Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9KC9	62246	2025-06-13	2024-11-01	3.1	3.32	2.95	3.4	0.003	0.59	0.0	0.04	18.10	0.00	2.239	4.25	0.61	3.7	96.3	0.0	0.26	0.64	0.86	1.81	3.4	0.003	0.52	0.0	0.04	18.01	0.00	2.474	2.84	2.26	5.6	94.4	0.0	0.36	0.90	0.65	0.87	1.97	15005	1825	10	0	15	0	0	logfile
✔	9E7J	47678	2025-06-04	2024-11-01	2.98	3.23	2.97	3.3	0.011	0.90	0.0	0.05	14.35	0.00	2.493	11.05	0.00	2.8	97.2	0.0	-0.61	0.60	0.76	3.17	3.2	0.004	0.62	0.0	0.04	16.04	0.00	2.665	10.07	0.95	0.0	100.0	0.0	2.97	0.41	0.58	0.77	2.79	3112	440	4	0	0	0	0	logfile
✔	9KCA	62247	2025-06-13	2024-11-01	3.18	3.39	3.18	3.4	0.005	0.65	0.0	0.04	17.73	0.00	2.238	4.08	0.24	4.8	95.2	0.0	-0.89	0.68	0.89	2.17	3.4	0.002	0.49	0.0	0.04	17.79	0.00	2.450	2.17	2.20	3.7	96.3	0.0	0.48	0.26	0.67	0.88	1.80	15005	1825	10	0	15	0	0	logfile
✔	9E6L	47572	2025-06-14	2024-10-30	3.3	4.20	3.38	3.8	0.002	0.50	0.0	0.04	14.12	0.00	1.753	5.38	0.00	1.3	98.6	0.0	1.86	0.71	0.87	2.77	3.7	0.004	0.54	0.0	0.04	14.68	0.00	1.951	4.32	0.29	1.1	98.9	0.0	2.07	0.33	0.72	0.90	2.58	16587	2094	18	18	18	0	0	logfile
✘	9E6N	47573	2025-06-14	2024-10-30	2.8	3.68	2.85	3.4	0.003	0.50	0.0	0.04	14.95	0.00	1.976	4.64	0.41	1.4	98.6	0.0	0.67	0.74	0.85	3.01	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16522	2085	18	18	12	0	0	logfile
✔	9KBF	62223	2025-06-05	2024-10-30	3.74	3.96	3.77	3.9	0.004	0.64	0.0	0.05	14.54	0.00	2.199	6.95	0.20	7.4	92.6	0.0	-1.16	0.71	0.80	1.76	3.9	0.004	0.63	0.0	0.04	16.71	0.00	2.469	13.12	1.96	5.3	94.7	0.0	0.01	0.76	0.72	0.81	1.53	4587	569	2	0	0	0	0	logfile
✔	9KBD	62222	2025-06-09	2024-10-30	3.7	3.92	3.70	3.9	0.003	0.60	0.0	0.04	15.30	0.00	2.236	7.25	0.17	4.1	95.9	0.0	-1.05	0.73	0.78	1.71	3.9	0.003	0.62	0.0	0.04	16.95	0.00	2.396	11.28	1.35	4.1	95.9	0.0	0.33	0.75	0.72	0.73	1.56	10728	1318	4	0	0	0	0	logfile
✔	9KAY	62216	2025-06-25	2024-10-30	1.73	1.88	1.85	1.9	0.003	0.63	0.0	0.04	14.13	0.00	2.308	2.60	0.09	1.5	98.5	0.0	5.22	0.76	0.87	8.67	1.9	0.002	0.53	0.0	0.04	14.91	0.00	2.627	2.34	0.06	2.1	97.9	0.0	5.68	0.77	0.76	0.88	8.56	30168	3624	24	0	0	0	0	logfile
✔	9E6H	47565	2025-06-06	2024-10-30	2.84	3.49	2.79	3.2	0.014	0.99	0.0	0.05	19.32	0.00	2.087	3.06	0.00	1.6	98.4	0.0	0.47	0.80	0.77	4.47	3.2	0.004	0.87	0.0	0.05	14.65	0.00	2.083	4.85	0.36	2.1	97.9	0.0	0.69	1.07	0.83	0.86	5.43	8106	978	16	0	52	0	0	logfile
✔	9E5G	47526	2025-06-15	2024-10-28	3.07	3.27	3.05	3.3	0.003	0.50	2.0	0.04	15.87	0.00	2.253	5.55	0.42	2.4	97.4	0.2	1.08	0.47	0.66	2.45	3.3	0.003	0.48	0.0	0.04	15.85	0.00	2.583	3.79	2.83	2.9	97.0	0.2	1.35	0.65	0.70	0.86	4.12	9927	1318	17	0	6	69	0	logfile
✔	9K9V	62200	2025-06-14	2024-10-27	3.0	2.39	3.07	2.1	0.003	0.61	0.0	0.04	15.07	0.00	2.212	7.55	0.20	4.7	95.2	0.1	0.33	0.73	0.71	2.53	2.0	0.004	0.74	0.0	0.04	17.62	0.00	2.393	8.60	1.60	4.2	95.7	0.1	-0.33	0.50	0.75	0.75	1.96	13869	1624	5	30	0	0	0	logfile
✔	9K9S	62197	2025-06-14	2024-10-27	2.39	2.23	2.53	1.9	0.005	0.65	0.0	0.05	18.80	0.01	2.130	7.55	2.24	5.2	94.5	0.3	-0.14	0.81	0.82	3.61	1.9	0.003	0.60	0.0	0.04	18.93	0.00	1.398	5.13	2.90	4.0	95.7	0.3	0.34	0.31	0.83	0.85	3.50	14241	1642	7	39	3	0	0	logfile
✔	9K9U	62199	2025-06-14	2024-10-27	3.08	2.41	3.14	2.1	0.002	0.56	0.0	0.04	15.65	0.00	2.242	7.77	0.20	4.1	95.8	0.1	0.48	0.75	0.74	2.67	2.0	0.005	0.66	0.0	0.04	17.76	0.00	2.490	8.28	2.40	5.1	94.8	0.1	-0.01	0.93	0.76	0.78	2.57	13868	1624	5	30	0	0	0	logfile
✔	9K9T	62198	2025-06-14	2024-10-27	2.96	2.65	3.09	1.9	0.003	0.68	0.0	0.05	15.46	0.00	2.236	8.51	0.27	4.2	95.7	0.1	-0.22	0.81	0.77	2.52	2.0	0.004	0.77	0.0	0.04	18.23	0.01	2.396	10.45	2.67	4.3	95.6	0.1	-0.01	0.63	0.82	0.80	2.28	14139	1624	5	43	0	0	0	logfile
✔	9K9R	62196	2025-06-14	2024-10-27	2.61	2.28	2.69	2.1	0.005	0.63	0.0	0.04	15.94	0.00	2.117	5.99	0.07	4.3	95.4	0.3	0.14	0.78	0.80	3.96	2.1	0.003	0.59	0.0	0.04	17.98	0.00	1.972	5.74	1.12	3.9	95.9	0.2	0.42	0.92	0.80	0.83	3.22	14230	1642	7	38	3	0	0	logfile
✔	9K9L	62193	2025-06-08	2024-10-27	3.66	3.66	3.61	3.7	0.004	0.65	0.0	0.04	28.69	0.01	2.253	10.54	0.80	0.7	99.3	0.0	0.22	0.71	0.75	1.31	3.7	0.004	0.58	0.0	0.03	29.58	0.00	2.580	9.06	2.00	1.9	98.1	0.0	2.99	0.72	0.74	0.78	1.15	9813	599	10	242	0	0	0	logfile
✔	9H76	51912	2025-06-04	2024-10-26	2.9	3.57	2.91	3.4	0.005	0.59	0.0	0.04	15.75	0.01	2.053	5.90	0.23	1.7	98.3	0.0	2.14	0.68	0.90	3.66	3.4	0.004	0.64	0.0	0.04	16.50	0.00	2.475	6.85	2.96	2.0	98.0	0.0	2.07	0.60	0.64	0.87	3.27	4157	547	3	0	0	0	0	logfile
✔	9E4R	47518	2025-06-13	2024-10-25	3.31	3.69	3.51	3.7	0.003	0.57	0.0	0.04	15.26	0.00	2.353	6.29	0.25	2.9	97.1	0.0	0.28	0.74	0.81	2.57	3.7	0.003	0.59	0.0	0.04	16.36	0.00	2.590	3.30	1.58	2.2	97.8	0.0	0.81	1.01	0.78	0.84	2.05	14784	1866	12	0	6	0	0	logfile
✔	9K7N	62150	2025-06-04	2024-10-24	3.3	3.61	3.28	3.6	0.007	1.23	1.0	0.09	12.28	0.01	2.115	9.25	1.08	1.8	98.2	0.0	2.30	0.48	0.74	1.88	3.6	0.003	0.62	0.0	0.04	15.73	0.00	2.572	8.44	2.80	1.8	98.2	0.0	1.75	0.99	0.53	0.81	0.88	4332	545	2	0	2	0	0	logfile
✔	9E2V	47469	2025-06-15	2024-10-23	2.0	2.78	2.06	2.5	0.002	0.40	0.0	0.04	17.95	0.00	2.381	3.76	0.85	0.9	99.1	0.0	1.64	0.79	0.94	5.25	2.5	0.003	0.47	0.0	0.04	17.50	0.00	2.629	2.68	1.58	1.4	98.6	0.0	2.37	0.79	0.78	0.94	5.66	16910	2260	10	0	0	0	0	logfile

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