Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	9HBS	52028	2025-06-09	2024-11-08	3.68	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11044	1252	6	74	0	0	0	logfile
✘	9HBU	52030	2025-06-05	2024-11-08	3.51	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	5530	629	4	37	0	0	0	logfile
✔	9E9F	47796	2025-06-19	2024-11-08	3.63	4.13	3.91	3.9	0.003	0.58	0.0	0.04	11.62	0.00	2.196	15.43	2.83	3.5	96.4	0.0	0.89	0.70	0.74	1.19	4.0	0.003	0.77	0.0	0.04	15.36	0.00	2.421	14.98	2.12	3.7	96.3	0.0	0.79	0.91	0.72	0.82	1.14	23048	3035	3	0	0	0	0	logfile
✘	9HBX	52033	2025-06-05	2024-11-08	3.04	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	5261	630	5	22	0	0	0	logfile
✘	9HBR	52027	2025-06-05	2024-11-08	2.9	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	5236	625	5	22	0	0	0	logfile
✘	9HBT	52029	2025-06-11	2024-11-08	3.46	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13327	1581	10	60	0	0	0	logfile
✘	9HBZ	52035	2025-06-14	2024-11-08	3.49	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15706	1881	12	64	0	0	0	logfile
✘	9HBV	52031	2025-06-05	2024-11-08	3.38	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	5405	629	5	30	0	0	0	logfile
✘	9HBW	52032	2025-06-09	2024-11-08	3.59	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10702	1259	8	54	0	0	0	logfile
✘	9HBY	52034	2025-06-06	2024-11-08	3.1	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7976	951	7	35	0	0	0	logfile
✔	9E96	47775	2025-06-29	2024-11-07	4.05	4.39	3.98	4.3	0.008	0.90	0.0	0.05	14.95	0.01	2.200	8.51	1.20	4.8	95.1	0.0	-0.57	0.54	0.77	—	4.3	0.004	0.73	0.0	0.05	13.32	0.00	2.456	10.99	0.03	5.4	94.6	0.0	-0.44	1.41	0.58	0.83	—	33952	4400	16	0	0	0	0	logfile
✔	9KG2	62306	2025-06-07	2024-11-07	4.1	4.34	4.18	4.3	0.003	0.61	0.0	0.04	14.83	0.00	2.211	10.37	0.00	6.2	93.7	0.1	0.32	0.64	0.79	—	4.3	0.003	0.63	0.0	0.04	14.99	0.00	2.447	8.82	0.00	6.9	93.0	0.1	0.38	0.37	0.65	0.79	—	8964	1166	1	0	0	0	0	logfile
✔	9HBB	52014	2025-06-06	2024-11-06	3.0	3.19	2.92	3.2	0.011	1.88	0.0	0.09	10.83	0.01	2.495	0.28	0.00	7.2	92.8	0.0	-1.24	0.42	0.82	6.08	3.2	0.003	0.55	0.0	0.05	15.44	0.00	2.470	1.41	1.52	3.2	96.8	0.0	-1.56	1.40	0.43	0.85	4.86	7074	456	6	0	0	0	3606	logfile
✔	9KEV	62295	2025-06-29	2024-11-05	3.31	3.93	—	3.5	0.003	0.61	0.0	0.04	21.68	0.00	1.969	13.40	0.37	4.6	95.4	0.0	0.28	0.77	0.78	1.14	3.5	0.004	0.65	0.0	0.04	22.04	0.00	1.994	11.56	3.69	5.6	94.4	0.0	0.25	0.31	0.78	0.79	1.16	34321	3889	15	197	3	0	0	logfile
✔	9KET	62293	2025-06-26	2024-11-05	3.46	3.85	—	3.7	0.003	0.67	0.0	0.04	20.45	0.00	2.075	13.69	0.31	4.6	95.4	0.0	-0.52	0.76	0.76	1.59	3.7	0.003	0.68	0.0	0.04	20.51	0.00	2.120	10.56	3.64	3.9	96.1	0.0	-0.23	0.45	0.78	0.84	1.31	28870	3443	11	106	3	0	0	logfile
✔	9KEU	62294	2025-06-29	2024-11-05	3.7	4.17	—	3.8	0.004	0.71	0.0	0.04	20.73	0.00	1.969	16.53	0.46	4.7	95.3	0.0	-0.46	0.80	0.80	1.06	3.9	0.005	0.75	0.0	0.04	21.06	0.01	1.891	15.54	3.10	5.8	94.2	0.0	-0.43	1.28	0.81	0.82	0.92	31457	3642	13	154	3	0	0	logfile
✔	9E7W	47693	2025-06-23	2024-11-04	3.7	1.94	2.77	1.5	0.007	0.64	0.0	0.05	14.75	0.01	2.028	6.09	1.25	3.9	96.1	0.0	-0.83	0.45	0.71	5.19	1.6	0.003	0.56	0.0	0.04	15.71	0.00	2.419	6.25	2.43	2.2	97.8	0.0	-0.47	0.35	0.44	0.68	4.44	27857	3523	8	0	0	0	0	logfile
✔	9E82	47700	2025-06-06	2024-11-04	3.4	3.55	3.27	3.5	0.003	0.53	1.0	0.04	9.81	0.00	2.068	10.34	3.04	7.2	92.8	0.0	-0.53	0.57	0.63	1.07	3.5	0.004	0.80	0.0	0.05	13.72	0.01	2.323	13.32	4.45	5.4	94.6	0.0	-0.50	1.38	0.58	0.64	1.07	8200	1034	6	0	1	0	0	logfile
✔	9KDF	62274	2025-06-07	2024-11-03	3.3	2.46	—	2.9	0.007	0.74	0.0	0.04	14.53	0.01	1.213	10.13	0.25	4.1	95.9	0.0	0.94	0.68	0.63	1.43	2.1	0.003	0.69	0.0	0.04	17.20	0.00	1.168	10.40	3.24	4.7	95.3	0.0	1.37	0.55	0.70	0.67	1.04	7399	917	5	0	7	0	0	logfile
✔	9KDG	62275	2025-06-07	2024-11-03	3.33	3.31	3.36	3.5	0.007	0.68	0.0	0.04	14.75	0.01	2.035	5.75	0.00	3.2	96.8	0.0	0.37	0.46	0.71	2.78	3.5	0.003	0.60	0.0	0.04	16.79	0.00	1.957	5.61	1.64	3.8	96.2	0.0	1.28	0.46	0.48	0.74	1.94	7292	907	4	0	7	0	0	logfile

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