Table showing results for June 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8STE	40759	2023-06-14	2023-05-10	3.34	3.55	3.29	3.5	0.005	0.69	0.0	0.04	14.38	0.00	1.979	10.65	0.00	6.2	93.8	0.0	-0.32	0.57	0.80	2.57	3.5	0.003	0.64	0.0	0.04	16.32	0.00	2.278	8.95	0.16	6.0	94.0	0.0	0.02	1.20	0.57	0.83	2.10	5816	712	4	0	2	0	0	logfile
✔	8SoY	40671	2023-06-16	2023-04-30	2.85	2.95	2.81	3.0	0.005	0.73	0.0	0.05	12.14	0.01	2.374	1.86	0.00	2.3	97.7	0.0	-0.69	0.70	0.82	2.95	3.0	0.004	0.60	0.0	0.05	15.57	0.01	2.316	3.01	3.62	2.5	97.5	0.0	-0.03	0.27	0.70	0.83	1.52	10074	1422	6	0	0	0	0	logfile
✔	8SLY	40583	2023-06-19	2023-04-24	3.32	3.53	3.22	3.4	0.006	0.66	0.0	0.05	14.78	0.00	2.205	6.02	0.00	1.7	98.3	0.0	1.34	0.75	0.86	2.93	3.4	0.002	0.52	0.0	0.04	14.53	0.00	2.241	5.86	0.00	1.9	98.1	0.0	2.41	0.38	0.76	0.89	2.88	18257	2364	12	0	13	4	0	logfile
✔	8SLX	40582	2023-06-19	2023-04-24	3.23	3.68	3.11	3.5	0.004	0.48	0.0	0.04	13.37	0.00	2.353	5.45	0.00	1.2	98.8	0.0	1.44	0.76	0.83	3.04	3.5	0.002	0.50	0.0	0.04	14.18	0.00	2.329	5.45	0.06	2.2	97.8	0.0	2.34	0.38	0.76	0.85	2.39	17885	2376	10	0	5	4	0	logfile
✔	8oTT	17184	2023-06-17	2023-04-21	3.3	3.86	3.31	3.4	0.005	0.77	0.0	0.05	24.44	0.01	2.513	1.15	0.16	1.3	98.7	0.0	1.04	0.89	0.82	2.67	3.5	0.005	0.67	2.0	0.04	27.31	0.00	2.173	8.02	0.00	2.7	97.3	0.0	3.61	0.78	0.91	0.89	2.35	12973	859	17	288	8	0	0	logfile
✔	8oTS	17183	2023-06-17	2023-04-21	3.3	4.05	3.44	3.6	0.009	1.03	0.0	0.06	25.68	0.01	2.508	0.66	0.63	0.3	99.7	0.0	1.70	0.89	0.85	2.32	3.7	0.005	0.56	0.0	0.03	25.90	0.00	2.174	7.52	0.00	1.2	98.8	0.0	4.62	1.37	0.89	0.88	1.45	13160	985	18	254	8	0	0	logfile
✘	8SL0	40570	2023-06-14	2023-04-20	3.3	4.17	3.09	3.8	0.003	0.62	0.0	0.05	16.00	0.00	2.201	7.96	0.00	8.4	91.2	0.4	-1.67	0.42	0.83	1.40	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	1737	228	1	0	0	0	0	logfile
✔	8oSK	17157	2023-06-18	2023-04-19	3.6	4.91	—	3.0	0.009	1.12	0.0	0.06	24.46	0.01	2.263	0.52	0.00	0.3	99.7	0.0	1.80	0.86	0.79	0.46	3.0	0.005	0.76	0.0	0.04	26.90	0.00	2.169	12.41	0.31	2.2	97.8	0.0	1.61	1.23	0.87	0.83	0.62	13995	1343	12	248	0	0	0	logfile
✔	8oSL	17160	2023-06-17	2023-04-19	4.9	8.34	6.27	6.8	0.005	0.80	0.0	0.05	28.45	0.00	2.363	2.30	0.00	1.1	98.9	0.0	-0.07	0.81	0.71	—	7.0	0.005	0.63	0.0	0.04	34.49	0.00	2.021	72.35	0.00	5.2	94.8	0.0	1.59	2.75	0.87	0.82	—	13541	1441	14	294	0	0	301	logfile
✔	8J3Z	35968	2023-06-16	2023-04-18	3.17	3.43	3.25	3.5	0.009	0.95	1.0	0.14	13.72	0.01	1.975	17.22	0.28	5.2	94.8	0.0	-1.65	0.63	0.81	2.02	3.5	0.004	0.66	0.0	0.04	15.60	0.00	1.964	12.44	0.09	3.7	96.3	0.0	-0.60	0.92	0.61	0.82	1.43	9814	1218	1	0	5	0	0	logfile
✔	8J3W	35967	2023-06-16	2023-04-18	3.07	3.28	3.11	3.3	0.004	0.68	0.0	0.04	13.92	0.00	1.891	16.07	0.00	3.8	96.2	0.0	-1.89	0.58	0.76	2.14	3.3	0.004	0.63	0.0	0.04	15.43	0.00	2.065	13.53	0.38	2.1	97.9	0.0	0.50	1.23	0.56	0.78	1.65	9739	1218	1	0	1	0	0	logfile
✔	8SiK	40508	2023-06-18	2023-04-16	2.9	3.14	2.92	3.2	0.003	0.51	0.0	0.04	15.67	0.00	2.206	6.55	0.96	1.7	98.3	0.0	2.43	0.56	0.79	4.00	3.2	0.002	0.47	0.0	0.04	16.00	0.00	2.245	6.49	1.51	2.2	97.8	0.0	2.72	0.22	0.64	0.84	3.66	15832	1984	12	0	8	0	0	logfile
✔	8Si4	40498	2023-06-24	2023-04-14	2.46	2.61	2.60	2.7	0.014	1.27	0.0	0.07	19.03	0.01	2.040	4.33	0.82	11.4	87.9	0.7	-5.18	0.58	0.72	3.54	2.7	0.005	0.66	0.0	0.05	18.64	0.00	1.865	16.38	1.23	8.9	90.8	0.3	-1.65	0.84	0.63	0.76	2.78	75145	4420	12	0	65	236	36148	logfile
✔	8SiB	40505	2023-06-14	2023-04-14	2.62	3.44	2.68	3.3	0.007	1.30	0.0	0.06	11.70	0.01	2.265	4.20	0.78	12.9	85.8	1.3	-5.28	0.73	0.84	3.54	3.3	0.003	0.89	0.0	0.05	15.64	0.00	2.221	13.44	2.58	13.3	86.4	0.2	-1.48	2.04	0.70	0.82	2.65	3544	454	1	0	0	0	0	logfile
✔	8Si3	40497	2023-06-24	2023-04-14	2.61	2.82	2.75	2.9	0.009	1.18	0.0	0.05	18.76	0.01	1.981	4.43	0.41	8.7	90.7	0.6	-5.14	0.58	0.74	4.13	2.9	0.004	0.62	0.0	0.04	17.63	0.00	1.901	14.57	1.53	7.6	92.3	0.2	-0.58	1.44	0.63	0.83	3.49	74749	4420	12	0	61	160	36136	logfile
✔	8Si8	40502	2023-06-24	2023-04-14	2.99	3.23	3.11	3.2	0.014	1.31	0.0	0.06	18.72	0.01	1.990	4.28	0.41	12.7	86.6	0.7	-5.92	0.66	0.78	3.56	3.2	0.005	0.70	0.0	0.05	17.83	0.00	1.973	17.48	2.07	11.0	88.9	0.1	-1.86	1.27	0.68	0.84	2.13	74753	4420	8	0	65	0	36144	logfile
✔	8Si5	40499	2023-06-24	2023-04-14	2.17	2.32	2.30	2.3	0.014	1.27	0.0	0.06	17.76	0.01	2.001	3.41	0.31	7.7	92.1	0.2	-3.02	0.60	0.78	4.56	2.3	0.004	0.68	0.0	0.05	17.42	0.00	1.866	13.43	0.62	5.6	94.4	0.0	-0.22	0.68	0.65	0.86	3.65	74865	4388	12	0	65	404	35916	logfile
✔	8SiA	40504	2023-06-24	2023-04-14	2.91	3.13	3.00	3.1	0.013	1.24	0.0	0.09	18.86	0.01	1.993	5.03	0.72	14.5	85.0	0.5	-6.42	0.61	0.69	3.40	3.1	0.003	0.71	2.0	0.10	17.81	0.00	2.013	19.78	1.69	11.5	88.4	0.1	-2.42	1.22	0.63	0.77	2.80	74681	4420	8	0	65	0	36144	logfile
✔	8Si6	40500	2023-06-24	2023-04-14	2.44	2.67	2.66	2.8	0.012	1.22	0.0	0.05	19.10	0.01	2.047	3.07	0.00	7.5	91.8	0.7	-5.09	0.45	0.52	1.04	2.7	0.004	0.72	0.0	0.04	18.13	0.00	1.965	13.35	1.25	8.6	91.1	0.3	-0.34	1.78	0.60	0.82	3.18	74889	4428	8	0	65	0	36240	logfile
✔	8Si7	40501	2023-06-24	2023-04-14	2.59	2.88	2.81	3.0	0.015	1.22	0.0	0.06	18.76	0.01	1.983	3.79	0.20	9.1	90.2	0.7	-4.99	0.58	0.76	4.17	3.0	0.003	0.62	0.0	0.04	18.07	0.00	1.897	14.50	0.94	8.5	91.0	0.4	-0.49	0.86	0.60	0.83	3.57	74897	4420	12	0	65	156	36136	logfile

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