNW	52316	2025-05-12	2024-12-11	3.04	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9349	1178	6	0	2	0	0	logfile
✔	9MHH	48278	2025-05-14	2024-12-11	4.5	3.44	—	2.3	0.007	0.80	0.0	0.17	10.15	0.00	1.401	0.42	0.00	2.4	97.5	0.1	0.48	0.74	0.58	—	2.2	0.003	0.81	0.0	0.12	8.14	0.00	1.714	0.77	0.00	9.8	90.2	0.0	-0.77	1.30	0.71	0.60	—	11243	2794	7	0	4	0	0	logfile
✔	9MFU	48237	2025-05-10	2024-12-10	2.87	2.58	2.40	2.4	0.042	4.25	42.0	0.20	21.84	0.01	2.598	12.83	13.51	23.3	76.7	0.0	-3.12	0.69	0.91	5.53	2.2	0.124	3.60	45.0	0.24	24.98	0.02	2.217	5.40	7.92	26.4	73.3	0.2	-6.58	0.83	0.70	0.94	5.28	6776	616	98	0	98	0	0	logfile
✔	9MGA	48244	2025-05-10	2024-12-10	2.85	2.34	2.53	2.1	0.035	3.30	0.0	0.09	18.89	0.02	2.556	9.86	5.88	14.3	85.7	0.0	-5.15	0.62	0.81	5.89	1.9	0.154	4.68	32.0	0.29	22.90	0.04	1.916	13.49	10.36	22.1	77.2	0.7	-5.81	1.34	0.69	0.91	4.64	4599	420	63	0	63	0	0	logfile
✔	9KZJ	62664	2025-05-23	2024-12-10	3.5	4.05	3.04	3.6	0.003	0.66	0.0	0.04	15.23	0.00	2.133	6.04	1.10	3.5	95.8	0.7	-1.38	0.50	0.82	2.61	3.6	0.006	0.71	0.0	0.05	15.89	0.00	2.204	4.81	3.23	4.7	94.9	0.4	-1.19	2.80	0.51	0.91	2.76	24095	3145	14	0	0	0	0	logfile
✔	9KY5	62640	2025-05-11	2024-12-08	3.6	4.04	3.69	4.0	0.005	0.71	0.0	0.04	14.69	0.00	2.204	15.18	1.27	7.0	93.0	0.0	-3.42	0.57	0.80	1.78	4.0	0.003	0.68	0.0	0.04	16.57	0.00	2.492	9.16	2.79	5.8	94.2	0.0	0.26	0.98	0.52	0.76	1.19	7277	935	3	0	0	0	0	logfile
✔	9HM9	52289	2025-05-16	2024-12-07	3.4	4.51	3.41	3.5	0.003	0.73	0.0	0.05	13.19	0.01	2.003	4.42	0.00	3.7	96.3	0.0	-1.83	0.76	0.85	3.47	3.5	0.005	0.76	0.0	0.04	14.00	0.00	1.936	7.18	0.38	3.1	96.9	0.0	1.14	1.18	0.78	0.90	2.49	14798	1876	11	0	10	0	0	logfile
✔	9MEL	48217	2025-05-09	2024-12-06	3.17	3.39	3.13	3.4	0.004	0.73	0.0	0.05	20.72	0.00	2.206	4.44	1.72	3.9	96.1	0.0	3.40	0.56	0.82	1.52	3.4	0.003	0.61	0.0	0.03	16.43	0.00	2.536	3.33	2.01	2.6	97.4	0.0	4.14	0.26	0.57	0.82	1.51	3589	476	4	0	4	0	0	logfile
✘	9MEK	48216	2025-05-09	2024-12-06	2.85	3.15	2.88	3.1	0.003	0.53	0.0	0.03	14.27	0.00	2.306	6.84	1.68	2.1	97.9	0.0	3.48	0.58	0.84	2.28	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3594	478	4	0	6	0	0	logfile
✔	9MCW	48163	2025-05-15	2024-12-05	2.9	2.98	2.93	3.0	0.015	1.57	0.0	0.16	22.43	0.02	2.298	0.05	0.00	0.0	0.0	0.0	—	0.74	0.81	—	3.0	0.008	0.81	0.0	0.04	23.16	0.01	2.470	3.33	0.00	0.0	0.0	0.0	—	1.11	0.80	0.89	—	13206	0	2	616	0	0	0	logfile
✔	9ELY	48162	2025-05-09	2024-12-05	2.9	3.17	2.91	3.1	0.003	0.70	0.0	0.06	21.92	0.01	2.339	0.15	0.00	0.0	0.0	0.0	—	0.62	0.82	—	3.1	0.006	0.81	0.0	0.05	22.09	0.01	2.533	3.38	0.00	0.0	0.0	0.0	—	0.96	0.67	0.90	—	4334	0	1	202	0	0	0	logfile
✔	9EKC	48119	2025-05-13	2024-12-02	3.8	4.21	3.74	18.0	0.004	0.86	0.0	0.03	15.02	0.01	2.625	5.52	0.10	0.8	99.2	0.0	1.16	0.58	0.87	0.29	19.0	0.002	0.63	0.0	0.02	17.13	0.00	2.623	5.21	4.31	0.0	100.0	0.0	7.42	1.21	0.59	0.87	-0.70	10659	1326	102	0	0	0	0	logfile
✔	9EKF	48120	2025-05-18	2024-12-02	2.68	2.85	2.69	2.9	0.005	0.94	0.0	0.06	16.75	0.01	0.836	4.34	2.15	4.2	95.8	0.0	-1.19	0.46	0.67	4.39	2.9	0.003	0.69	0.0	0.05	16.96	0.00	2.492	5.33	2.74	4.0	96.0	0.0	-0.47	1.50	0.68	0.89	4.39	17537	2145	15	0	33	0	0	logfile
✔	9EKB	48117	2025-05-15	2024-12-02	3.65	4.27	3.76	4.2	0.005	1.02	0.0	0.04	9.44	0.00	2.205	4.69	1.91	3.5	96.4	0.1	1.07	0.77	0.76	1.86	4.2	0.003	0.55	0.0	0.04	12.71	0.00	2.398	4.84	1.57	3.2	96.7	0.1	1.59	1.29	0.78	0.77	1.26	13324	1694	5	0	2	0	0	logfile
✔	9HJC	52212	2025-05-11	2024-11-28	2.1	2.26	2.09	2.3	0.006	0.71	0.0	0.05	14.74	0.00	2.469	2.34	0.00	2.5	97.5	0.0	1.01	0.60	0.79	6.45	2.3	0.003	0.51	0.0	0.04	15.88	0.00	1.854	1.82	0.00	2.3	97.7	0.0	0.78	0.24	0.60	0.79	6.07	7674	486	4	0	4	0	3806	logfile
✔	9KRG	62526	2025-05-17	2024-11-27	2.9	3.13	2.98	3.2	0.004	0.79	0.0	0.04	17.94	0.00	2.244	7.38	0.81	4.6	95.4	0.0	0.33	0.35	0.55	0.52	3.2	0.003	0.62	0.0	0.04	18.35	0.00	2.577	3.67	4.44	3.2	96.8	0.0	2.00	0.72	0.56	0.78	0.79	15876	2037	7	0	0	0	0	logfile
✔	9KR6	62520	2025-05-10	2024-11-27	2.77	2.95	2.78	3.0	0.011	0.93	0.0	0.06	14.33	0.01	1.801	7.12	0.78	7.6	91.9	0.5	-3.04	0.74	0.84	4.83	3.0	0.004	0.65	0.0	0.04	16.87	0.00	2.451	4.45	2.73	4.5	95.5	0.0	-0.14	0.49	0.70	0.85	3.93	6760	830	4	0	0	0	0	logfile
✔	9KQJ	62506	2025-05-10	2024-11-26	2.95	3.19	3.04	3.3	0.005	0.62	0.0	0.04	26.55	0.00	2.099	9.36	3.24	2.3	97.7	0.0	-0.91	0.57	0.79	3.55	3.4	0.003	0.58	0.0	0.04	21.17	0.00	2.391	6.77	1.77	1.5	98.5	0.0	1.65	0.35	0.55	0.78	3.81	7056	754	4	0	22	0	0	logfile
✔	9KQi	62505	2025-05-10	2024-11-26	3.02	3.23	3.12	3.4	0.005	0.56	0.0	0.04	25.03	0.00	2.205	9.25	0.44	1.7	98.3	0.0	-0.77	0.58	0.81	3.72	3.4	0.003	0.53	0.0	0.04	20.65	0.00	2.442	7.09	2.94	2.0	98.0	0.0	1.67	1.10	0.56	0.80	3.56	7082	756	4	0	22	0	0	logfile
✔	9EiJ	48085	2025-05-18	2024-11-26	3.3	3.83	3.29	3.5	0.002	0.65	0.0	0.04	13.60	0.01	2.236	1.92	0.96	3.3	96.6	0.0	0.53	0.67	0.79	2.34	3.5	0.004	0.77	0.0	0.04	16.35	0.00	2.356	7.61	1.81	2.6	97.4	0.0	1.64	1.02	0.68	0.82	1.72	16970	2121	22	0	9	0	0	logfile

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