Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9E2V	47469	2025-06-15	2024-10-23	2.0	2.78	2.06	2.5	0.002	0.40	0.0	0.04	17.95	0.00	2.381	3.76	0.85	0.9	99.1	0.0	1.64	0.79	0.94	5.25	2.5	0.003	0.47	0.0	0.04	17.50	0.00	2.629	2.68	1.58	1.4	98.6	0.0	2.37	0.79	0.78	0.94	5.66	16910	2260	10	0	0	0	0	logfile
✔	9H5J	51886	2025-06-04	2024-10-22	2.72	2.79	2.74	2.9	0.012	1.96	0.0	0.08	11.32	0.02	2.556	0.00	0.00	6.2	92.1	1.7	-2.25	0.43	0.87	6.55	2.9	0.003	0.75	0.0	0.05	17.33	0.01	2.599	4.32	3.70	6.2	93.8	0.0	-2.96	0.83	0.45	0.91	4.94	3300	432	6	0	0	0	0	logfile
✔	9E2H	47452	2025-06-11	2024-10-22	2.77	2.17	2.81	1.9	0.004	0.69	0.0	0.04	19.52	0.01	2.241	8.51	4.70	3.0	96.4	0.7	1.85	0.79	0.80	2.46	1.9	0.004	0.66	0.0	0.04	19.51	0.01	2.387	7.01	4.50	2.0	97.3	0.7	2.84	1.14	0.80	0.81	2.44	13074	1646	6	0	0	0	0	logfile
✔	9K6L	62129	2025-06-07	2024-10-22	2.77	2.29	2.78	2.1	0.004	0.77	0.0	0.05	16.44	0.01	2.090	16.17	0.31	3.3	96.7	0.0	0.62	0.73	0.75	2.26	2.0	0.003	0.65	0.0	0.04	17.41	0.00	2.470	12.17	4.18	2.9	97.1	0.0	0.57	0.41	0.77	0.78	2.25	8914	1127	6	0	1	0	0	logfile
✔	9H5G	51884	2025-06-04	2024-10-22	2.48	2.59	2.46	2.7	0.012	1.99	0.0	0.09	10.88	0.01	2.550	0.00	0.00	6.0	94.0	0.0	-1.90	0.44	0.85	6.35	2.6	0.004	0.82	0.0	0.05	16.80	0.00	2.606	2.08	4.23	6.2	93.8	0.0	-2.64	0.66	0.45	0.89	3.87	3300	432	6	0	0	0	0	logfile
✔	9E2i	47453	2025-06-24	2024-10-22	3.18	2.33	3.22	1.6	0.005	0.89	0.0	0.05	20.29	0.01	2.140	19.43	8.03	6.3	92.8	0.9	-2.20	0.76	0.77	1.75	1.6	0.003	0.74	0.0	0.04	19.50	0.00	2.466	12.10	5.03	4.8	94.9	0.3	0.71	0.70	0.75	0.75	1.44	28392	3522	6	0	0	0	0	logfile
✔	9E2M	47457	2025-06-13	2024-10-22	2.98	2.22	3.10	1.9	0.004	0.74	0.0	0.04	19.90	0.01	2.235	9.41	5.31	3.7	95.4	0.9	0.81	0.80	0.80	2.41	1.9	0.004	0.70	0.0	0.04	19.72	0.01	2.454	7.85	4.49	2.9	96.4	0.7	2.03	0.48	0.80	0.80	2.01	15412	1926	7	0	1	0	0	logfile
✔	9E2J	47454	2025-06-22	2024-10-22	3.59	2.40	3.65	1.5	0.004	0.84	0.0	0.04	20.10	0.01	2.089	21.12	6.74	7.3	91.9	0.8	-2.51	0.73	0.72	1.11	1.6	0.004	0.88	2.0	0.04	19.55	0.01	2.358	14.70	6.13	5.8	93.8	0.5	0.09	1.66	0.72	0.72	1.28	25560	3174	6	0	0	0	0	logfile
✔	9E2K	47455	2025-06-13	2024-10-22	3.0	2.21	3.09	1.9	0.004	0.77	0.0	0.04	19.33	0.01	2.199	10.12	2.32	3.7	95.6	0.6	1.03	0.80	0.80	2.24	1.9	0.004	0.69	0.0	0.04	19.38	0.00	2.444	8.15	3.42	3.0	96.4	0.6	1.84	0.43	0.80	0.80	1.95	15520	1939	7	0	1	0	0	logfile
✔	9E2L	47456	2025-06-13	2024-10-22	3.08	2.22	3.12	1.9	0.003	0.74	0.0	0.04	19.47	0.01	2.182	9.82	2.33	3.9	95.3	0.8	0.92	0.79	0.79	2.17	1.9	0.004	0.64	0.0	0.04	19.35	0.00	2.426	7.12	4.19	3.5	95.9	0.6	2.14	0.42	0.81	0.80	2.27	15436	1928	7	0	1	0	0	logfile
✔	9K40	62036	2025-06-10	2024-10-21	3.15	3.98	3.19	3.3	0.004	0.61	0.0	0.04	28.83	0.00	2.219	7.01	0.65	1.0	99.0	0.0	2.72	0.88	0.81	2.25	3.3	0.006	0.67	0.0	0.04	29.48	0.00	2.441	8.37	2.59	2.1	97.9	0.0	3.19	0.64	0.92	0.89	1.94	11824	746	10	290	0	0	0	logfile
✔	9K3Z	62034	2025-06-10	2024-10-21	2.75	3.65	2.90	3.1	0.004	0.59	0.0	0.04	29.15	0.00	2.204	5.41	0.64	1.1	98.9	0.0	2.69	0.90	0.86	2.83	3.1	0.004	0.61	0.0	0.03	28.89	0.00	2.104	6.91	2.09	1.2	98.8	0.0	3.76	0.52	0.90	0.88	2.41	11814	744	10	290	0	0	0	logfile
✔	9E25	47436	2025-06-16	2024-10-21	3.2	3.94	—	3.7	0.003	0.46	0.0	0.04	13.78	0.00	1.991	5.24	0.06	4.1	95.9	0.0	1.28	0.84	0.70	-0.08	3.7	0.004	0.73	0.0	0.05	15.89	0.00	2.456	12.26	2.54	3.1	96.9	0.0	1.01	1.28	0.91	0.87	1.34	18180	2532	6	0	0	0	0	logfile
✔	9K41	62038	2025-06-10	2024-10-21	2.81	3.92	3.03	3.1	0.004	0.56	0.0	0.04	28.88	0.00	2.209	6.01	1.29	1.6	98.4	0.0	1.93	0.91	0.88	2.33	3.1	0.004	0.64	0.0	0.03	28.90	0.00	2.472	7.51	1.61	2.6	97.4	0.0	3.27	1.21	0.91	0.89	2.03	11828	746	10	290	0	0	0	logfile
✔	9E1T	47420	2025-06-08	2024-10-21	3.0	3.15	3.04	3.1	0.002	0.38	0.0	0.04	10.62	0.00	2.108	5.74	0.00	2.7	97.3	0.0	0.55	0.72	0.79	3.41	3.1	0.003	0.62	0.0	0.04	15.81	0.00	2.099	8.75	1.11	4.4	95.6	0.0	0.26	2.75	0.74	0.80	3.16	10032	1204	4	2	2	0	0	logfile
✔	9K43	62042	2025-06-10	2024-10-21	2.87	4.01	3.12	3.2	0.004	0.61	0.0	0.04	28.51	0.00	2.234	7.24	0.80	0.8	99.2	0.0	2.81	0.90	0.85	2.69	3.2	0.004	0.63	0.0	0.03	28.57	0.00	2.487	7.71	1.45	1.9	98.1	0.0	3.05	1.23	0.91	0.89	1.88	11814	744	10	290	0	0	0	logfile
✔	9K42	62040	2025-06-10	2024-10-21	3.14	3.95	3.18	3.2	0.006	0.84	0.0	0.06	31.95	0.00	2.050	5.40	0.49	1.2	98.8	0.0	2.37	0.86	0.78	2.08	3.2	0.004	0.61	0.0	0.03	29.25	0.00	2.509	9.94	1.78	2.1	97.9	0.0	3.21	2.28	0.92	0.87	2.01	11824	746	10	290	0	0	0	logfile
✔	9E26	47439	2025-06-16	2024-10-21	2.8	3.57	—	3.3	0.005	0.53	0.0	0.05	14.68	0.00	1.886	5.82	1.07	2.9	97.1	0.0	1.74	0.83	0.69	0.71	3.3	0.005	0.81	0.0	0.05	16.44	0.01	1.986	12.01	3.04	2.7	97.3	0.0	1.12	1.25	0.91	0.87	2.50	18444	2532	10	0	8	0	0	logfile
✔	9E27	47442	2025-06-16	2024-10-21	3.2	3.80	—	3.6	0.003	0.53	0.0	0.05	14.22	0.00	1.923	8.53	0.11	4.2	95.8	0.0	1.35	0.89	0.83	2.46	3.6	0.005	0.67	0.0	0.05	15.52	0.00	2.024	7.97	2.48	3.3	96.7	0.0	1.01	0.49	0.92	0.87	2.05	18496	2532	12	0	12	0	0	logfile
✔	9E29	47446	2025-06-16	2024-10-21	3.3	4.22	—	3.9	0.004	0.59	0.0	0.05	15.01	0.00	1.765	10.24	0.17	5.0	95.0	0.0	0.33	0.86	0.68	0.72	3.8	0.005	0.85	0.0	0.05	16.58	0.01	1.907	14.47	3.38	4.0	96.0	0.0	0.07	1.84	0.91	0.84	0.76	18498	2532	12	0	12	0	0	logfile

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