Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9HDD	52061	2025-06-11	2024-11-12	3.62	5.09	3.72	4.0	0.011	1.80	0.0	0.08	14.69	0.01	2.527	1.51	0.14	4.4	95.6	0.0	-2.50	0.88	0.77	-0.32	4.1	0.002	0.58	0.0	0.03	16.21	0.00	2.336	6.61	1.52	1.6	98.0	0.4	3.76	0.96	0.87	0.77	-0.32	12556	818	2	0	0	0	6260	logfile
✘	9HDP	52071	2025-06-09	2024-11-12	2.5	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10290	1025	8	86	2	0	0	logfile
✔	9HDQ	52072	2025-06-09	2024-11-12	2.45	2.20	2.50	2.4	0.007	1.15	0.0	0.09	19.15	0.01	2.353	1.10	0.00	0.4	99.6	0.0	-1.18	0.66	0.81	4.58	2.3	0.003	0.58	0.0	0.04	20.18	0.00	2.604	2.90	0.74	1.9	98.1	0.0	1.97	3.97	0.68	0.82	3.40	10261	1025	8	85	1	0	0	logfile
✘	9HDo	52070	2025-06-09	2024-11-12	2.3	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10290	1025	8	86	2	0	0	logfile
✔	9EAi	47832	2025-06-05	2024-11-11	3.1	3.42	3.09	3.4	0.003	0.51	0.0	0.04	10.65	0.00	2.233	6.30	1.37	2.1	97.9	0.0	0.13	0.58	0.83	3.53	3.4	0.002	0.49	0.0	0.04	12.97	0.00	2.558	4.77	2.91	2.4	97.6	0.0	0.76	0.25	0.57	0.83	2.70	5554	687	5	0	4	0	0	logfile
✔	9EAo	47838	2025-06-10	2024-11-11	2.6	2.87	2.56	2.9	0.003	0.62	0.0	0.05	17.27	0.01	2.103	4.31	5.19	5.6	94.2	0.2	-1.14	0.41	0.83	3.50	2.9	0.004	0.70	0.0	0.05	17.26	0.01	2.324	3.50	3.93	5.3	94.5	0.2	-1.02	0.19	0.38	0.84	3.38	11798	1534	6	0	3	0	0	logfile
✔	9EAR	47841	2025-06-15	2024-11-11	3.1	2.21	3.19	2.0	0.006	0.79	0.0	0.06	25.23	0.00	1.909	9.80	0.25	1.6	98.4	0.0	1.62	0.77	0.79	2.63	1.9	0.007	0.67	0.0	0.04	26.27	0.01	2.053	8.63	1.72	2.4	97.6	0.0	1.55	0.97	0.79	0.81	2.15	18004	1422	12	316	2	0	0	logfile
✔	9EAN	47837	2025-06-10	2024-11-11	2.4	2.52	2.43	4.8	0.006	0.84	0.0	0.05	17.82	0.01	2.091	5.34	2.75	5.5	94.3	0.2	-0.84	0.03	-0.02	0.66	2.5	0.004	0.79	0.0	0.05	17.78	0.01	2.399	5.29	2.12	5.6	94.3	0.1	-0.95	1.40	0.36	0.82	3.02	11798	1535	3	0	0	0	0	logfile
✔	9EAH	47831	2025-06-05	2024-11-11	3.1	3.37	3.11	3.3	0.002	0.45	0.0	0.04	10.95	0.00	2.254	5.72	0.68	3.6	96.4	0.0	-0.11	0.55	0.82	4.02	3.3	0.003	0.50	0.0	0.04	13.40	0.00	2.591	5.45	1.19	4.4	95.6	0.0	1.09	0.87	0.55	0.82	3.18	5606	702	5	0	2	0	0	logfile
✔	9Ki0	62361	2025-06-17	2024-11-11	2.65	2.91	2.78	2.9	0.004	0.69	0.0	0.04	19.13	0.01	2.030	6.67	2.12	4.0	95.9	0.1	-0.63	0.70	0.83	2.54	2.9	0.003	0.54	0.0	0.04	19.12	0.00	1.830	4.98	2.89	3.1	96.9	0.1	1.39	0.32	0.68	0.82	2.48	19397	2344	6	20	4	0	0	logfile
✔	9EAP	47839	2025-06-10	2024-11-11	2.7	2.81	2.69	2.9	0.004	0.73	0.0	0.04	18.58	0.00	2.148	8.42	4.25	7.9	92.0	0.1	-1.48	0.19	0.54	0.99	2.8	0.003	0.67	0.0	0.05	17.28	0.01	2.409	5.29	2.68	6.2	93.7	0.1	-1.37	1.86	0.36	0.84	2.79	11883	1534	6	0	3	0	0	logfile
✔	9EAJ	47833	2025-06-05	2024-11-11	3.2	3.44	3.19	3.4	0.004	0.51	0.0	0.04	12.00	0.00	2.136	7.55	1.78	4.2	95.8	0.0	0.76	0.56	0.81	3.46	3.4	0.003	0.55	0.0	0.04	14.28	0.00	2.560	7.55	2.67	3.3	96.7	0.0	1.23	0.89	0.60	0.82	2.94	5246	662	4	0	0	0	0	logfile
✔	9EAU	47846	2025-06-27	2024-11-11	3.06	3.38	3.14	3.3	0.004	0.74	0.0	0.05	12.61	0.01	2.051	2.61	2.00	5.3	94.5	0.2	-0.82	0.50	0.80	3.93	3.3	0.008	0.88	2.0	0.05	14.30	0.00	1.887	5.33	2.57	3.6	96.4	0.0	-0.15	0.62	0.55	0.86	3.29	31779	4138	16	0	2	0	0	logfile
✔	9EAQ	47840	2025-06-10	2024-11-11	2.7	2.85	2.72	2.9	0.002	0.57	0.0	0.04	17.47	0.01	2.279	4.57	4.09	4.8	95.0	0.1	-0.81	0.36	0.78	2.28	2.9	0.003	0.63	0.0	0.05	17.36	0.01	2.432	3.71	3.38	5.0	94.8	0.1	-0.84	0.22	0.35	0.84	2.68	11799	1535	3	0	0	0	0	logfile
✔	9KHZ	62360	2025-06-17	2024-11-11	3.03	3.31	3.10	3.3	0.004	0.69	1.0	0.04	18.78	0.01	1.979	12.56	0.67	7.5	92.0	0.4	-1.93	0.76	0.81	2.44	3.3	0.003	0.64	0.0	0.04	18.76	0.00	2.390	7.36	3.32	6.9	92.9	0.1	-0.38	0.45	0.76	0.80	2.26	19432	2343	6	22	2	0	0	logfile
✔	9KHV	62357	2025-06-17	2024-11-11	2.55	2.86	2.71	2.8	0.003	0.53	0.0	0.04	18.58	0.00	2.133	6.45	2.65	3.6	96.4	0.0	0.85	0.74	0.84	2.78	2.8	0.003	0.54	0.0	0.04	18.88	0.00	2.488	4.83	2.56	3.4	96.6	0.0	1.72	0.28	0.74	0.84	2.78	19377	2336	4	24	0	0	0	logfile
✔	9KH5	62332	2025-06-04	2024-11-09	3.74	4.67	2.98	4.3	0.008	0.98	0.0	0.04	17.15	0.01	2.202	28.14	8.97	13.0	87.0	0.0	-4.34	0.48	0.79	0.82	4.3	0.004	0.90	0.0	0.05	16.56	0.01	2.477	16.24	4.75	7.3	92.7	0.0	-0.05	2.17	0.48	0.81	0.82	3526	455	1	0	0	0	0	logfile
✔	9EA0	47823	2025-06-26	2024-11-09	2.0	2.14	2.05	2.1	0.004	0.60	0.0	0.05	13.94	0.00	2.253	2.26	0.86	2.0	98.0	0.0	0.36	0.74	0.86	5.76	2.1	0.003	0.72	0.0	0.04	12.95	0.00	1.994	1.95	0.82	3.0	97.0	0.0	0.34	0.35	0.76	0.87	6.01	30002	3555	51	0	144	1214	0	logfile
✔	9E9Z	47822	2025-06-28	2024-11-09	3.95	4.26	3.93	4.2	0.007	1.04	2.0	0.06	12.94	0.01	2.047	8.87	1.16	7.7	92.2	0.0	-1.56	0.51	0.77	1.87	4.2	0.004	0.80	1.0	0.05	16.20	0.00	2.190	14.47	4.10	4.8	95.2	0.0	-0.74	2.30	0.54	0.80	1.49	32832	4272	20	0	8	0	0	logfile
✔	9E9Y	47821	2025-06-28	2024-11-09	3.96	4.31	4.01	4.2	0.006	0.95	1.0	0.05	13.04	0.01	1.878	8.74	0.88	6.5	93.5	0.0	-1.50	0.49	0.75	1.73	4.2	0.005	0.81	0.0	0.05	16.04	0.01	2.158	15.74	4.23	4.8	95.2	0.0	-0.59	0.83	0.53	0.80	1.41	32836	4272	20	0	8	0	0	logfile

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